PDB Chemical Component HMY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HMY

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O23	C7	1.227	1.211
C7	O8	1.464	1.339
C7	C2	1.508	1.476
O8	C9	1.424	1.440
C9	C25	1.525	1.528
C9	C10	1.527	1.530
C10	C11	1.529	1.496
C11	C12	1.529	1.316
C12	C13	1.515	1.444
C2	C1	1.396	1.406
C2	C3	1.399	1.393
C1	O20	1.355	1.356
C1	C6	1.391	1.386
C6	C5	1.390	1.387
C5	O21	1.369	1.356
C5	C4	1.396	1.389
O21	C22	1.436	1.429
C4	C3	1.393	1.371
C3	C18	1.489	1.512
C18	O31	1.431	1.440
C18	C17	1.532	1.516
O31	C17	1.425	1.440
C17	C16	1.533	1.527
C16	C15	1.526	1.520
C15	O29	1.445	1.428
C15	C14	1.538	1.531
C14	O28	1.434	1.430
C14	C13	1.513	1.498
C13	O24	1.220	1.228
C9	H9	1.100	1.103
C25	H25	1.100	1.090
C25	H25A	1.100	1.089
C25	H25B	1.100	1.090
C10	H10	1.100	1.079
C10	H10A	1.099	1.104
C11	H11	1.080	1.104
C12	H12	1.080	1.112
O20	HO20	0.950	0.967
C6	H6	1.081	1.079
C22	H22	1.100	1.090
C22	H22A	1.100	1.091
C22	H22B	1.100	1.089
C4	H4	1.080	1.080
C18	H18	1.100	1.088
C17	H17	1.100	1.095
C16	H16	1.100	1.097
C16	H16A	1.100	1.095
C15	H15	1.100	1.099
O29	HO29	0.950	0.967
C14	H14	1.100	1.082
O28	HO28	0.950	0.967

Bond Angles for HMY

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O23	C7	O8	121.4	122.0
O23	C7	C2	120.1	118.6
O8	C7	C2	118.6	119.4
C7	O8	C9	117.6	122.2
C7	C2	C1	118.8	119.2
C7	C2	C3	121.4	121.1
O8	C9	C25	107.9	111.4
O8	C9	C10	109.3	110.6
O8	C9	H9	110.6	108.4
C25	C9	C10	109.6	110.8
C25	C9	H9	110.4	107.8
C9	C25	H25	109.5	109.5
C9	C25	H25A	109.4	109.5
C9	C25	H25B	109.5	109.4
C9	C10	C11	115.2	110.6
C10	C9	H9	108.9	107.8
C9	C10	H10	107.6	110.8
C9	C10	H10A	106.3	107.6
C10	C11	C12	111.4	127.4
C11	C10	H10	107.6	112.3
C11	C10	H10A	106.3	108.1
C10	C11	H11	124.3	116.6
C11	C12	C13	114.2	130.6
C12	C11	H11	124.3	116.0
C11	C12	H12	122.9	114.2
C12	C13	C14	120.8	126.5
C12	C13	O24	118.7	116.8
C13	C12	H12	122.9	115.1
C1	C2	C3	119.9	119.7
C2	C1	O20	119.7	120.7
C2	C1	C6	121.3	119.9
C2	C3	C4	118.6	119.8
C2	C3	C18	122.0	122.7
O20	C1	C6	119.0	119.4
C1	O20	HO20	109.5	114.0
C1	C6	C5	118.9	119.7
C1	C6	H6	120.5	120.1
C6	C5	O21	120.1	119.8
C6	C5	C4	120.1	120.1
C5	C6	H6	120.6	120.2
O21	C5	C4	119.7	120.1
C5	O21	C22	118.8	117.0
C5	C4	C3	121.2	120.8
C5	C4	H4	119.4	119.8
O21	C22	H22	109.5	109.5
O21	C22	H22A	109.5	109.4
O21	C22	H22B	109.5	109.5
C4	C3	C18	119.3	117.5
C3	C4	H4	119.4	119.4
C3	C18	O31	117.7	113.1
C3	C18	C17	126.8	120.3
C3	C18	H18	87.4	115.6
