PDB Chemical Component HOX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HOX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.333 |
1.208 |
| CA |
C |
1.529 |
1.507 |
| C |
OXT |
1.230 |
1.342 |
| N |
CA |
1.454 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.008 |
| OXT |
HXT |
0.950 |
0.967 |
| CA |
CB |
1.528 |
1.531 |
| CA |
HA |
1.100 |
1.089 |
| CB |
CG |
1.514 |
1.507 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.099 |
1.090 |
| CD1 |
CG |
1.392 |
1.383 |
| CG |
CD2 |
1.394 |
1.383 |
| CE1 |
CZ |
1.388 |
1.389 |
| CZ |
CE2 |
1.387 |
1.388 |
| CZ |
NZ |
1.384 |
1.397 |
| NZ |
HNZ |
1.000 |
0.970 |
| NZ |
HNZA |
1.000 |
0.971 |
| CD1 |
CE1 |
1.401 |
1.381 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
CE2 |
1.404 |
1.381 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CE2 |
HE2 |
1.080 |
1.080 |
Bond Angles for HOX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
122.8 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
CB |
108.7 |
109.5 |
| N |
CA |
HA |
108.1 |
109.5 |
| H |
N |
H2 |
109.5 |
111.1 |
| CB |
CA |
HA |
111.1 |
109.4 |
| CA |
CB |
CG |
115.8 |
109.5 |
| CA |
CB |
HB |
107.4 |
109.5 |
| CA |
CB |
HBA |
107.4 |
109.5 |
| CG |
CB |
HB |
107.4 |
109.5 |
| CG |
CB |
HBA |
107.4 |
109.5 |
| CB |
CG |
CD2 |
121.1 |
119.9 |
| HB |
CB |
HBA |
111.4 |
109.5 |
| CD1 |
CG |
CD2 |
118.1 |
120.1 |
| CG |
CD2 |
CE2 |
121.4 |
120.1 |
| CG |
CD2 |
HD2 |
119.3 |
119.9 |
| CE1 |
CZ |
CE2 |
120.0 |
119.9 |
| NZ |
CZ |
CE2 |
119.9 |
120.1 |
| CZ |
CE2 |
CD2 |
119.5 |
119.9 |
| CZ |
CE2 |
HE2 |
120.3 |
120.0 |
| CZ |
NZ |
HNZ |
109.5 |
120.0 |
| CZ |
NZ |
HNZA |
109.5 |
120.0 |
| HNZ |
NZ |
HNZA |
109.4 |
120.0 |
| CE1 |
CD1 |
HD1 |
119.4 |
120.0 |
| CD1 |
CE1 |
HE1 |
120.1 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.3 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.2 |
120.1 |
Torsion Angles for HOX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| CA |
C |
OXT |
HXT |
180.5 |
180.3 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
N |
HA |
120.6 |
120.0 |
| N |
CA |
CB |
CG |
190.1 |
295.0 |
| N |
CA |
CB |
HB |
310.1 |
55.0 |
| N |
CA |
CB |
HBA |
70.1 |
175.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
58.9 |
300.0 |
| H |
N |
CA |
HA |
298.2 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
CB |
178.9 |
64.0 |
| H2 |
N |
CA |
HA |
58.3 |
304.0 |
| CB |
CA |
N |
H |
58.9 |
300.0 |
| CB |
CA |
N |
H2 |
178.9 |
64.0 |
| N |
CA |
CB |
HA |
241.2 |
240.0 |
| CG |
CB |
CA |
HB |
240.0 |
240.0 |
| CG |
CB |
CA |
HBA |
120.0 |
120.0 |
| CA |
CB |
CG |
