PDB Chemical Component HO4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HO4
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C11 |
C10 |
1.105 |
1.174 |
| O2' |
C2' |
1.433 |
1.429 |
| C10 |
C7 |
1.273 |
1.432 |
| C2' |
C3' |
1.518 |
1.545 |
| C2' |
C1' |
1.505 |
1.545 |
| C7 |
C8 |
1.338 |
1.359 |
| C7 |
C5 |
1.351 |
1.470 |
| C8 |
N9 |
1.324 |
1.367 |
| C3' |
O3' |
1.427 |
1.429 |
| C3' |
C4' |
1.512 |
1.545 |
| N6 |
C6 |
1.337 |
1.384 |
| C5 |
C6 |
1.380 |
1.401 |
| C5 |
C4 |
1.357 |
1.405 |
| N9 |
C1' |
1.471 |
1.465 |
| N9 |
C4 |
1.346 |
1.369 |
| C1' |
O4' |
1.383 |
1.444 |
| C6 |
N1 |
1.327 |
1.330 |
| C4 |
N3 |
1.318 |
1.332 |
| C4' |
C5' |
1.486 |
1.530 |
| C4' |
O4' |
1.483 |
1.444 |
| C5' |
O5' |
1.398 |
1.430 |
| N1 |
C2 |
1.397 |
1.321 |
| N3 |
C2 |
1.389 |
1.315 |
| C11 |
H1 |
1.060 |
1.050 |
| C8 |
H2 |
1.080 |
1.080 |
| N6 |
H3 |
1.000 |
0.969 |
| N6 |
H4 |
0.999 |
0.970 |
| C2 |
H5 |
1.080 |
1.080 |
| C1' |
H6 |
1.100 |
1.090 |
| C4' |
H7 |
1.101 |
1.090 |
| C5' |
H8 |
1.100 |
1.090 |
| C5' |
H9 |
1.100 |
1.090 |
| O5' |
H10 |
0.950 |
0.967 |
| C3' |
H11 |
1.100 |
1.090 |
| O3' |
H12 |
0.950 |
0.967 |
| C2' |
H13 |
1.100 |
1.091 |
| O2' |
H14 |
0.950 |
0.967 |
Bond Angles for HO4
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C7 |
175.4 |
179.9 |
| C10 |
C11 |
H1 |
180.0 |
180.0 |
| O2' |
C2' |
H13 |
112.4 |
110.6 |
| C10 |
C7 |
C8 |
115.7 |
126.8 |
| C10 |
C7 |
C5 |
132.2 |
126.8 |
| C2' |
C3' |
H11 |
110.6 |
110.7 |
| C2' |
C1' |
H6 |
110.0 |
110.4 |
| C8 |
C7 |
C5 |
111.9 |
106.4 |
| C7 |
C8 |
N9 |
106.3 |
109.6 |
| C7 |
C8 |
H2 |
126.8 |
125.2 |
| C7 |
C5 |
C6 |
137.0 |
135.0 |
| C7 |
C5 |
C4 |
103.4 |
106.2 |
| C8 |
N9 |
C1' |
128.0 |
124.8 |
| C8 |
N9 |
C4 |
108.4 |
110.4 |
| N9 |
C8 |
H2 |
126.9 |
125.2 |
| O3' |
C3' |
H11 |
111.9 |
110.4 |
| C3' |
O3' |
H12 |
109.5 |
114.0 |
| C3' |
C4' |
H7 |
110.5 |
110.4 |
| N6 |
C6 |
N1 |
118.9 |
120.8 |
| C6 |
C5 |
C4 |
119.7 |
118.8 |
| C5 |
C6 |
N1 |
121.1 |
118.3 |
| C5 |
C4 |
N3 |
120.8 |
118.5 |
| N9 |
C1' |
O4' |
110.6 |
110.4 |
| N9 |
C1' |
H6 |
110.5 |
110.3 |
| O4' |
C1' |
H6 |
111.9 |
110.3 |
| C6 |
N1 |
C2 |
118.8 |
121.0 |
| C4' |
C5' |
O5' |
103.8 |
109.5 |