O31	C18	C17	57.4	58.3
C18	O31	C17	64.9	63.5
O31	C18	H18	140.3	116.8
C18	C17	O31	57.7	58.2
C18	C17	C16	120.2	122.1
C17	C18	H18	132.3	119.6
C18	C17	H17	134.9	118.2
O31	C17	C16	117.8	113.6
O31	C17	H17	137.0	116.3
C17	C16	C15	109.9	112.9
C16	C17	H17	91.2	115.3
C17	C16	H16	109.3	108.6
C17	C16	H16A	109.2	109.0
C16	C15	O29	107.8	110.6
C16	C15	C14	115.1	111.1
C15	C16	H16	109.3	109.1
C15	C16	H16A	109.2	109.5
C16	C15	H15	106.8	108.8
O29	C15	C14	109.7	109.9
O29	C15	H15	112.6	108.1
C15	O29	HO29	109.5	114.0
C15	C14	O28	108.9	109.3
C15	C14	C13	115.6	109.2
C14	C15	H15	104.8	108.2
C15	C14	H14	105.8	108.7
O28	C14	C13	110.2	109.1
O28	C14	H14	111.7	109.7
C14	O28	HO28	109.5	114.0
C14	C13	O24	120.4	116.6
C13	C14	H14	104.5	110.8
H25	C25	H25A	109.5	109.5
H25	C25	H25B	109.4	109.4
H25A	C25	H25B	109.5	109.5
H10	C10	H10A	114.0	107.2
H22	C22	H22A	109.5	109.5
H22	C22	H22B	109.4	109.5
H22A	C22	H22B	109.5	109.4
H16	C16	H16A	109.9	107.5

Torsion Angles for HMY

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O8	C7	O23	C2	178.5	180.8
O23	C7	O8	C9	8.5	6.7
O23	C7	C2	C1	7.0	168.5
O23	C7	C2	C3	185.9	347.9
O23	C7	O8	C2	181.5	179.2
O8	C7	C2	C1	188.4	347.8
O8	C7	C2	C3	7.3	167.2
C7	O8	C9	C25	79.0	302.6
C7	O8	C9	C10	198.1	66.2
C7	O8	C9	H9	318.1	184.1
O23	C7	C2	O8	178.5	180.7
C2	C7	O8	C9	187.0	187.5
C1	C2	C7	C3	181.1	180.6
C7	C2	C1	O20	359.6	0.7
C7	C2	C1	C6	179.3	180.9
C7	C2	C3	C4	179.8	178.8
C7	C2	C3	C18	2.3	358.3
C9	O8	C7	C2	187.0	187.5
C25	C9	O8	C10	240.8	236.4
C25	C9	O8	H9	120.8	118.5
O8	C9	C25	H25	236.2	59.9
O8	C9	C25	H25A	356.2	180.0
O8	C9	C25	H25B	116.3	300.0
O8	C9	C10	C11	66.3	213.4
C10	C9	O8	H9	240.0	242.1
O8	C9	C10	H10	186.4	338.6
O8	C9	C10	H10A	308.9	95.6
O8	C9	C25	C10	119.0	123.5
O8	C9	C25	H9	239.0	241.2
C25	C9	C10	C11	184.4	337.4
C10	C9	C25	H9	120.0	117.7
C25	C9	C10	H10	304.4	102.6
C25	C9	C10	H10A	67.0	219.5
H25	C25	C9	H25A	240.0	239.9
H25	C25	C9	H25B	119.9	119.9
H25A	C25	C9	H25B	240.0	240.0
O8	C9	C10	C25	241.9	236.0
O8	C9	C10	H9	121.0	118.3
C25	C9	C10	H9	239.1	242.3
C10	C9	C25	H25	117.3	296.4
C10	C9	C25	H25A	237.3	56.5
C10	C9	C25	H25B	357.3	176.5
C9	C10	C11	C12	195.3	121.6
C11	C10	C9	H10	240.0	234.8
C11	C10	C9	H10A	117.4	117.9
C9	C10	C11	H11	15.3	300.7
H10	C10	C9	H10A	237.5	243.1
C11	C10	C9	H9	305.3	95.2
C9	C10	C11	H10	120.0	124.4
C9	C10	C11	H10A	242.6	242.4
C10	C11	C12	C13	62.3	359.2
C12	C11	C10	H11	180.0	180.9
C10	C11	C12	H12	242.3	179.1
