PDB Chemical Component HOM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HOM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
CA2 |
1.540 |
1.411 |
| CA |
CA9 |
1.360 |
1.358 |
| CA |
CB |
1.553 |
1.506 |
| CA2 |
OA2 |
1.223 |
1.218 |
| CA2 |
OA3 |
1.459 |
1.341 |
| CA3 |
CA4 |
1.426 |
1.387 |
| CA3 |
CA8 |
1.432 |
1.406 |
| CA3 |
OA3 |
1.471 |
1.350 |
| CA4 |
CA5 |
1.422 |
1.384 |
| CA4 |
HA41 |
1.104 |
1.080 |
| CA5 |
CA6 |
1.413 |
1.394 |
| CA5 |
OA4 |
1.442 |
1.357 |
| CA6 |
CA7 |
1.428 |
1.365 |
| CA6 |
HA61 |
1.103 |
1.080 |
| CA7 |
CA8 |
1.431 |
1.399 |
| CA7 |
HA71 |
1.102 |
1.080 |
| CA8 |
CA9 |
1.551 |
1.464 |
| CA9 |
CB8 |
1.557 |
1.507 |
| CB |
CB7 |
1.536 |
1.529 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.114 |
1.090 |
| CB7 |
OA1 |
1.243 |
1.429 |
| CB7 |
HB71 |
1.115 |
1.090 |
| CB7 |
HB72 |
1.115 |
1.089 |
| CB8 |
HB81 |
1.115 |
1.090 |
| CB8 |
HB82 |
1.115 |
1.089 |
| CB8 |
HB83 |
1.114 |
1.090 |
| OA4 |
HO41 |
0.950 |
0.967 |
| OA1 |
HO11 |
0.950 |
0.967 |
Bond Angles for HOM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA2 |
CA |
CA9 |
119.8 |
119.8 |
| CA2 |
CA |
CB |
118.8 |
120.1 |
| CA |
CA2 |
OA2 |
119.3 |
119.1 |
| CA |
CA2 |
OA3 |
122.2 |
121.7 |
| CA9 |
CA |
CB |
121.4 |
120.2 |
| CA |
CA9 |
CA8 |
119.3 |
118.2 |
| CA |
CA9 |
CB8 |
121.1 |
120.9 |
| CA |
CB |
CB7 |
114.1 |
109.5 |
| CA |
CB |
HB1 |
110.5 |
109.5 |
| CA |
CB |
HB2 |
110.5 |
109.5 |
| OA2 |
CA2 |
OA3 |
118.4 |
119.2 |
| CA2 |
OA3 |
CA3 |
116.4 |
121.5 |
| CA4 |
CA3 |
CA8 |
119.5 |
119.4 |
| CA4 |
CA3 |
OA3 |
118.3 |
120.8 |
| CA3 |
CA4 |
CA5 |
120.7 |
119.8 |
| CA3 |
CA4 |
HA41 |
119.8 |
120.0 |
| CA8 |
CA3 |
OA3 |
122.2 |
119.8 |
| CA3 |
CA8 |
CA7 |
119.4 |
120.0 |
| CA3 |
CA8 |
CA9 |
120.1 |
119.0 |
| CA5 |
CA4 |
HA41 |
119.5 |
120.1 |
| CA4 |
CA5 |
CA6 |
120.1 |
120.5 |
| CA4 |
CA5 |
OA4 |
120.2 |
119.8 |
| CA6 |
CA5 |
OA4 |
119.7 |
119.7 |
| CA5 |
CA6 |
CA7 |
