PDB Chemical Component HN0

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HN0

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.608 1.610
C C1 1.517 1.541
C C3 1.540 1.548
C H 1.100 1.091
C HA 1.100 1.090
P OP1 1.490 1.480
P O5' 1.599 1.610
P OP2 1.488 1.609
O1 C1 1.405 1.429
C1 O4 1.381 1.438
C1 H1 1.100 1.089
C6 N1 1.427 1.351
N1 C2 1.400 1.362
N1 HN1 1.000 0.970
O1 HO1 0.950 0.967
C2 N2 1.357 1.373
C2 N3 1.366 1.314
N2 C3 1.502 1.465
N2 HN2 1.000 0.970
C3 C7 1.613 1.550
C3 H3 1.100 1.091
C4 N3 1.414 1.338
C5 C4 1.401 1.400
C4 N9 1.389 1.368
O4 C7 1.427 1.444
C6 C5 1.467 1.415
C5 N7 1.416 1.355
O6 C6 1.239 1.220
C7 C9 1.580 1.530
C7 H7 1.100 1.090
N7 C8 1.319 1.301
C8 N9 1.392 1.365
C8 H8 1.080 1.080
C9 C10 1.560 1.530
C9 H9 1.100 1.090
C9 H9A 1.100 1.090
N9 C1' 1.447 1.465
O4' C1' 1.415 1.437
C1' C2' 1.505 1.541
C1' H1' 1.100 1.090
C11 C10 1.558 1.530
C10 H10 1.100 1.090
C10 H10A 1.100 1.090
C11 C12 1.553 1.530
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C13 C12 1.537 1.530
C12 H12 1.100 1.090
C12 H12A 1.100 1.089
C13 H13 1.100 1.090
C13 H13A 1.100 1.090
C13 H13B 1.100 1.090
C2' C3' 1.514 1.547
C2' H2' 1.101 1.090
C2' H2'A 1.100 1.090
C4' C3' 1.529 1.550
C3' O3' 1.430 1.430
C3' H3' 1.101 1.090
O3' HO3' 0.950 0.966
O4' C4' 1.453 1.444
C5' C4' 1.510 1.530
C4' H4' 1.100 1.090
C5' O5' 1.444 1.429
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
OP3 HOP3 0.950 0.966
OP2 HOP2 0.950 0.966

Bond Angles for HN0

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP3 P OP1 108.2 109.5
OP3 P O5' 102.6 109.5
OP3 P OP2 108.3 109.5
P OP3 HOP3 109.5 114.0
C1 C C3 102.1 104.2
C1 C H 111.3 110.5
C1 C HA 111.3 110.5
C C1 O4 108.0 107.3
C C1 H1 109.0 109.9
C3 C H 111.3 110.5
C3 C HA 111.3 110.5
C C3 N2 110.2 110.9
C C3 C7 102.6 102.1
C C3 H3 107.9 110.9
H C HA 109.5 110.6
O5' P OP1 108.3 109.4
OP1 P OP2 119.4 109.5
O5' P OP2 108.7 109.5
P O5' C5' 118.6 123.0
P OP2 HOP2 109.5 114.1
O1 C1 O4 103.9 109.9
O1 C1 H1 110.6 110.0
O4 C1 H1 111.0 109.9
C1 O4 C7 105.9 107.0
C6 N1 HN1 117.6 119.9
C2 N1 HN1 117.6 119.8
N1 C2 N2 116.2 119.0
N1 C2 N3 121.4 121.9
N2 C2 N3 122.4 119.0
C2 N2 C3 128.9 120.0
C2 N2 HN2 115.6 120.0
C3 N2 HN2 115.5 120.0
N2 C3 C7 119.9 110.9
N2 C3 H3 108.5 110.8
C7 C3 H3 107.1 110.9
C3 C7 O4 105.4 103.5
C3 C7 C9 120.6 110.6
C3 C7 H7 107.7 110.6
C5 C4 N9 106.0 106.1
C4 N9 C8 105.4 107.5
C4 N9 C1' 124.6 126.3
O4 C7 C9 104.7 110.6