| C5' |
C4' |
H7 |
110.8 |
110.3 |
| C4' |
C5' |
H8 |
110.9 |
109.5 |
| C4' |
C5' |
H9 |
110.9 |
109.5 |
| O5' |
C5' |
H8 |
110.9 |
109.5 |
| O5' |
C5' |
H9 |
110.9 |
109.4 |
| C5' |
O5' |
H10 |
109.5 |
114.0 |
| N1 |
C2 |
H5 |
120.4 |
118.6 |
| N3 |
C2 |
H5 |
120.4 |
118.7 |
| H3 |
N6 |
H4 |
109.5 |
120.0 |
| H8 |
C5' |
H9 |
109.4 |
109.5 |
Torsion Angles for HO4
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C7 |
C8 |
56.8 |
132.8 |
| C11 |
C10 |
C7 |
C5 |
230.5 |
312.5 |
| O2' |
C2' |
C3' |
H11 |
112.5 |
122.6 |
| O2' |
C2' |
C1' |
H6 |
32.9 |
23.8 |
| C7 |
C10 |
C11 |
H1 |
161.4 |
172.4 |
| C8 |
C7 |
C10 |
C5 |
186.3 |
180.3 |
| C10 |
C7 |
C8 |
N9 |
177.7 |
179.9 |
| C10 |
C7 |
C8 |
H2 |
357.7 |
360.0 |
| C10 |
C7 |
C5 |
C6 |
5.0 |
0.1 |
| C10 |
C7 |
C5 |
C4 |
183.9 |
180.0 |
| C3' |
C2' |
C1' |
H6 |
276.9 |
265.1 |
| O3' |
C3' |
C2' |
H11 |
234.9 |
237.4 |
| C2' |
C3' |
O3' |
H12 |
180.0 |
183.9 |
| C2' |
C3' |
C4' |
H7 |
105.8 |
94.9 |
| N9 |
C1' |
C2' |
H6 |
238.1 |
237.7 |
| O4' |
C1' |
C2' |
H6 |
119.8 |
118.8 |
| C10 |
C7 |
C8 |
C5 |
174.9 |
179.7 |
| C8 |
C7 |
C5 |
C6 |
178.8 |
179.8 |
| C8 |
C7 |
C5 |
C4 |
357.7 |
359.7 |
| C7 |
C8 |
N9 |
C1' |
177.5 |
180.0 |
| C7 |
C8 |
N9 |
C4 |
358.0 |
359.9 |
| N9 |
C8 |
C7 |
H2 |
180.0 |
179.9 |
| C10 |
C7 |
C5 |
C8 |
186.2 |
180.3 |
| C5 |
C7 |
C8 |
N9 |
2.8 |
0.2 |
| C5 |
C7 |
C8 |
H2 |
182.8 |
180.3 |
| C6 |
C5 |
C7 |
C4 |
181.1 |
180.1 |
| C7 |
C5 |
C6 |
N1 |
179.9 |
179.9 |
| C7 |
C5 |
C4 |
N3 |
182.3 |
180.0 |
| N9 |
C8 |
C7 |
C5 |
2.8 |
0.2 |
| C7 |
C8 |
N9 |
H2 |
180.0 |
180.1 |
| C8 |
N9 |
C1' |
O4' |
58.5 |
23.6 |
| C8 |
N9 |
C1' |
H6 |
182.9 |
145.8 |
| C2' |
C3' |
O3' |
H11 |
124.4 |
122.7 |
| O3' |
C3' |
C4' |
H7 |
347.4 |
336.2 |
| C5' |
C4' |
C3' |
H7 |
121.5 |
122.3 |
| C3' |
C4' |
C5' |
H8 |
316.3 |
301.8 |
| C3' |
C4' |
C5' |
H9 |
78.0 |
61.9 |
| N6 |
C6 |
C5 |
C4 |
181.3 |
180.1 |
| C5 |
C6 |
N6 |
N1 |
179.8 |
180.0 |
| N6 |
C6 |
N1 |
C2 |
178.8 |
180.0 |
| C7 |
C5 |
C6 |
C4 |
178.8 |
179.9 |
| N6 |
C6 |
C5 |
N1 |
180.2 |
180.0 |
| C6 |
C5 |
C4 |
N3 |
1.5 |
359.9 |
| C5 |
C6 |
N1 |
C2 |
359.0 |
0.0 |
| C7 |
C5 |
C4 |
C6 |
180.9 |
180.1 |
| C8 |
N9 |
C4 |
C5 |
0.6 |
359.9 |
