PDB Chemical Component HPF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HPF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.454 |
1.382 |
| C1 |
C6 |
1.421 |
1.386 |
| C1 |
H1 |
1.103 |
1.080 |
| C2 |
C3 |
1.442 |
1.383 |
| C2 |
H2 |
1.103 |
1.080 |
| C3 |
C4 |
1.418 |
1.383 |
| C3 |
H3 |
1.103 |
1.080 |
| C4 |
C5 |
1.406 |
1.387 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.384 |
1.393 |
| C5 |
N8 |
1.471 |
1.400 |
| C6 |
O7 |
1.364 |
1.360 |
| O7 |
HO7 |
0.950 |
0.967 |
| N8 |
C9 |
1.483 |
1.465 |
| N8 |
HN8 |
1.020 |
0.970 |
| C9 |
C10 |
1.537 |
1.531 |
| C9 |
O17 |
1.424 |
1.429 |
| C9 |
H9 |
1.115 |
1.090 |
| C10 |
C11 |
1.507 |
1.531 |
| C10 |
O18 |
1.458 |
1.428 |
| C10 |
H10 |
1.115 |
1.090 |
| C11 |
O12 |
1.467 |
1.429 |
| C11 |
H111 |
1.115 |
1.090 |
| C11 |
H112 |
1.115 |
1.090 |
| O12 |
P13 |
1.615 |
1.610 |
| P13 |
O14 |
1.616 |
1.610 |
| P13 |
O15 |
1.636 |
1.610 |
| P13 |
O16 |
1.488 |
1.480 |
| O14 |
H14 |
0.950 |
0.966 |
| O15 |
H15 |
0.950 |
0.967 |
| O17 |
H17 |
0.950 |
0.967 |
| O18 |
H18 |
0.950 |
0.967 |
Bond Angles for HPF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
121.0 |
120.0 |
| C2 |
C1 |
H1 |
120.6 |
120.0 |
| C1 |
C2 |
C3 |
114.2 |
120.2 |
| C1 |
C2 |
H2 |
123.3 |
119.9 |
| C6 |
C1 |
H1 |
118.3 |
120.0 |
| C1 |
C6 |
C5 |
121.0 |
119.8 |
| C1 |
C6 |
O7 |
119.2 |
120.1 |
| C3 |
C2 |
H2 |
122.5 |
119.9 |
| C2 |
C3 |
C4 |
124.9 |
120.1 |
| C2 |
C3 |
H3 |
118.5 |
119.9 |
| C4 |
C3 |
H3 |
116.6 |
119.9 |
| C3 |
C4 |
C5 |
117.1 |
120.0 |
| C3 |
C4 |
H4 |
121.8 |
120.0 |
| C5 |
C4 |
H4 |
121.0 |
120.0 |
| C4 |
C5 |
C6 |
121.7 |
119.9 |
| C4 |
C5 |
N8 |
119.2 |
120.1 |
| C6 |
C5 |
N8 |
119.2 |
120.1 |
| C5 |
C6 |
O7 |
119.8 |
120.1 |
| C5 |
N8 |
C9 |
117.2 |
120.0 |
| C5 |
N8 |
HN8 |
109.4 |
120.0 |
| C6 |
O7 |
HO7 |
119.2 |
106.8 |
| C9 |
N8 |
HN8 |
109.4 |
120.0 |
| N8 |
C9 |
C10 |
114.2 |
109.4 |
| N8 |
C9 |
O17 |
109.8 |
109.5 |
| N8 |
C9 |
H9 |
106.3 |
109.5 |
| C10 |
C9 |
O17 |
110.4 |
109.5 |
| C10 |
C9 |
H9 |
105.5 |
109.4 |
| C9 |
C10 |
C11 |
113.1 |
109.4 |
| C9 |
C10 |
O18 |
102.5 |
109.5 |
| C9 |
C10 |
H10 |
111.3 |
109.4 |
| O17 |
C9 |
H9 |
110.4 |
109.5 |
| C9 |
O17 |
H17 |
109.8 |
106.8 |
| C11 |
C10 |
O18 |
108.0 |
109.5 |
| C11 |
C10 |
H10 |
106.1 |
109.5 |
| C10 |
C11 |
O12 |
106.8 |
109.4 |
| C10 |
C11 |
H111 |
113.2 |
109.5 |
| C10 |
C11 |
H112 |
113.2 |
109.5 |
| O18 |
C10 |
H10 |
116.0 |
109.5 |
| C10 |
O18 |
H18 |
102.5 |
106.8 |
| O12 |
C11 |
H111 |
113.2 |
109.5 |
| O12 |