H10	C10	C11	H10A	122.6	118.0
C12	C11	C10	H10	75.3	357.2
C12	C11	C10	H10A	312.7	239.2
C10	C11	C12	H11	180.0	179.1
C11	C12	C13	C14	93.6	345.8
C11	C12	C13	O24	270.6	165.8
C13	C12	C11	H12	180.0	180.0
C13	C12	C11	H11	242.3	180.1
C11	C12	C13	H12	180.0	180.0
C15	C14	C13	C12	261.3	230.2
O28	C14	C13	C12	137.3	110.8
C14	C13	C12	O24	183.0	180.0
C12	C13	C14	H14	17.1	349.9
C7	C2	C1	C3	178.9	179.4
C1	C2	C3	C4	358.7	358.2
C1	C2	C3	C18	181.2	177.7
O20	C1	C2	C6	180.2	179.8
C2	C1	O20	HO20	104.7	90.0
C2	C1	C6	C5	0.4	359.7
C2	C1	C6	H6	180.4	179.7
C7	C2	C3	C1	181.1	180.6
C3	C2	C1	O20	180.7	181.3
C3	C2	C1	C6	0.4	1.5
C5	C4	C3	C2	1.4	0.9
C4	C3	C2	C18	177.6	180.5
C2	C3	C4	H4	181.4	181.2
C2	C3	C18	O31	143.2	208.0
C2	C3	C18	C17	211.6	273.6
C2	C3	C18	H18	355.4	69.6
O20	C1	C2	C3	180.7	181.3
C2	C1	O20	C6	179.8	180.2
O20	C1	C6	C5	180.2	179.9
O20	C1	C6	H6	0.2	359.9
C6	C1	C2	C3	0.4	1.5
C2	C1	C6	O20	180.2	179.8
C6	C1	O20	HO20	284.9	269.8
C1	C6	C5	O21	180.3	179.6
C1	C6	C5	C4	359.7	359.3
C5	C6	C1	H6	180.0	180.0
C1	C6	C5	H6	180.0	180.0
O21	C5	C6	C4	180.6	180.2
C6	C5	O21	C22	124.9	0.0
C6	C5	C4	C3	359.5	0.3
C6	C5	C4	H4	179.4	180.0
C6	C5	O21	C4	179.4	179.8
O21	C5	C6	H6	0.3	359.6
O21	C5	C4	C3	178.8	180.1
O21	C5	C4	H4	358.8	359.8
C5	O21	C22	H22	106.8	180.0
C5	O21	C22	H22A	226.8	300.0
C5	O21	C22	H22B	346.8	59.9
C2	C3	C4	C5	1.4	0.9
C6	C5	C4	O21	180.6	180.2
C4	C5	C6	H6	179.7	179.4
C4	C5	O21	C22	305.5	180.2
C5	C4	C3	C18	179.0	181.4
C3	C4	C5	H4	180.0	180.3
C22	O21	C5	C4	305.5	180.2
H22	C22	O21	H22A	240.0	240.0
H22	C22	O21	H22B	120.0	120.1
H22A	C22	O21	H22B	240.0	240.1
C2	C3	C4	C18	182.4	179.5
C5	C4	C3	H4	180.0	179.7
C4	C3	C18	O31	325.6	27.5
C4	C3	C18	C17	34.0	93.1
C4	C3	C18	H18	177.8	249.2
C2	C3	C18	C4	177.5	180.5
C18	C3	C4	H4	359.0	1.7
O31	C18	C3	C17	291.6	294.4
C3	C18	O31	C17	117.9	112.4
O31	C18	C3	H18	147.8	138.3
C3	C18	C17	O31	257.9	260.0
C3	C18	C17	C16	152.2	160.4
C17	C18	C3	H18	216.2	204.0
C3	C18	C17	H17	24.3	5.0
C3	C18	O31	H18	236.5	222.2
O31	C18	C17	O31	-0.0	-0.0
O31	C18	C17	C16	254.3	260.4
C17	C18	O31	H18	118.6	109.8
O31	C18	C17	H17	126.4	105.0
C18	O31	C17	C16	109.9	114.3
C18	O31	C17	H17	236.8	251.7
C3	C18	C17	H18	127.2	155.1
C17	C18	O31	C17	360.0	-0.0
O31	C18	C17	H18	229.2	255.1
O31	C17	C18	C16	105.7	99.6
O31	C17	C18	H17	233.6	255.0
C18	C17	C16	C15	265.9	296.3
C16	C17	C18	H17	128.0	155.3
C18	C17	C16	H16	25.9	57.4
C18	C17	C16	H16A	146.1	174.3
C17	O31	C18	C17	360.0	-0.0