O4 C7 H7 110.1 110.6
C6 C5 N7 132.5 134.1
C5 N7 C8 103.1 109.3
C9 C7 H7 108.0 110.7
C7 C9 C10 118.1 109.5
C7 C9 H9 107.3 109.5
C7 C9 H9A 107.3 109.4
N7 C8 N9 114.8 109.8
N7 C8 H8 122.6 125.2
N9 C8 H8 122.6 125.1
C8 N9 C1' 130.1 126.2
C10 C9 H9 107.3 109.5
C10 C9 H9A 107.3 109.4
C9 C10 H10 108.9 109.5
C9 C10 H10A 108.9 109.5
H9 C9 H9A 109.5 109.5
N9 C1' C2' 116.6 109.9
N9 C1' H1' 108.7 109.9
O4' C1' H1' 109.1 110.0
C2' C1' H1' 107.9 109.8
C1' C2' C3' 96.0 104.2
C1' C2' H2' 112.7 110.5
C1' C2' H2'A 112.7 110.5
C11 C10 H10 108.9 109.5
C11 C10 H10A 108.9 109.4
H10 C10 H10A 109.4 109.4
C12 C11 H11 108.2 109.5
C12 C11 H11A 108.2 109.5
C11 C12 H12 108.2 109.5
C11 C12 H12A 108.2 109.5
H11 C11 H11A 109.5 109.5
C13 C12 H12 108.2 109.4
C13 C12 H12A 108.2 109.4
H12 C12 H12A 109.5 109.5
H13 C13 H13A 109.5 109.5
H13 C13 H13B 109.5 109.5
H13A C13 H13B 109.5 109.4
C3' C2' H2' 112.7 110.5
C3' C2' H2'A 112.7 110.5
C2' C3' O3' 105.6 110.9
C2' C3' H3' 111.9 111.0
H2' C2' H2'A 109.5 110.5
C4' C3' H3' 111.6 110.9
O3' C3' H3' 113.2 110.7
C3' O3' HO3' 109.5 114.0
O4' C4' H4' 109.9 110.6
C5' C4' H4' 109.1 110.5
O5' C5' H5' 108.8 109.5
O5' C5' H5'A 108.8 109.5
H5' C5' H5'A 109.5 109.5

Torsion Angles for HN0

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5' P OP3 OP1 114.4 240.1
OP1 P OP3 OP2 130.8 240.0
O5' P OP3 OP2 245.2 120.0
OP3 P O5' C5' 295.3 65.0
OP3 P OP2 HOP2 124.4 300.0
C3 C C1 H 241.2 241.4
C3 C C1 HA 118.8 118.7
C1 C C3 N2 115.5 97.3
C1 C C3 C7 346.7 339.1
C1 C C3 H3 233.8 220.9
H C C1 HA 237.6 237.3
O1 C1 C O4 115.0 119.4
O1 C1 C H1 235.7 238.8
O4 C1 C H1 120.7 119.4
C C1 O4 C7 317.6 26.5
C1 C C3 H 118.8 118.6
C1 C C3 HA 241.2 241.3
C3 C C1 O4 34.3 358.0
C3 C C1 H1 273.6 238.6
H C C3 HA 122.4 122.7
C2 N2 C3 C 125.4 86.5
C C3 N2 HN2 305.4 266.4
N2 C3 C C7 128.8 118.2
N2 C3 C H3 241.7 236.4
C7 C3 C H3 113.0 118.2
C C3 C7 O4 350.3 37.1
C C3 C7 C9 108.3 155.5
C C3 C7 H7 232.8 278.6
C1 C H C3 246.8 245.3
C1 C H HA 123.4 122.7
H C C1 O4 153.1 116.6
H C C1 H1 32.5 357.2
C3 C H HA 236.6 237.4
H C C3 N2 356.7 338.7
H C C3 C7 227.9 220.4
H C C3 H3 115.0 102.3
C1 C HA C3 113.2 114.8
C1 C HA H 236.6 237.4
HA C C1 O4 275.5 239.4
HA C C1 H1 154.8 119.9
C3 C HA H 123.4 122.6
HA C C3 N2 234.3 216.0
HA C C3 C7 105.5 97.8
HA C C3 H3 352.6 339.6
OP3 P OP1 O5' 110.6 240.0
OP3 P OP1 OP2 235.6 120.0
OP1 P OP3 HOP3 0.0 179.9
O5' P OP1 OP2 125.0 240.0
OP1 P O5' C5' 49.6 305.0
OP1 P OP2 HOP2 0.0 60.1