| C4 |
C5 |
C6 |
N1 |
1.1 |
0.0 |
| C2' |
C1' |
N9 |
H6 |
121.6 |
122.4 |
| C8 |
N9 |
C1' |
C4 |
180.6 |
179.9 |
| C1' |
N9 |
C8 |
H2 |
357.5 |
359.9 |
| O4' |
C1' |
N9 |
H6 |
235.6 |
237.8 |
| C8 |
N9 |
C4 |
C1' |
179.5 |
180.1 |
| C4 |
N9 |
C8 |
H2 |
178.0 |
179.9 |
| C2' |
C1' |
O4' |
H6 |
241.5 |
241.1 |
| N9 |
C1' |
O4' |
H6 |
123.6 |
122.2 |
| N1 |
C6 |
C5 |
C4 |
1.1 |
0.0 |
| C6 |
N1 |
C2 |
H5 |
178.5 |
179.9 |
| C8 |
N9 |
C4 |
N3 |
179.2 |
180.2 |
| C4 |
N3 |
C2 |
H5 |
184.0 |
180.0 |
| C3' |
C4' |
C5' |
H7 |
238.7 |
237.7 |
| O5' |
C5' |
C4' |
H8 |
240.9 |
240.0 |
| O5' |
C5' |
C4' |
H9 |
119.1 |
119.9 |
| C4' |
C5' |
O5' |
H10 |
180.0 |
180.0 |
| H8 |
C5' |
C4' |
H9 |
238.2 |
240.0 |
| C4' |
O4' |
C1' |
H6 |
72.5 |
78.4 |
| O5' |
C5' |
C4' |
H7 |
318.4 |
304.1 |
| C4' |
C5' |
O5' |
H8 |
119.1 |
120.0 |
| C4' |
C5' |
O5' |
H9 |
240.9 |
240.0 |
| H8 |
C5' |
O5' |
H9 |
121.8 |
120.0 |
| N3 |
C2 |
N1 |
H5 |
180.0 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
356.1 |
0.1 |
| N1 |
C2 |
N3 |
H5 |
180.0 |
180.0 |
| H1 |
C11 |
C10 |
C7 |
161.4 |
172.4 |
| H2 |
C8 |
C7 |
C5 |
182.8 |
180.3 |
| C7 |
C8 |
H2 |
N9 |
180.0 |
179.9 |
| H2 |
C8 |
N9 |
C1' |
357.5 |
359.9 |
| H2 |
C8 |
N9 |
C4 |
178.0 |
179.9 |
| H3 |
N6 |
C6 |
N1 |
360.0 |
180.1 |
| H4 |
N6 |
C6 |
N1 |
120.0 |
0.0 |
| N9 |
C1' |
H6 |
O4' |
236.3 |
237.8 |
| H7 |
C4' |
C5' |
O5' |
318.4 |
304.1 |
| H7 |
C4' |
C5' |
H8 |
77.5 |
64.1 |
| H7 |
C4' |
C5' |
H9 |
199.3 |
184.2 |
| C4' |
C5' |
H8 |
O5' |
245.2 |
240.0 |
| H8 |
C5' |
C4' |
H7 |
77.5 |
64.1 |
| C4' |
C5' |
H8 |
H9 |
122.6 |
120.0 |
| O5' |
C5' |
H8 |
H9 |
237.4 |
240.0 |
| H8 |
C5' |
O5' |
H10 |
60.9 |
60.0 |
| C4' |
C5' |
H9 |
O5' |
114.8 |
120.0 |
| H9 |
C5' |
C4' |
H7 |
199.3 |
184.2 |
| C4' |
C5' |
H9 |
H8 |
237.4 |
239.9 |
| O5' |
C5' |
H9 |
H8 |
122.6 |
120.0 |
| H9 |
C5' |
O5' |
H10 |
299.1 |
300.0 |
| H10 |
O5' |
C5' |
H8 |
60.9 |
60.0 |
| H10 |
O5' |
C5' |
H9 |
299.1 |
300.0 |
| H11 |
C3' |
O3' |
H12 |
55.6 |
61.2 |
| H11 |
C3' |
C4' |
H7 |
224.5 |
213.7 |
| H12 |
O3' |
C3' |
H11 |
55.6 |
61.2 |
| H13 |
C2' |
C3' |
H11 |
348.1 |
359.9 |
| H13 |
C2' |
C1' |
H6 |
157.4 |
146.5 |
| H14 |
O2' |
C2' |
H13 |
303.6 |
61.2 |