119.9 |
120.4 |
| CA5 |
CA6 |
HA61 |
119.5 |
119.8 |
| CA5 |
OA4 |
HO41 |
120.2 |
106.8 |
| CA7 |
CA6 |
HA61 |
120.6 |
119.8 |
| CA6 |
CA7 |
CA8 |
120.4 |
119.8 |
| CA6 |
CA7 |
HA71 |
119.7 |
120.1 |
| CA8 |
CA7 |
HA71 |
120.0 |
120.1 |
| CA7 |
CA8 |
CA9 |
120.5 |
121.0 |
| CA8 |
CA9 |
CB8 |
119.6 |
120.9 |
| CA9 |
CB8 |
HB81 |
121.1 |
109.4 |
| CA9 |
CB8 |
HB82 |
108.0 |
109.5 |
| CA9 |
CB8 |
HB83 |
108.0 |
109.5 |
| CB7 |
CB |
HB1 |
110.5 |
109.5 |
| CB7 |
CB |
HB2 |
110.5 |
109.5 |
| CB |
CB7 |
OA1 |
121.6 |
109.5 |
| CB |
CB7 |
HB71 |
107.9 |
109.5 |
| CB |
CB7 |
HB72 |
107.9 |
109.5 |
| HB1 |
CB |
HB2 |
99.8 |
109.4 |
| OA1 |
CB7 |
HB71 |
107.8 |
109.5 |
| OA1 |
CB7 |
HB72 |
107.8 |
109.5 |
| CB7 |
OA1 |
HO11 |
121.6 |
106.9 |
| HB71 |
CB7 |
HB72 |
102.0 |
109.4 |
| HB81 |
CB8 |
HB82 |
108.0 |
109.5 |
| HB81 |
CB8 |
HB83 |
108.1 |
109.5 |
| HB82 |
CB8 |
HB83 |
101.9 |
109.5 |
Torsion Angles for HOM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA9 |
CA |
CA2 |
CB |
179.6 |
180.0 |
| CA2 |
CA |
CA9 |
CA8 |
359.6 |
0.3 |
| CA2 |
CA |
CA9 |
CB8 |
179.8 |
180.0 |
| CA2 |
CA |
CB |
CB7 |
279.4 |
270.0 |
| CA2 |
CA |
CB |
HB1 |
44.6 |
30.1 |
| CA2 |
CA |
CB |
HB2 |
154.2 |
150.0 |
| OA2 |
CA2 |
CA |
OA3 |
179.8 |
180.1 |
| CA |
CA2 |
OA3 |
CA3 |
359.7 |
0.0 |
| CA2 |
CA |
CA9 |
CB |
180.4 |
180.0 |
| CA9 |
CA |
CA2 |
OA2 |
180.5 |
180.1 |
| CA9 |
CA |
CA2 |
OA3 |
0.7 |
360.0 |
| CA9 |
CA |
CB |
CB7 |
99.7 |
90.0 |
| CA9 |
CA |
CB |
HB1 |
225.0 |
210.0 |
| CA9 |
CA |
CB |
HB2 |
334.5 |
329.9 |
| CA3 |
CA8 |
CA9 |
CA |
359.8 |
359.5 |
| CA7 |
CA8 |
CA9 |
CA |
180.1 |
180.3 |
| CA8 |
CA9 |
CA |
CB8 |
179.8 |
180.3 |
| CA |
CA9 |
CB8 |
HB81 |
180.0 |
180.0 |
| CA |
CA9 |
CB8 |
HB82 |
305.2 |
300.0 |
| CA |
CA9 |
CB8 |
HB83 |
54.7 |
60.0 |
| CA2 |
CA |
CB |
CA9 |
179.6 |
180.0 |
| CB |
CA |
CA2 |
OA2 |
0.9 |
0.0 |
| CB |
CA |
CA2 |
OA3 |
181.1 |
179.9 |
| CB |
CA |
CA9 |
CA8 |
179.2 |