C11 |
H112 |
113.2 |
109.5 |
| C11 |
O12 |
P13 |
116.1 |
106.8 |
| H111 |
C11 |
H112 |
97.2 |
109.5 |
| O12 |
P13 |
O14 |
106.5 |
109.5 |
| O12 |
P13 |
O15 |
109.6 |
109.5 |
| O12 |
P13 |
O16 |
101.8 |
109.5 |
| O14 |
P13 |
O15 |
111.6 |
109.4 |
| O14 |
P13 |
O16 |
112.9 |
109.5 |
| P13 |
O14 |
H14 |
106.5 |
106.8 |
| O15 |
P13 |
O16 |
113.6 |
109.5 |
| P13 |
O15 |
H15 |
109.6 |
106.8 |
Torsion Angles for HPF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
179.8 |
| C2 |
C1 |
C6 |
C5 |
359.6 |
0.6 |
| C2 |
C1 |
C6 |
O7 |
179.7 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
0.9 |
360.0 |
| C1 |
C2 |
C3 |
H3 |
180.9 |
180.1 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
180.2 |
| C6 |
C1 |
C2 |
C3 |
359.6 |
359.7 |
| C6 |
C1 |
C2 |
H2 |
179.6 |
179.8 |
| C4 |
C5 |
C6 |
C1 |
0.8 |
359.4 |
| C1 |
C6 |
C5 |
N8 |
180.4 |
179.7 |
| C5 |
C6 |
C1 |
O7 |
179.9 |
180.6 |
| C1 |
C6 |
O7 |
HO7 |
180.0 |
89.9 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
179.8 |
| H1 |
C1 |
C2 |
C3 |
179.6 |
180.0 |
| H1 |
C1 |
C2 |
H2 |
359.6 |
360.0 |
| H1 |
C1 |
C6 |
C5 |
179.6 |
180.3 |
| H1 |
C1 |
C6 |
O7 |
359.7 |
359.8 |
| C3 |
C2 |
C1 |
C6 |
359.6 |
359.7 |
| C3 |
C2 |
C1 |
H1 |
179.6 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
| C2 |
C3 |
C4 |
C5 |
359.4 |
0.0 |
| C2 |
C3 |
C4 |
H4 |
179.4 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
179.6 |
179.8 |
| H2 |
C2 |
C1 |
H1 |
359.6 |
360.0 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
180.9 |
179.9 |
| H2 |
C2 |
C3 |
H3 |
0.9 |
0.0 |
| C4 |
C3 |
C2 |
H2 |
180.9 |
179.9 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
359.7 |
0.3 |
| C3 |
C4 |
C5 |
N8 |
180.1 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
0.9 |
0.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
179.9 |
| H3 |
C3 |
C4 |
C5 |
179.4 |
179.9 |
| H3 |
C3 |
C4 |
H4 |
359.4 |
359.9 |
| C1 |
C6 |
C5 |
C4 |
0.8 |
359.4 |
| C5 |
C4 |
C3 |
H3 |
179.4 |
179.9 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
N8 |
179.6 |
180.3 |
| C4 |
C5 |
C6 |
O7 |
180.6 |
180.0 |
| C4 |
C5 |
N8 |
C9 |
298.6 |
360.0 |
| C4 |
C5 |
N8 |
HN8 |
173.4 |
179.9 |
| H4 |
C4 |
C3 |
H3 |
359.4 |
359.9 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
179.7 |
180.3 |
| H4 |
C4 |
C5 |
N8 |
0.1 |
0.0 |
| C5 |
C6 |
C1 |
H1 |
179.6 |
180.3 |
| C1 |
C6 |
C5 |
O7 |
180.1 |
179.4 |
| C6 |
C5 |
C4 |
H4 |
179.7 |
180.3 |
| C4 |
C5 |
C6 |
N8 |
180.4 |
179.7 |
| C6 |
C5 |
N8 |
C9 |
119.0 |
179.7 |
| C6 |
C5 |
N8 |
HN8 |