C17	O31	C18	H18	241.4	250.2
C18	C17	O31	C16	250.1	245.7
O31	C17	C18	H18	130.8	104.9
C18	C17	O31	H17	123.2	108.3
O31	C17	C16	C15	199.0	230.1
C16	C17	O31	H17	233.1	222.6
O31	C17	C16	H16	319.0	351.2
O31	C17	C16	H16A	79.2	108.1
C18	C17	C16	O31	66.9	66.2
C16	C17	C18	H18	25.1	5.3
C18	C17	C16	H17	213.9	204.0
O31	C17	C16	H17	147.0	137.8
C17	C16	C15	O29	283.8	64.6
C17	C16	C15	C14	161.0	302.3
C15	C16	C17	H16	240.0	238.9
C15	C16	C17	H16A	119.8	122.0
C17	C16	C15	H15	45.0	183.2
H16	C16	C17	H16A	239.8	243.1
C15	C16	C17	H17	52.0	92.3
C17	C16	C15	H16	120.0	120.9
C17	C16	C15	H16A	240.2	238.3
O29	C15	C16	C14	122.8	122.4
O29	C15	C16	H15	238.8	241.4
C16	C15	O29	HO29	330.8	180.0
C16	C15	C14	O28	69.8	324.7
C16	C15	C14	C13	305.1	205.4
C14	C15	C16	H15	115.9	119.1
C16	C15	C14	H14	190.1	84.4
H16	C16	C15	H16A	120.2	117.4
C16	C15	O29	C14	233.9	236.9
O29	C15	C16	H16	163.8	303.8
O29	C15	C16	H16A	43.6	186.4
C16	C15	O29	H15	117.6	119.0
O29	C15	C14	O28	308.0	202.0
O29	C15	C14	C13	183.3	82.6
C14	C15	O29	H15	243.7	242.1
O29	C15	C14	H14	68.2	321.6
C12	C13	C14	C15	261.3	230.2
C16	C15	C14	O29	121.8	122.7
C14	C15	C16	H16	41.0	181.4
C14	C15	C16	H16A	280.8	64.0
C16	C15	C14	H15	242.9	240.6
O29	C15	C14	H15	121.1	117.9
C14	C15	O29	HO29	96.9	303.1
O28	C14	C15	C13	124.7	119.3
O28	C14	C15	H14	239.8	240.3
C15	C14	O28	HO28	272.3	180.0
C15	C14	C13	O24	84.4	50.2
C13	C14	C15	H14	115.1	121.0
C12	C13	C14	O28	137.3	110.8
C15	C14	O28	C13	232.2	240.6
O28	C14	C15	H15	186.9	84.1
C15	C14	O28	H14	116.5	119.1
O28	C14	C13	O24	320.3	290.8
C13	C14	O28	H14	244.3	238.5
C12	C13	C14	O24	176.9	180.0
C14	C13	C12	H12	273.6	165.8
C15	C14	C13	O28	124.0	119.4
C13	C14	C15	H15	62.2	324.8
C15	C14	C13	H14	244.2	240.3
O28	C14	C13	H14	120.1	120.8
C13	C14	O28	HO28	40.1	299.4
C12	C13	O24	C14	183.0	180.0
O24	C13	C12	H12	90.6	345.8
O24	C13	C14	H14	200.2	170.0
O8	C9	H9	C25	119.3	120.7
O8	C9	H9	C10	239.8	240.3
C25	C9	H9	C10	120.4	119.6
H9	C9	C25	H25	357.2	178.7
H9	C9	C25	H25A	117.2	298.8
H9	C9	C25	H25B	237.3	58.8
H9	C9	C10	C11	305.3	95.2
H9	C9	C10	H10	65.3	220.4
H9	C9	C10	H10A	187.9	337.3
H25	C25	C9	C10	117.3	296.4
H25	C25	C9	H9	357.2	178.7
C9	C25	H25	H25A	120.0	120.0
C9	C25	H25	H25B	240.0	240.1
H25A	C25	H25	H25B	120.0	120.0
H25A	C25	C9	C10	237.3	56.5
H25A	C25	C9	H9	117.2	298.8
C9	C25	H25A	H25	240.0	240.0
C9	C25	H25A	H25B	120.0	119.9
H25	C25	H25A	H25B	240.0	240.0
H25B	C25	C9	C10	357.3	176.5
H25B	C25	C9	H9	237.3	58.8