180.3 |
| CB |
CA |
CA9 |
CB8 |
359.4 |
0.0 |
| CB7 |
CB |
CA |
HB1 |
234.8 |
240.0 |
| CB7 |
CB |
CA |
HB2 |
125.2 |
120.0 |
| CA |
CB |
CB7 |
OA1 |
351.6 |
180.0 |
| CA |
CB |
CB7 |
HB71 |
116.8 |
300.1 |
| CA |
CB |
CB7 |
HB72 |
226.3 |
60.0 |
| HB1 |
CB |
CA |
HB2 |
250.4 |
240.1 |
| OA2 |
CA2 |
CA |
CA9 |
180.5 |
180.1 |
| OA2 |
CA2 |
CA |
CB |
0.9 |
0.0 |
| CA |
CA2 |
OA2 |
OA3 |
180.2 |
179.9 |
| OA2 |
CA2 |
OA3 |
CA3 |
179.9 |
180.0 |
| OA3 |
CA2 |
CA |
CA9 |
0.7 |
360.0 |
| OA3 |
CA2 |
CA |
CB |
181.1 |
179.9 |
| CA |
CA2 |
OA3 |
OA2 |
179.8 |
180.1 |
| CA4 |
CA3 |
OA3 |
CA2 |
179.7 |
179.9 |
| CA8 |
CA3 |
OA3 |
CA2 |
359.7 |
359.7 |
| CA2 |
OA3 |
CA3 |
CA4 |
179.7 |
179.9 |
| CA8 |
CA3 |
CA4 |
OA3 |
180.0 |
180.2 |
| CA4 |
CA3 |
CA8 |
CA7 |
0.3 |
359.5 |
| CA4 |
CA3 |
CA8 |
CA9 |
180.5 |
180.3 |
| CA5 |
CA4 |
CA3 |
HA41 |
180.0 |
179.9 |
| CA3 |
CA4 |
CA5 |
CA6 |
359.9 |
0.0 |
| CA3 |
CA4 |
CA5 |
OA4 |
180.0 |
180.1 |
| CA |
CA9 |
CA8 |
CA3 |
359.8 |
359.5 |
| CA2 |
OA3 |
CA3 |
CA8 |
359.7 |
359.7 |
| CA4 |
CA3 |
CA8 |
OA3 |
180.0 |
179.8 |
| CA8 |
CA3 |
CA4 |
CA5 |
359.8 |
0.2 |
| CA8 |
CA3 |
CA4 |
HA41 |
179.9 |
180.3 |
| CA6 |
CA7 |
CA8 |
CA3 |
359.9 |
0.5 |
| CA3 |
CA8 |
CA7 |
HA71 |
179.9 |
180.3 |
| CA7 |
CA8 |
CA3 |
CA9 |
179.7 |
179.2 |
| CA3 |
CA8 |
CA9 |
CB8 |
179.6 |
179.7 |
| CA4 |
CA3 |
OA3 |
CA8 |
180.0 |
180.2 |
| OA3 |
CA3 |
CA4 |
CA5 |
179.8 |
180.0 |
| OA3 |
CA3 |
CA4 |
HA41 |
359.8 |
0.1 |
| OA3 |
CA3 |
CA8 |
CA7 |
180.3 |
179.7 |
| OA3 |
CA3 |
CA8 |
CA9 |
0.6 |
0.5 |
| CA5 |
CA4 |
CA3 |
CA8 |
359.8 |
0.2 |
| CA5 |
CA4 |
CA3 |
OA3 |
179.8 |
180.0 |
| CA3 |
CA4 |
CA5 |
HA41 |
180.0 |
180.1 |
| CA6 |
CA5 |
CA4 |
OA4 |
179.9 |
180.0 |
| CA4 |
CA5 |
CA6 |
CA7 |
0.3 |
360.0 |
| CA4 |
CA5 |
CA6 |
HA61 |
180.4 |
180.0 |
| CA4 |
CA5 |
OA4 |
HO41 |
179.9 |
90.0 |
| HA41 |
CA4 |
CA3 |
CA8 |
179.9 |
180.3 |
| HA41 |
CA4 |
CA3 |
OA3 |
359.8 |
0.1 |
| CA3 |
CA4 |
HA41 |