353.7 |
359.7 |
| C5 |
C6 |
O7 |
HO7 |
0.1 |
269.4 |
| N8 |
C5 |
C4 |
H4 |
0.1 |
0.0 |
| C4 |
C5 |
N8 |
C6 |
179.6 |
180.3 |
| N8 |
C5 |
C6 |
O7 |
0.3 |
0.3 |
| C9 |
N8 |
C5 |
HN8 |
125.3 |
180.0 |
| C5 |
N8 |
C9 |
C10 |
308.3 |
145.0 |
| C5 |
N8 |
C9 |
O17 |
73.0 |
265.0 |
| C5 |
N8 |
C9 |
H9 |
192.4 |
25.0 |
| O7 |
C6 |
C1 |
H1 |
359.7 |
359.8 |
| C1 |
C6 |
O7 |
C5 |
179.9 |
180.6 |
| O7 |
C6 |
C5 |
N8 |
0.3 |
0.3 |
| C5 |
N8 |
C9 |
HN8 |
234.7 |
180.0 |
| C10 |
C9 |
N8 |
O17 |
235.3 |
240.0 |
| C10 |
C9 |
N8 |
H9 |
115.9 |
119.9 |
| N8 |
C9 |
C10 |
C11 |
178.9 |
185.0 |
| N8 |
C9 |
C10 |
O18 |
295.0 |
305.0 |
| N8 |
C9 |
C10 |
H10 |
59.7 |
65.0 |
| O17 |
C9 |
N8 |
H9 |
240.6 |
240.0 |
| N8 |
C9 |
O17 |
H17 |
180.0 |
300.0 |
| C5 |
N8 |
HN8 |
C9 |
129.7 |
180.0 |
| HN8 |
N8 |
C9 |
C10 |
73.6 |
325.0 |
| HN8 |
N8 |
C9 |
O17 |
198.3 |
85.0 |
| HN8 |
N8 |
C9 |
H9 |
317.7 |
205.1 |
| C10 |
C9 |
N8 |
HN8 |
73.6 |
325.0 |
| N8 |
C9 |
C10 |
O17 |
124.3 |
120.0 |
| N8 |
C9 |
C10 |
H9 |
243.6 |
240.0 |
| O17 |
C9 |
C10 |
H9 |
119.3 |
120.0 |
| C10 |
C9 |
O17 |
H17 |
306.8 |
59.9 |
| C11 |
C10 |
C9 |
O18 |
243.9 |
240.0 |
| C11 |
C10 |
C9 |
H10 |
119.3 |
120.0 |
| C9 |
C10 |
C11 |
O12 |
190.4 |
185.0 |
| C9 |
C10 |
C11 |
H111 |
65.1 |
305.0 |
| C9 |
C10 |
C11 |
H112 |
315.7 |
65.0 |
| O18 |
C10 |
C9 |
H10 |
235.3 |
240.0 |
| C9 |
C10 |
O18 |
H18 |
180.0 |
300.0 |
| O17 |
C9 |
N8 |
HN8 |
198.3 |
85.0 |
| N8 |
C9 |
O17 |
C10 |
233.2 |
240.0 |
| N8 |
C9 |
O17 |
H9 |
116.8 |
120.0 |
| C10 |
C9 |
O17 |
H9 |
243.7 |
240.0 |
| O17 |
C9 |
C10 |
C11 |
54.6 |
65.0 |
| O17 |
C9 |
C10 |
O18 |
170.7 |
185.0 |
| O17 |
C9 |
C10 |
H10 |
295.4 |
305.0 |
| H9 |
C9 |
N8 |
HN8 |
317.7 |
205.1 |
| N8 |
C9 |
H9 |
C10 |
121.7 |
119.9 |
| N8 |
C9 |
H9 |
O17 |
241.0 |
240.0 |
| C10 |
C9 |
H9 |
O17 |
119.3 |
120.0 |
| H9 |
C9 |
C10 |
C11 |
295.3 |
305.0 |
| H9 |
C9 |
C10 |
O18 |
51.4 |
65.0 |
| H9 |
C9 |
C10 |
H10 |
176.1 |
185.0 |
| H9 |
C9 |
O17 |
H17 |
63.1 |
179.9 |
| C11 |
C10 |
C9 |
O17 |
54.6 |
65.0 |
| C11 |
C10 |
C9 |
H9 |
295.3 |
305.0 |
| C9 |
C10 |
C11 |
O18 |
112.8 |
120.0 |
| C9 |
C10 |
C11 |
H10 |
237.8 |
240.1 |
| O18 |
C10 |
C11 |
H10 |
125.0 |
120.1 |
| C11 |
C10 |
O18 |
H18 |
299.7 |
60.0 |
| O12 |
C11 |
C10 |
H111 |
125.3 |
240.0 |
| O12 |
C11 |
C10 |
H112 |
234.7 |
120.0 |
| C10 |
C11 |
O12 |
P13 |
254.7 |
180.0 |
| H111 |
C11 |
C10 |
H112 |
109.5 |
239.9 |
| O18 |
C10 |
C9 |
O17 |
170.7 |
185.0 |
| O18 |
C10 |
C9 |
H9 |
51.4 |
65.0 |
| C9 |
C10 |
O18 |
C11 |
