PDB Chemical Component HNJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HNJ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C4	1.525	1.540
C1	C2	1.526	1.546
C4	N1	1.470	1.478
C2	C3	1.527	1.550
N1	C3	1.473	1.486
N1	C5	1.408	1.398
C6	C5	1.391	1.387
C6	C7	1.394	1.383
C5	C10	1.401	1.395
C7	C8	1.423	1.382
C10	N2	1.406	1.400
C10	C9	1.400	1.387
C8	C9	1.382	1.382
N2	C11	1.406	1.379
C16	C15	1.386	1.377
C16	C17	1.384	1.403
C15	C14	1.402	1.383
C11	C17	1.487	1.471
C11	N3	1.318	1.295
C17	C12	1.385	1.401
N3	S1	1.706	1.672
C14	C13	1.402	1.387
C12	C13	1.377	1.366
C12	S1	1.771	1.770
S1	O2	1.470	1.421
S1	O1	1.462	1.421
C1	H1	1.100	1.090
C2	H2	1.100	1.090
C3	H3	1.100	1.090
C4	H4	1.100	1.090
C6	H5	1.080	1.080
C7	H6	1.080	1.080
C8	H7	1.080	1.080
C9	H8	1.080	1.079
N2	H9	1.000	0.970
C13	H10	1.080	1.080
C14	H11	1.080	1.080
C15	H12	1.080	1.080
C16	H13	1.080	1.080
C1	H14	1.100	1.089
C2	H15	1.100	1.089
C3	H16	1.100	1.090
C4	H17	1.100	1.090

Bond Angles for HNJ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C4	108.5	105.1
C1	C4	N1	104.7	107.1
C4	C1	H1	109.7	110.4
C1	C4	H4	110.7	109.9
C4	C1	H14	109.7	110.3
C1	C4	H17	110.6	109.9
C1	C2	C3	106.6	102.9
C2	C1	H1	109.7	110.3
C1	C2	H2	110.2	110.7
C2	C1	H14	109.7	110.3
C1	C2	H15	110.2	110.7
C4	N1	C5	123.4	111.0
N1	C4	H4	110.6	109.9
N1	C4	H17	110.6	109.9
C3	C2	H2	110.2	110.7
C2	C3	H3	110.3	110.7
C3	C2	H15	110.2	110.7
C2	C3	H16	110.3	110.6
N1	C3	H3	110.3	110.7
N1	C3	H16	110.3	110.8
N1	C5	C10	121.1	120.1
C6	C5	C10	118.3	119.8
C6	C7	C8	120.7	120.2
C7	C6	H5	119.8	120.0
C6	C7	H6	119.6	119.9
C5	C10	N2	121.5	120.1
C5	C10	C9	122.1	119.8
C7	C8	C9	118.9	120.2
C8	C7	H6	119.7	119.9
C7	C8	H7	120.6	119.9
C10	N2	C11	124.4	120.0
C10	N2	H9	117.8	120.0
C10	C9	H8	120.3	120.0
C9	C8	H7	120.5	119.9
C8	C9	H8	120.3	120.0
N2	C11	C17	117.3	120.5
N2	C11	N3	125.1	120.5
C11	N2	H9	117.8	120.0
C16	C15	H12	119.9	119.5
C11	C17	C16	129.5	130.5
C17	C16	H13	120.7	119.8
C15	C14	H11	119.3	120.3
C17	C11	N3	117.5	119.1
C11	C17	C12	109.9	112.0
C11	N3	S1	108.4	106.2
C17	C12	S1	108.2	103.2
C12	S1	N3	95.5	99.6
C14	C13	H10	121.6	120.2
C13	C12	S1	129.1	134.8
C12	C13	H10	121.7	120.1
H1	C1	H14	109.5	110.3
H2	C2	H15	109.5	110.8
H3	C3	H16	109.5	110.6
H4	C4	H17	109.5	110.1

Torsion Angles for HNJ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	C1	C2	C3	352.4	338.1