CA5 |
180.0 |
179.9 |
| HA41 |
CA4 |
CA5 |
CA6 |
179.8 |
180.0 |
| HA41 |
CA4 |
CA5 |
OA4 |
359.9 |
0.0 |
| CA6 |
CA5 |
CA4 |
HA41 |
179.8 |
180.0 |
| CA4 |
CA5 |
CA6 |
OA4 |
180.1 |
180.0 |
| CA6 |
CA5 |
OA4 |
HO41 |
0.0 |
270.0 |
| CA7 |
CA6 |
CA5 |
HA61 |
179.9 |
179.9 |
| CA5 |
CA6 |
CA7 |
CA8 |
359.8 |
359.8 |
| CA5 |
CA6 |
CA7 |
HA71 |
179.8 |
179.9 |
| OA4 |
CA5 |
CA4 |
HA41 |
359.9 |
0.0 |
| CA4 |
CA5 |
OA4 |
CA6 |
179.9 |
180.0 |
| OA4 |
CA5 |
CA6 |
CA7 |
180.2 |
179.9 |
| OA4 |
CA5 |
CA6 |
HA61 |
0.3 |
360.0 |
| CA3 |
CA8 |
CA7 |
CA6 |
359.9 |
0.5 |
| CA7 |
CA6 |
CA5 |
OA4 |
180.2 |
179.9 |
| CA5 |
CA6 |
CA7 |
HA61 |
180.1 |
180.1 |
| CA8 |
CA7 |
CA6 |
HA71 |
180.0 |
179.8 |
| CA6 |
CA7 |
CA8 |
CA9 |
179.6 |
179.6 |
| HA61 |
CA6 |
CA5 |
OA4 |
0.3 |
360.0 |
| CA5 |
CA6 |
HA61 |
CA7 |
179.9 |
179.9 |
| HA61 |
CA6 |
CA7 |
CA8 |
179.7 |
179.7 |
| HA61 |
CA6 |
CA7 |
HA71 |
359.8 |
359.9 |
| CA |
CA9 |
CA8 |
CA7 |
180.1 |
180.3 |
| CA7 |
CA8 |
CA3 |
OA3 |
180.3 |
179.7 |
| CA3 |
CA8 |
CA7 |
CA9 |
180.3 |
180.9 |
| CA8 |
CA7 |
CA6 |
HA61 |
179.7 |
179.7 |
| CA6 |
CA7 |
CA8 |
HA71 |
180.0 |
180.2 |
| CA7 |
CA8 |
CA9 |
CB8 |
359.9 |
0.6 |
| HA71 |
CA7 |
CA6 |
HA61 |
359.8 |
359.9 |
| CA6 |
CA7 |
HA71 |
CA8 |
180.0 |
179.8 |
| HA71 |
CA7 |
CA8 |
CA9 |
359.6 |
359.5 |
| CA8 |
CA9 |
CA |
CB |
179.2 |
180.3 |
| CA |
CA9 |
CA8 |
CB8 |
180.2 |
179.7 |
| CA9 |
CA8 |
CA3 |
OA3 |
0.6 |
0.5 |
| CA3 |
CA8 |
CA9 |
CA7 |
179.7 |
179.1 |
| CA9 |
CA8 |
CA7 |
HA71 |
359.6 |
359.5 |
| CA8 |
CA9 |
CB8 |
HB81 |
0.2 |
359.7 |
| CA8 |
CA9 |
CB8 |
HB82 |
125.4 |
119.7 |
| CA8 |
CA9 |
CB8 |
HB83 |
234.9 |
239.7 |
| CB8 |
CA9 |
CA |
CB |
359.4 |
0.0 |
| CA |
CA9 |
CB8 |
CA8 |
179.8 |
180.3 |
| HB81 |
CB8 |
CA9 |
HB82 |
234.8 |
240.0 |
| HB81 |
CB8 |
CA9 |
HB83 |
125.3 |
120.0 |
| HB82 |
CB8 |
CA9 |
HB83 |
250.5 |
240.0 |
| CA |
CB |
CB7 |
HB1 |
125.2 |
120.0 |
| CA |
CB |
CB7 |
HB2 |
234.8 |
240.0 |
| HB1 |
