PDB Chemical Component HN0

Ideal Model

Chemical Description

Name 2'-deoxy-N-[(2S,3S,5R)-5-hydroxy-2-pentyltetrahydrofuran-3-yl]guanosine 5'-(dihydrogen phosphate)
Formula C19 H30 N5 O9 P
Formal charge 0
Molecular weight 503.443 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 64
Chiral atom count 6
Chiral atoms C1 C3 C7 C1' C3' C4'
Observed leaving atoms OP3 H3' HOP3
Bond count 67
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-[(2S,3S,5R)-5-hydroxy-2-pentyltetrahydrofuran-3-yl]guanosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-oxidanyl-5-[6-oxidanylidene-2-[[(2S,3S,5R)-5-oxidanyl-2-pentyl-oxolan-3-yl]amino]-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCCCC[C@@H]1O[C@@H](O)C[C@@H]1NC2=Nc3n(cnc3C(=O)N2)[C@H]4C[C@H](O)[C@@H](CO[P](O)(O)=O)O4
SMILES (CACTVS) CCCCC[CH]1O[CH](O)C[CH]1NC2=Nc3n(cnc3C(=O)N2)[CH]4C[CH](O)[CH](CO[P](O)(O)=O)O4
Stereo SMILES (OpenEye) CCCCC[C@H]1[C@H](C[C@@H](O1)O)NC2=Nc3c(ncn3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O)C(=O)N2
InChI descriptor InChI=1S/C19H30N5O9P/c1-2-3-4-5-12-10(6-15(26)33-12)21-19-22-17-16(18(27)23-19)20-9-24(17)14-7-11(25)13(32-14)8-31-34(28,29)30/h9-15,25-26H,2-8H2,1H3,(H2,28,29,30)(H2,21,22,23,27)/t10-,11-,12-,13+,14+,15+/m0/s1
InChIKey descriptor ITRPVFNWIAAYPZ-PKCACUDHSA-N

Status Information

Last modified 2012-02-20
Created 2011-08-15
Release status REL
Model PDB code 3T5K
Processing site RCSB