C9	C25	H25B	H25	120.0	120.0
C9	C25	H25B	H25A	240.0	240.0
H25	C25	H25B	H25A	120.0	120.1
C9	C10	H10	C11	235.3	235.8
H10	C10	C9	H9	65.3	220.4
C9	C10	H10	H10A	117.6	117.2
H10	C10	C11	C12	75.3	357.2
C11	C10	H10	H10A	242.3	241.4
H10	C10	C11	H11	255.3	176.3
C9	C10	H10A	C11	123.2	119.5
H10A	C10	C9	H9	187.9	337.3
C9	C10	H10A	H10	241.6	240.7
H10A	C10	C11	C12	312.7	239.2
C11	C10	H10A	H10	118.4	121.3
H10A	C10	C11	H11	132.7	58.3
C10	C11	H11	C12	180.0	180.8
H11	C11	C10	H10	255.3	176.3
H11	C11	C10	H10A	132.7	58.3
H11	C11	C12	C13	242.3	180.1
H11	C11	C12	H12	62.3	0.1
C11	C12	H12	C13	180.0	180.0
H12	C12	C11	H11	62.3	0.1
H12	C12	C13	C14	273.6	165.8
H12	C12	C13	O24	90.6	345.8
HO20	O20	C1	C6	284.9	269.8
C1	C6	H6	C5	180.0	180.0
H6	C6	C5	O21	0.3	359.6
H6	C6	C5	C4	179.7	179.4
O21	C22	H22	H22A	120.0	119.9
O21	C22	H22	H22B	240.0	239.9
H22A	C22	H22	H22B	120.0	120.0
O21	C22	H22A	H22	240.0	240.0
O21	C22	H22A	H22B	120.0	120.0
H22	C22	H22A	H22B	240.0	239.9
O21	C22	H22B	H22	120.0	120.0
O21	C22	H22B	H22A	240.0	240.1
H22	C22	H22B	H22A	120.0	120.0
C5	C4	H4	C3	180.0	180.3
H4	C4	C3	C18	359.0	1.7
C3	C18	H18	O31	132.3	136.8
C3	C18	H18	C17	219.7	203.8
O31	C18	H18	C17	87.4	67.0
H18	C18	O31	C17	241.4	250.2
H18	C18	C17	O31	130.8	104.9
H18	C18	C17	C16	25.1	5.3
H18	C18	C17	H17	257.1	210.0
C18	C17	H17	O31	272.0	293.7
C18	C17	H17	C16	137.0	157.0
H17	C17	C18	H18	257.1	210.0
O31	C17	H17	C16	225.0	223.3
H17	C17	C16	C15	52.0	92.3
H17	C17	C16	H16	172.0	213.4
H17	C17	C16	H16A	292.2	330.3
C17	C16	H16	C15	239.6	236.5
H16	C16	C17	H17	172.0	213.4
C17	C16	H16	H16A	119.8	117.8
H16	C16	C15	O29	163.8	303.8
H16	C16	C15	C14	41.0	181.4
C15	C16	H16	H16A	240.2	241.3
H16	C16	C15	H15	285.1	62.3
C17	C16	H16A	C15	120.3	124.0
H16A	C16	C17	H17	292.2	330.3
C17	C16	H16A	H16	240.1	242.4
H16A	C16	C15	O29	43.6	186.4
H16A	C16	C15	C14	280.8	64.0
C15	C16	H16A	H16	119.9	118.4
H16A	C16	C15	H15	164.8	304.9
C16	C15	H15	O29	241.8	239.9
C16	C15	H15	C14	122.6	120.9
H15	C15	C16	H16	285.1	62.3
H15	C15	C16	H16A	164.8	304.9
O29	C15	H15	C14	240.8	241.0
H15	C15	O29	HO29	213.3	61.0
H15	C15	C14	O28	186.9	84.1
H15	C15	C14	C13	62.2	324.8
H15	C15	C14	H14	307.1	203.8
HO29	O29	C15	C14	96.9	303.1
HO29	O29	C15	H15	213.3	61.0
C15	C14	H14	O28	241.6	240.5
C15	C14	H14	C13	122.5	120.0
H14	C14	C15	H15	307.1	203.8
O28	C14	H14	C13	240.9	239.5
H14	C14	O28	HO28	155.7	60.9
H14	C14	C13	O24	200.2	170.0
HO28	O28	C14	C13	40.1	299.4
HO28	O28	C14	H14	155.7	60.9