CD2 |
279.9 |
90.0 |
| HB |
CB |
CA |
HBA |
240.0 |
240.0 |
| HA |
CA |
N |
H |
298.2 |
180.0 |
| HA |
CA |
N |
H2 |
58.3 |
304.0 |
| N |
CA |
HA |
CB |
119.1 |
120.0 |
| HA |
CA |
CB |
CG |
308.9 |
55.0 |
| HA |
CA |
CB |
HB |
68.9 |
175.0 |
| HA |
CA |
CB |
HBA |
188.9 |
295.0 |
| CG |
CB |
CA |
HA |
308.9 |
55.0 |
| CA |
CB |
CG |
HB |
120.0 |
120.0 |
| CA |
CB |
CG |
HBA |
240.0 |
240.0 |
| HB |
CB |
CG |
HBA |
120.0 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
182.4 |
180.3 |
| CB |
CG |
CD2 |
CE2 |
182.8 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
2.8 |
0.0 |
| HB |
CB |
CA |
HA |
68.9 |
175.0 |
| CA |
CB |
HB |
CG |
234.8 |
240.0 |
| CA |
CB |
HB |
HBA |
117.4 |
120.0 |
| CG |
CB |
HB |
HBA |
242.6 |
240.0 |
| HB |
CB |
CG |
CD2 |
159.9 |
330.0 |
| HBA |
CB |
CA |
HA |
188.9 |
295.0 |
| CA |
CB |
HBA |
CG |
125.2 |
120.0 |
| CA |
CB |
HBA |
HB |
242.6 |
240.0 |
| CG |
CB |
HBA |
HB |
117.4 |
120.0 |
| HBA |
CB |
CG |
CD2 |
39.9 |
210.0 |
| CD1 |
CG |
CB |
HB |
342.2 |
150.3 |
| CD1 |
CG |
CB |
HBA |
222.3 |
30.3 |
| CB |
CG |
CD1 |
CD2 |
177.7 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
0.4 |
359.7 |
| CD1 |
CG |
CD2 |
HD2 |
180.4 |
179.7 |
| CD2 |
CG |
CB |
HB |
159.9 |
330.0 |
| CD2 |
CG |
CB |
HBA |
39.9 |
210.0 |
| CZ |
CE2 |
CD2 |
CG |
359.9 |
359.9 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
HE2 |
180.0 |
180.3 |
| NZ |
CZ |
CE1 |
CE2 |
181.4 |
180.4 |
| CE1 |
CZ |
CE2 |
CD2 |
359.7 |
0.4 |
| CE1 |
CZ |
CE2 |
HE2 |
179.7 |
180.0 |
| CE1 |
CZ |
NZ |
HNZ |
180.0 |
179.7 |
| CE1 |
CZ |
NZ |
HNZA |
300.0 |
359.6 |
| CG |
CD2 |
CE2 |
CZ |
359.9 |
359.9 |
| CE2 |
CZ |
NZ |
HNZ |
1.4 |
0.1 |
| CE2 |
CZ |
NZ |
HNZA |
121.4 |
180.0 |
| CZ |
CE2 |
CD2 |
HD2 |
179.9 |
179.9 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.4 |
| CE1 |
CZ |
NZ |
CE2 |
178.6 |
179.6 |
| NZ |
CZ |
CE2 |
CD2 |
178.3 |
180.0 |
| NZ |
CZ |
CE2 |
HE2 |
358.3 |
359.6 |
| HNZ |
NZ |
CZ |
HNZA |
240.0 |
180.1 |
| HNZ |
NZ |
CZ |
CE2 |
1.4 |
0.1 |
| CZ |
NZ |
HNZ |
HNZA |
120.0 |
179.9 |
| HNZA |
NZ |
CZ |
CE2 |
121.4 |
180.0 |
| CZ |
NZ |
HNZA |
HNZ |
240.0 |
180.1 |
| CE1 |
CD1 |
CG |
CD2 |
359.5 |
0.3 |
| CD1 |
CE1 |
CZ |
CE2 |
0.2 |
359.6 |
| HD1 |
CD1 |
CG |
CD2 |
179.5 |
180.3 |
| HD1 |
CD1 |
CE1 |
HE1 |
0.2 |
360.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
179.6 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
360.0 |
0.3 |
| HE1 |
CE1 |
CZ |
CE2 |
180.2 |
179.6 |
| HE1 |
CE1 |
CD1 |
HD1 |
0.2 |
360.0 |
| CZ |
CE2 |
HE2 |
CD2 |
180.0 |
180.4 |
| HE2 |
CE2 |
CD2 |
HD2 |
360.0 |
0.3 |