OP3 P O5' OP1 245.7 120.0
OP3 P O5' OP2 114.6 240.0
O5' P OP3 HOP3 114.4 60.0
OP1 P O5' OP2 228.9 120.0
O5' P OP2 HOP2 235.2 180.0
P O5' C5' H5' 70.3 60.1
P O5' C5' H5'A 311.1 300.0
OP3 P OP2 OP1 124.4 240.0
OP3 P OP2 O5' 249.2 120.0
OP2 P OP3 HOP3 229.3 300.0
O5' P OP2 OP1 235.2 119.9
OP2 P O5' C5' 180.7 185.0
O1 C1 C C3 149.3 117.4
O1 C1 C H 268.2 236.0
O1 C1 C HA 30.5 358.7
C C1 O1 O4 242.6 242.2
C C1 O1 H1 123.4 121.1
O4 C1 O1 H1 240.8 238.9
O1 C1 O4 C7 195.9 267.1
O4 C1 C C3 34.3 358.0
O4 C1 C H 153.1 116.6
O4 C1 C HA 275.5 239.4
C C1 O4 H1 240.6 240.5
O1 C1 O4 H1 118.9 121.1
C3 C7 O4 C1 31.6 320.0
C1 O4 C7 C9 263.3 201.5
C1 O4 C7 H7 147.4 78.4
H1 C1 C C3 273.6 238.6
H1 C1 C H 32.5 357.2
H1 C1 C HA 154.8 119.9
C C1 H1 O4 118.8 117.8
O1 C1 H1 O4 245.2 238.9
H1 C1 O4 C7 77.0 145.9
C2 N1 C6 HN1 180.0 179.8
C6 N1 C2 HN1 180.0 180.2
N2 C2 N1 N3 180.1 180.0
N1 C2 N2 C3 180.5 180.0
N1 C2 N2 HN2 0.5 0.0
HN1 N1 C2 N2 359.9 0.0
HN1 N1 C2 N3 179.8 180.0
HO1 O1 C1 O4 297.4 297.8
HO1 O1 C1 H1 56.6 58.9
C C3 N2 C2 125.4 86.5
N2 C2 N1 HN1 359.9 0.0
N1 C2 N2 N3 179.9 180.0
C3 N2 C2 HN2 180.0 180.0
C2 N2 C3 C7 244.1 199.2
C2 N2 C3 H3 7.5 322.8
N3 C2 N1 HN1 179.8 180.0
N1 C2 N3 N2 180.1 180.0
N3 C2 N2 C3 0.6 360.0
N3 C2 N2 HN2 180.6 180.0
N2 C3 C H 356.7 338.7
N2 C3 C HA 234.3 216.0
C C3 N2 C7 241.3 247.2
C C3 N2 H3 117.9 123.6
C3 N2 C2 N3 0.6 360.0
C2 N2 C3 HN2 180.0 180.0
C7 C3 N2 H3 236.6 236.4
N2 C3 C7 O4 227.9 278.8
N2 C3 C7 C9 345.9 37.3
N2 C3 C7 H7 110.4 160.3
HN2 N2 C2 N3 180.6 180.0
C2 N2 HN2 C3 180.0 180.0
HN2 N2 C3 C7 64.1 19.2
HN2 N2 C3 H3 187.5 142.8
C7 C3 C H 227.9 220.4
C7 C3 C HA 105.5 97.8
C C3 C7 N2 122.4 118.2
C C3 C7 H3 246.4 241.8
C1 O4 C7 C3 31.6 320.0
C7 C3 N2 HN2 64.1 19.2
N2 C3 C7 H3 124.0 123.6
O4 C7 C3 C9 242.0 241.5
O4 C7 C3 H7 117.5 118.5
C9 C7 C3 H7 235.5 237.0
C3 C7 C9 C10 190.0 175.0
C3 C7 C9 H9 311.2 295.0
C3 C7 C9 H9A 68.7 55.1
H3 C3 C H 115.0 102.3
H3 C3 C HA 352.6 339.6
C C3 H3 N2 240.7 236.3
C C3 H3 C7 109.9 112.7
H3 C3 N2 HN2 187.5 142.8
N2 C3 H3 C7 229.2 236.4
H3 C3 C7 O4 103.8 155.2
H3 C3 C7 C9 221.9 273.7
H3 C3 C7 H7 346.4 36.8
C5 C4 N9 C8 0.7 360.0
C5 C4 N9 C1' 181.5 180.0
N7 C8 N9 C4 359.7 0.0
C4 N9 C8 H8 179.8 180.0
C8 N9 C4 C1' 179.1 180.0
C4 N9 C1' C2' 162.4 85.0
C4 N9 C1' H1' 40.2 324.0
C7 O4 C1 H1 77.0 145.9
O4 C7 C3 H3 103.8 155.2
C3 C7 O4 C9 128.3 118.5
C3 C7 O4 H7 244.2 241.5
C9 C7 O4 H7 115.9 123.0
O4 C7 C9 C10 308.3 289.0