C2	C1	C4	H1	240.2	118.9
C4	C1	C2	H2	111.9	96.4
C2	C1	C4	H14	119.8	241.1
C4	C1	C2	H15	232.8	219.7
C1	C4	N1	C5	168.6	145.8
N1	C4	C1	H4	240.7	240.6
N1	C4	C1	H17	119.2	119.4
H1	C1	C4	H14	239.7	122.2
H4	C4	C1	H17	238.5	238.7
C2	C1	C4	N1	10.2	358.8
C4	C1	C2	H1	119.8	241.0
C2	C1	C4	H4	129.4	118.1
C4	C1	C2	H14	240.2	118.9
C2	C1	C4	H17	251.0	239.4
C3	C2	C1	H2	240.5	241.7
C1	C2	C3	H3	121.4	155.9
C3	C2	C1	H15	119.5	118.4
C1	C2	C3	H16	242.5	278.8
H1	C1	C2	H14	120.3	237.9
H2	C2	C1	H15	239.1	236.7
N1	C4	C1	H1	130.0	239.9
C1	C4	N1	H4	119.3	119.4
N1	C4	C1	H14	250.3	117.7
C1	C4	N1	H17	240.8	240.7
C4	N1	C3	H3	245.3	202.4
C4	N1	C3	H16	124.1	79.3
C4	N1	C5	C10	130.2	63.6
H4	C4	N1	H17	121.5	121.3
C3	C2	C1	C4	352.4	338.1
C3	C2	C1	H1	232.6	97.0
C1	C2	C3	H2	119.6	118.3
C3	C2	C1	H14	112.2	219.1
C1	C2	C3	H15	240.4	241.6
N1	C3	C2	H3	240.5	241.5
N1	C3	C2	H16	119.4	118.6
H2	C2	C3	H15	120.9	123.3
H3	C3	C2	H16	238.9	237.1
C1	C4	N1	C3	350.7	25.3
N1	C3	C2	H2	242.4	279.0
C2	C3	N1	H3	119.4	118.5
N1	C3	C2	H15	121.5	155.7
C2	C3	N1	H16	240.6	241.5
H3	C3	N1	H16	121.1	123.1
C5	N1	C4	H4	49.4	26.5
C5	N1	C4	H17	287.9	265.2
C5	N1	C3	H3	67.3	81.8
C5	N1	C3	H16	306.2	318.8
C6	C5	N1	C10	177.8	179.7
N1	C5	C10	N2	355.7	359.7
N1	C5	C10	C9	180.4	179.7
C4	N1	C5	C6	308.0	243.3
N1	C5	C6	C10	182.1	180.3
C6	C5	C10	N2	177.9	180.0
C6	C5	C10	C9	2.6	360.0
C7	C6	C5	C10	1.5	0.0
C6	C7	C8	C9	2.8	0.0
C8	C7	C6	H6	180.0	180.0
C6	C7	C8	H7	182.8	180.0
C5	C10	N2	C11	185.7	200.4
C5	C10	N2	H9	5.7	20.4
C5	C10	C9	H8	176.1	180.0
C8	C7	C6	H5	175.8	180.0
C6	C7	C8	H6	180.0	180.0
C9	C8	C7	H7	180.0	180.0
C7	C8	C9	H8	181.2	180.0
C5	C10	N2	C9	184.4	180.0
N2	C10	C9	H8	0.6	360.0
C10	N2	C11	C17	149.6	187.1
C10	N2	C11	N3	333.1	6.8
C11	N2	C10	H9	180.0	180.0
C5	C10	C9	N2	175.5	180.0
C10	C9	C8	H7	181.2	180.0
C8	C9	C10	H8	180.0	180.0
C5	C10	C9	C8	356.1	360.0
C9	C8	C7	H6	182.8	180.0
C7	C8	C9	H7	180.0	180.0
C10	C9	C8	H8	180.0	180.0
C10	N2	C11	H9	180.0	180.0
N2	C11	C17	C16	354.0	0.0
C17	C11	N2	N3	176.5	180.3
N2	C11	C17	C12	177.3	180.0
N2	C11	N3	S1	183.9	180.0
C11	C17	C16	C15	181.3	180.2
C16	C15	C14	H11	180.0	180.2
C17	C16	C15	H12	181.7	179.9
C16	C17	C11	N3	170.8	180.3
C11	C17	C16	C12	183.6	180.0
C16	C17	C12	S1	184.3	179.9
C15	C14	C13	H10	178.9	180.0
N2	C11	C17	N3	183.2	179.7
C17	C11	N2	H9	329.6	7.1
C11	C17	C16	H13	1.3	360.0