240.3 |
240.0 |
| C9 |
C10 |
O18 |
H10 |
121.5 |
120.0 |
| C11 |
C10 |
O18 |
H10 |
241.1 |
240.0 |
| O18 |
C10 |
C11 |
O12 |
77.6 |
65.0 |
| O18 |
C10 |
C11 |
H111 |
312.4 |
185.0 |
| O18 |
C10 |
C11 |
H112 |
202.9 |
305.0 |
| H10 |
C10 |
C9 |
O17 |
295.4 |
305.0 |
| H10 |
C10 |
C9 |
H9 |
176.1 |
185.0 |
| C9 |
C10 |
H10 |
C11 |
123.4 |
119.9 |
| C9 |
C10 |
H10 |
O18 |
243.3 |
240.0 |
| C11 |
C10 |
H10 |
O18 |
119.9 |
120.1 |
| H10 |
C10 |
C11 |
O12 |
312.6 |
305.0 |
| H10 |
C10 |
C11 |
H111 |
187.3 |
64.9 |
| H10 |
C10 |
C11 |
H112 |
77.9 |
185.0 |
| H10 |
C10 |
O18 |
H18 |
58.6 |
180.0 |
| O12 |
C11 |
C10 |
O18 |
77.6 |
65.0 |
| O12 |
C11 |
C10 |
H10 |
312.6 |
305.0 |
| C10 |
C11 |
O12 |
H111 |
234.7 |
120.0 |
| C10 |
C11 |
O12 |
H112 |
125.3 |
240.0 |
| H111 |
C11 |
O12 |
H112 |
250.5 |
120.1 |
| C11 |
O12 |
P13 |
O14 |
302.0 |
175.0 |
| C11 |
O12 |
P13 |
O15 |
62.9 |
295.0 |
| C11 |
O12 |
P13 |
O16 |
183.5 |
55.0 |
| H111 |
C11 |
C10 |
O18 |
312.4 |
185.0 |
| H111 |
C11 |
C10 |
H10 |
187.3 |
64.9 |
| C10 |
C11 |
H111 |
O12 |
121.7 |
240.0 |
| C10 |
C11 |
H111 |
H112 |
240.9 |
120.0 |
| O12 |
C11 |
H111 |
H112 |
119.2 |
240.0 |
| H111 |
C11 |
O12 |
P13 |
20.0 |
60.0 |
| H112 |
C11 |
C10 |
O18 |
202.9 |
305.0 |
| H112 |
C11 |
C10 |
H10 |
77.9 |
185.0 |
| C10 |
C11 |
H112 |
O12 |
238.3 |
120.0 |
| C10 |
C11 |
H112 |
H111 |
119.2 |
240.0 |
| O12 |
C11 |
H112 |
H111 |
240.9 |
120.0 |
| H112 |
C11 |
O12 |
P13 |
129.5 |
300.0 |
| P13 |
O12 |
C11 |
H111 |
20.0 |
60.0 |
| P13 |
O12 |
C11 |
H112 |
129.5 |
300.0 |
| O14 |
P13 |
O12 |
O15 |
239.1 |
240.0 |
| O14 |
P13 |
O12 |
O16 |
118.5 |
120.0 |
| O12 |
P13 |
O14 |
H14 |
180.0 |
180.0 |
| O15 |
P13 |
O12 |
O16 |
239.4 |
240.0 |
| O12 |
P13 |
O15 |
H15 |
180.0 |
300.0 |
| O12 |
P13 |
O14 |
O15 |
119.6 |
120.0 |
| O12 |
P13 |
O14 |
O16 |
249.0 |
240.0 |
| O15 |
P13 |
O14 |
O16 |
129.4 |
120.0 |
| O14 |
P13 |
O15 |
H15 |
297.8 |
60.1 |
| O12 |
P13 |
O15 |
O14 |
242.2 |
240.0 |
| O12 |
P13 |
O15 |
O16 |
113.2 |
120.0 |
| O14 |
P13 |
O15 |
O16 |
230.9 |
240.0 |
| O15 |
P13 |
O14 |
H14 |
60.4 |
60.0 |
| O12 |
P13 |
O16 |
O14 |
113.8 |
120.0 |
| O12 |
P13 |
O16 |
O15 |
242.2 |
240.0 |
| O14 |
P13 |
O16 |
O15 |
128.4 |
120.0 |
| O16 |
P13 |
O14 |
H14 |
290.9 |
300.0 |
| O16 |
P13 |
O15 |
H15 |
66.8 |
180.0 |
| H14 |
O14 |
P13 |
O15 |
60.4 |
60.0 |
| H14 |
O14 |
P13 |
O16 |
290.9 |
300.0 |
| H15 |
O15 |
P13 |
O16 |
66.8 |
180.0 |
| H17 |
O17 |
C9 |
H9 |
63.1 |
179.9 |
| H18 |
O18 |
C10 |
H10 |
58.6 |
180.0 |