O4 C7 C9 H9 69.6 49.0
O4 C7 C9 H9A 187.1 169.1
C5 C6 N1 HN1 180.3 179.7
C6 C5 C4 N9 179.4 179.7
C6 C5 N7 C8 180.4 180.3
N7 C5 C4 N9 359.2 0.0
C5 N7 C8 N9 359.8 360.0
C5 N7 C8 H8 179.7 180.0
O6 C6 N1 HN1 359.7 0.2
O6 C6 C5 N7 0.6 359.6
C9 C7 C3 H3 221.9 273.7
C3 C7 C9 O4 241.6 246.0
C3 C7 C9 H7 124.3 123.0
O4 C7 C9 H7 242.7 237.0
C10 C9 C7 H9 238.8 240.0
C10 C9 C7 H9A 121.2 119.9
C7 C9 C10 H10 299.9 300.1
C7 C9 C10 H10A 59.1 60.0
H9 C9 C7 H9A 242.5 239.9
H7 C7 C3 H3 346.4 36.8
C3 C7 H7 O4 114.4 114.0
C3 C7 H7 C9 228.2 237.0
O4 C7 H7 C9 113.8 123.0
H7 C7 C9 C10 65.6 52.0
H7 C7 C9 H9 186.9 172.0
H7 C7 C9 H9A 304.4 292.1
C4 N9 C8 N7 359.7 0.0
N9 C8 N7 H8 180.0 180.0
N7 C8 N9 C1' 178.8 180.0
C4 N9 C8 C1' 180.9 180.0
N7 C8 N9 H8 180.0 180.0
C8 N9 C1' C2' 343.5 265.0
C8 N9 C1' H1' 221.3 144.1
N7 C8 H8 N9 180.0 180.0
H8 C8 N9 C1' 358.8 360.0
C10 C9 C7 H7 65.6 52.0
C7 C9 C10 H9 121.2 120.0
C7 C9 C10 H9A 238.8 240.1
H9 C9 C10 H9A 117.5 120.1
C11 C10 C9 H10 239.6 239.9
C11 C10 C9 H10A 120.4 120.0
H10 C10 C9 H10A 240.8 240.1
H9 C9 C7 H7 186.9 172.0
C7 C9 H9 C10 232.2 240.0
C7 C9 H9 H9A 116.1 120.0
C10 C9 H9 H9A 243.9 240.0
H9 C9 C10 H10 178.6 180.1
H9 C9 C10 H10A 297.9 300.0
H9A C9 C7 H7 304.4 292.1
C7 C9 H9A C10 127.8 119.9
C7 C9 H9A H9 243.9 240.0
C10 C9 H9A H9 116.1 120.0
H9A C9 C10 H10 61.1 60.0
H9A C9 C10 H10A 180.4 180.0
C4 N9 C1' C8 178.9 180.0
C1' N9 C8 H8 358.8 360.0
O4' C1' N9 H1' 240.7 238.8
C2' C1' N9 H1' 122.2 121.0
N9 C1' C2' C3' 171.6 121.5
N9 C1' C2' H2' 289.4 240.2
N9 C1' C2' H2'A 53.9 2.8
N9 C1' O4' H1' 119.0 121.1
C2' C1' O4' H1' 244.8 240.5
O4' C1' C2' H2' 168.0 120.7
O4' C1' C2' H2'A 292.5 243.3
N9 C1' C2' H1' 237.4 239.0
O4' C1' C2' H1' 116.1 119.6
C3' C2' C1' H2' 242.3 241.3
C3' C2' C1' H2'A 117.8 118.7
C1' C2' C3' O3' 71.9 139.1
C1' C2' C3' H3' 195.4 262.6
H2' C2' C1' H2'A 235.5 237.4
N9 C1' H1' C2' 127.3 121.0
H1' C1' C2' C3' 294.2 242.4
H1' C1' C2' H2' 51.9 1.1
H1' C1' C2' H2'A 176.5 123.8
C11 C10 C9 H9 58.3 60.0
C11 C10 C9 H9A 300.8 299.9
C9 C10 C11 H10 120.4 120.1
C9 C10 C11 H10A 239.6 240.0
H10 C10 C11 H10A 119.2 119.9
H10 C10 C9 H9 178.6 180.1
H10 C10 C9 H9A 61.1 60.0
C9 C10 H10 H10A 118.9 120.0
C11 C10 H10 H10A 241.1 240.1
H10A C10 C9 H9 297.9 300.0
H10A C10 C9 H9A 180.4 180.0
C9 C10 H10A H10 241.1 240.0
C11 C10 H10A H10 118.9 120.0
C12 C11 C10 H10 59.4 59.9
C12 C11 C10 H10A 300.2 300.0
H11 C11 C12 H11A 118.5 120.1
C13 C12 C11 H12 239.2 240.1