C17	C11	N3	S1	7.4	359.7
C11	C17	C12	S1	1.3	359.9
N2	C11	N3	C17	176.5	180.3
N3	C11	N2	H9	153.1	186.8
N3	C11	C17	C16	170.8	180.3
N3	C11	C17	C12	354.1	0.3
C12	S1	N3	C11	354.6	0.2
C11	C17	C12	C16	177.0	180.0
C12	C17	C11	N3	354.1	0.3
C17	C12	S1	N3	2.2	359.9
C13	C12	C17	S1	176.9	180.0
C17	C12	C13	H10	180.5	180.1
C13	C12	S1	N3	185.5	180.0
C14	C13	C12	S1	176.8	180.0
C12	C13	C14	H10	180.0	180.0
C11	C17	C12	C13	178.3	179.9
C17	C12	C13	S1	183.8	180.1
C14	C13	C12	H10	180.0	180.0
C11	N3	S1	C12	354.6	0.2
S1	C12	C13	H10	356.7	360.0
C2	C1	H1	C4	119.1	244.3
H1	C1	C4	N1	130.0	239.9
H1	C1	C4	H4	249.3	359.2
C4	C1	H1	H14	120.4	237.8
H1	C1	C4	H17	10.8	120.5
H1	C1	C2	C3	232.6	97.0
H1	C1	C2	H2	352.1	215.3
C2	C1	H1	H14	239.5	122.1
H1	C1	C2	H15	113.0	338.6
H2	C2	C1	C4	111.9	96.4
C1	C2	H2	C3	242.6	246.5
H2	C2	C1	H1	352.1	215.3
H2	C2	C1	H14	231.8	337.5
C1	C2	H2	H15	121.3	123.3
H2	C2	C3	H3	1.9	37.5
C3	C2	H2	H15	238.7	236.8
H2	C2	C3	H16	123.0	160.4
H3	C3	C2	H2	1.9	37.5
H3	C3	C2	H15	241.0	274.2
C2	C3	H3	H16	121.6	122.9
N1	C3	H3	H16	238.4	236.8
C1	C4	H4	N1	244.4	242.4
H4	C4	C1	H1	249.3	359.2
H4	C4	C1	H14	9.6	237.1
C1	C4	H4	H17	122.2	121.2
H4	C4	N1	C5	49.4	26.5
N1	C4	H4	H17	237.8	238.8
H5	C6	C5	C10	181.5	180.0
H5	C6	C7	C8	175.8	180.0
H5	C6	C7	H6	355.7	0.1
C6	C7	H6	C8	180.0	180.0
H6	C7	C6	H5	355.7	0.1
H6	C7	C8	C9	182.8	180.0
H6	C7	C8	H7	2.8	360.0
C7	C8	H7	C9	180.0	180.0
H7	C8	C7	H6	2.8	360.0
H7	C8	C9	H8	1.1	360.0
H8	C9	C8	H7	1.1	360.0
C10	N2	H9	C11	180.0	180.0
H9	N2	C11	C17	329.6	7.1
H9	N2	C11	N3	153.1	186.8
H10	C13	C12	S1	356.7	360.0
H11	C14	C13	H10	358.9	359.9
H12	C15	C14	H11	360.0	0.0
H13	C16	C15	H12	1.8	0.2
C2	C1	H14	C4	240.9	115.7
H14	C1	C4	N1	250.3	117.7
C4	C1	H14	H1	239.6	122.2
H14	C1	C4	H4	9.6	237.1
H14	C1	C4	H17	131.1	358.3
H14	C1	C2	C3	112.2	219.1
C2	C1	H14	H1	120.5	237.9
H14	C1	C2	H2	231.8	337.5
H14	C1	C2	H15	352.7	100.8
H15	C2	C1	C4	232.8	219.7
C1	C2	H15	C3	117.4	113.5
H15	C2	C1	H1	113.0	338.6
C1	C2	H15	H2	238.7	236.7
H15	C2	C1	H14	352.7	100.8
C3	C2	H15	H2	121.3	123.2
H15	C2	C3	H3	241.0	274.2
H15	C2	C3	H16	2.1	37.1
H16	C3	C2	H2	123.0	160.4
C2	C3	H16	H3	238.4	237.0
H16	C3	C2	H15	2.1	37.1
N1	C3	H16	H3	121.6	123.1
C1	C4	H17	N1	115.6	117.6
H17	C4	C1	H1	10.8	120.5
C1	C4	H17	H4	237.8	238.8
H17	C4	C1	H14	131.1	358.3
H17	C4	N1	C5	287.9	265.2
N1	C4	H17	H4	122.2	121.2