CB |
CB7 |
HB2 |
109.5 |
120.0 |
| OA1 |
CB7 |
CB |
HB71 |
234.8 |
240.0 |
| OA1 |
CB7 |
CB |
HB72 |
125.2 |
120.1 |
| CB |
CB7 |
OA1 |
HO11 |
180.0 |
180.0 |
| HB71 |
CB7 |
CB |
HB72 |
250.5 |
240.1 |
| CA |
CB |
HB1 |
CB7 |
232.8 |
239.9 |
| CA |
CB |
HB1 |
HB2 |
116.4 |
119.9 |
| CB7 |
CB |
HB1 |
HB2 |
243.6 |
240.0 |
| HB1 |
CB |
CB7 |
OA1 |
226.4 |
60.0 |
| HB1 |
CB |
CB7 |
HB71 |
351.6 |
180.0 |
| HB1 |
CB |
CB7 |
HB72 |
101.1 |
299.9 |
| CA |
CB |
HB2 |
CB7 |
127.2 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
243.6 |
240.0 |
| CB7 |
CB |
HB2 |
HB1 |
116.4 |
120.0 |
| HB2 |
CB |
CB7 |
OA1 |
116.8 |
300.1 |
| HB2 |
CB |
CB7 |
HB71 |
242.0 |
60.1 |
| HB2 |
CB |
CB7 |
HB72 |
351.6 |
180.0 |
| OA1 |
CB7 |
CB |
HB1 |
226.4 |
60.0 |
| OA1 |
CB7 |
CB |
HB2 |
116.8 |
300.1 |
| CB |
CB7 |
OA1 |
HB71 |
125.3 |
120.0 |
| CB |
CB7 |
OA1 |
HB72 |
234.7 |
239.9 |
| HB71 |
CB7 |
OA1 |
HB72 |
109.5 |
119.9 |
| HB71 |
CB7 |
CB |
HB1 |
351.6 |
180.0 |
| HB71 |
CB7 |
CB |
HB2 |
242.0 |
60.1 |
| CB |
CB7 |
HB71 |
OA1 |
227.0 |
239.9 |
| CB |
CB7 |
HB71 |
HB72 |
113.5 |
120.0 |
| OA1 |
CB7 |
HB71 |
HB72 |
246.6 |
240.0 |
| HB71 |
CB7 |
OA1 |
HO11 |
54.7 |
60.0 |
| HB72 |
CB7 |
CB |
HB1 |
101.1 |
299.9 |
| HB72 |
CB7 |
CB |
HB2 |
351.6 |
180.0 |
| CB |
CB7 |
HB72 |
OA1 |
133.0 |
120.1 |
| CB |
CB7 |
HB72 |
HB71 |
246.5 |
240.1 |
| OA1 |
CB7 |
HB72 |
HB71 |
113.4 |
120.0 |
| HB72 |
CB7 |
OA1 |
HO11 |
305.3 |
300.1 |
| CA9 |
CB8 |
HB81 |
HB82 |
125.2 |
120.0 |
| CA9 |
CB8 |
HB81 |
HB83 |
234.7 |
240.0 |
| HB82 |
CB8 |
HB81 |
HB83 |
109.6 |
120.1 |
| CA9 |
CB8 |
HB82 |
HB81 |
227.4 |
240.0 |
| CA9 |
CB8 |
HB82 |
HB83 |
113.6 |
120.0 |
| HB81 |
CB8 |
HB82 |
HB83 |
246.3 |
240.0 |
| CA9 |
CB8 |
HB83 |
HB81 |
132.7 |
119.9 |
| CA9 |
CB8 |
HB83 |
HB82 |
246.4 |
240.0 |
| HB81 |
CB8 |
HB83 |
HB82 |
113.7 |
120.0 |
| HO11 |
OA1 |
CB7 |
HB71 |
54.7 |
60.0 |
| HO11 |
OA1 |
CB7 |
HB72 |
305.3 |
300.1 |