C13 C12 C11 H12A 120.8 120.0
H12 C12 C11 H12A 241.5 239.9
H11 C11 C10 H10 180.2 179.9
H11 C11 C10 H10A 60.9 60.0
C12 C11 H11 H11A 242.3 240.0
H11 C11 C12 H12 112.0 180.0
H11 C11 C12 H12A 230.5 300.1
H11A C11 C10 H10 298.7 300.0
H11A C11 C10 H10A 179.5 180.0
C12 C11 H11A H11 117.7 120.0
H11A C11 C12 H12 353.5 59.9
H11A C11 C12 H12A 112.0 180.0
C13 C12 C11 H11 351.3 60.1
C13 C12 C11 H11A 232.8 300.0
C11 C12 C13 H12 120.7 120.0
C11 C12 C13 H12A 239.2 240.0
H12 C12 C13 H12A 118.5 120.0
H12 C12 C11 H11 112.0 180.0
H12 C12 C11 H11A 353.5 59.9
C11 C12 H12 H12A 117.7 120.1
C13 C12 H12 H12A 242.3 240.0
H12A C12 C11 H11 230.5 300.1
H12A C12 C11 H11A 112.0 180.0
C11 C12 H12A H12 242.4 239.9
C13 C12 H12A H12 117.7 120.0
H13 C13 C12 H12 59.3 180.0
H13 C13 C12 H12A 300.8 60.0
H13A C13 H13 H13B 120.0 120.0
H13A C13 C12 H12 179.3 300.0
H13A C13 C12 H12A 60.8 180.0
H13 C13 H13A H13B 240.0 240.0
H13B C13 C12 H12 299.3 60.0
H13B C13 C12 H12A 180.8 300.0
H13 C13 H13B H13A 120.0 120.0
C3' C2' C1' H1' 294.2 242.4
C1' C2' C3' H2' 117.7 118.7
C1' C2' C3' H2'A 242.3 241.3
H2' C2' C3' H2'A 124.6 122.7
C4' C3' C2' H3' 119.3 118.3
O3' C3' C2' H3' 236.5 236.5
C2' C3' O3' HO3' 180.0 61.4
H2' C2' C1' H1' 51.9 1.1
C1' C2' H2' C3' 252.6 245.2
C1' C2' H2' H2'A 126.3 122.6
C3' C2' H2' H2'A 233.7 237.4
H2' C2' C3' O3' 314.2 20.4
H2' C2' C3' H3' 77.7 143.9
H2'A C2' C1' H1' 176.5 123.8
C1' C2' H2'A C3' 107.4 114.7
C1' C2' H2'A H2' 233.7 237.4
C3' C2' H2'A H2' 126.3 122.6
H2'A C2' C3' O3' 189.6 257.8
H2'A C2' C3' H3' 313.2 21.3
C4' C3' C2' H2' 197.0 262.2
C4' C3' C2' H2'A 72.4 139.6
C2' C3' C4' H3' 240.6 241.7
O3' C3' C4' H3' 128.2 123.5
C4' C3' O3' HO3' 290.0 174.2
O3' C3' C2' H2' 314.2 20.4
O3' C3' C2' H2'A 189.6 257.8
C2' C3' O3' H3' 122.7 123.7
C4' C3' O3' H3' 232.7 236.4
H3' C3' C2' H2' 77.7 143.9
H3' C3' C2' H2'A 313.2 21.3
C2' C3' H3' O3' 240.8 236.4
H3' C3' O3' HO3' 57.3 297.8
HO3' O3' C3' H3' 57.3 297.8
C4' O4' C1' H1' 80.1 93.0
O4' C4' C3' H3' 146.4 81.3
C5' C4' O4' H4' 240.0 237.0
P O5' C5' C4' 190.7 180.0
C5' C4' C3' H3' 26.2 322.6
O4' C4' C5' H4' 120.5 123.0
H4' C4' C3' H3' 263.9 199.8
C5' O5' P OP1 49.6 305.0
C5' O5' P OP2 180.7 185.0
O5' C5' C4' H4' 132.4 307.8
H5' C5' O5' H5'A 119.2 120.1
H5' C5' C4' H4' 252.8 67.8
O5' C5' H5' H5'A 241.3 240.0
H5'A C5' C4' H4' 12.0 187.8
O5' C5' H5'A H5' 118.7 120.0
HOP3 OP3 P OP1 0.0 179.9
HOP3 OP3 P O5' 114.4 60.0
HOP3 OP3 P OP2 229.3 300.0