PDB Chemical Component HMU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HMU
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.430 |
1.346 |
N1 |
C6 |
1.396 |
1.368 |
N1 |
H1 |
1.020 |
0.969 |
C2 |
O2 |
1.367 |
1.216 |
C2 |
N3 |
1.439 |
1.345 |
N3 |
C4 |
1.420 |
1.348 |
N3 |
H2 |
1.019 |
0.970 |
C4 |
O4 |
1.263 |
1.218 |
C4 |
C5 |
1.505 |
1.415 |
O3 |
CM5 |
1.405 |
1.429 |
O3 |
H3 |
0.990 |
0.968 |
C5 |
CM5 |
1.568 |
1.508 |
C5 |
C6 |
1.426 |
1.350 |
CM5 |
HM51 |
1.100 |
1.089 |
CM5 |
HM52 |
1.100 |
1.090 |
C6 |
H6 |
1.061 |
1.080 |
Bond Angles for HMU
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
127.3 |
120.6 |
C2 |
N1 |
H1 |
106.0 |
119.7 |
N1 |
C2 |
O2 |
119.6 |
119.5 |
N1 |
C2 |
N3 |
111.7 |
120.9 |
C6 |
N1 |
H1 |
106.0 |
119.7 |
N1 |
C6 |
C5 |
121.5 |
119.7 |
N1 |
C6 |
H6 |
119.2 |
120.2 |
O2 |
C2 |
N3 |
128.7 |
119.6 |
C2 |
N3 |
C4 |
124.4 |
120.3 |
C2 |
N3 |
H2 |
118.5 |
119.8 |
C4 |
N3 |
H2 |
117.1 |
119.8 |
N3 |
C4 |
O4 |
123.7 |
120.3 |
N3 |
C4 |
C5 |
120.9 |
119.3 |
O4 |
C4 |
C5 |
115.2 |
120.3 |
C4 |
C5 |
CM5 |
126.3 |
120.4 |
C4 |
C5 |
C6 |
114.0 |
119.1 |
CM5 |
O3 |
H3 |
109.5 |
106.8 |
O3 |
CM5 |
C5 |
113.2 |
109.5 |
O3 |
CM5 |
HM51 |
108.5 |
109.5 |
O3 |
CM5 |
HM52 |
107.3 |
109.4 |
CM5 |
C5 |
C6 |
119.7 |
120.4 |
C5 |
CM5 |
HM51 |
108.5 |
109.5 |
C5 |
CM5 |
HM52 |
107.3 |
109.4 |
C5 |
C6 |
H6 |
119.2 |
120.1 |
HM51 |
CM5 |
HM52 |
112.1 |
109.5 |
Torsion Angles for HMU
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
H1 |
125.3 |
180.0 |
C2 |
N1 |
C6 |
C5 |
2.6 |
0.0 |
C2 |
N1 |
C6 |
H6 |
182.6 |
180.0 |
O2 |
C2 |
N1 |
N3 |
180.5 |
180.0 |
N1 |
C2 |
N3 |
C4 |
358.7 |
359.8 |
N1 |
C2 |
N3 |
H2 |
178.7 |
180.0 |
C2 |
N1 |
C6 |
H1 |
234.7 |
180.0 |
C6 |
N1 |
C2 |
O2 |
180.3 |
180.0 |
C6 |
N1 |
C2 |
N3 |
359.8 |
360.0 |
C4 |
C5 |
C6 |
N1 |
356.8 |
0.1 |
CM5 |
C5 |
C6 |
N1 |
177.2 |
180.0 |
C5 |
C6 |
N1 |
H6 |
180.0 |
180.1 |
C2 |
N1 |
H1 |
C6 |
137.5 |
180.0 |
H1 |
N1 |
C2 |
O2 |
55.0 |
360.0 |
H1 |
N1 |
C2 |
N3 |
234.5 |
180.0 |
H1 |
N1 |
C6 |
C5 |
127.9 |
180.0 |
H1 |
N1 |
C6 |
H6 |
307.9 |
360.0 |
O2 |
C2 |
N1 |
C6 |
180.3 |
180.0 |
O2 |
C2 |
N1 |
H1 |
55.0 |
360.0 |
N1 |
C2 |
O2 |
N3 |
179.4 |
180.0 |
O2 |
C2 |
N3 |
C4 |
178.1 |
179.8 |
O2 |
C2 |
N3 |
H2 |
358.1 |
0.0 |
N3 |
C2 |
N1 |
C6 |
359.8 |
360.0 |
N3 |
C2 |
N1 |
H1 |
234.5 |
180.0 |
N1 |
C2 |
N3 |
O2 |
180.6 |
180.0 |
C4 |
N3 |
C2 |
H2 |
180.0 |
179.8 |
C2 |
N3 |
C4 |
O4 |
184.2 |
180.0 |
C2 |
N3 |
C4 |
C5 |
0.5 |
0.4 |
C2 |
N3 |
C4 |
H2 |
180.0 |
180.2 |
O4 |
C4 |
N3 |
C5 |
183.7 |
179.6 |
N3 |
C4 |
C5 |
CM5 |
181.3 |
179.8 |
N3 |
C4 |
C5 |
C6 |
1.8 |
359.6 |
C2 |
N3 |
H2 |
C4 |
180.0 |
179.8 |
H2 |
N3 |
C4 |
O4 |
4.2 |
359.8 |
H2 |
N3 |
C4 |
C5 |
180.5 |
180.2 |
O4 |
C4 |
N3 |
H2 |
4.2 |
359.8 |
N3 |
C4 |
O4 |
C5 |
176.5 |
180.4 |
O4 |
C4 |
C5 |
CM5 |
357.9 |
0.2 |
O4 |
C4 |
C5 |
C6 |
178.4 |
180.0 |
N1 |
C6 |
C5 |
C4 |
356.8 |
0.1 |
C5 |
C4 |
N3 |
H2 |
180.5 |
180.2 |
N3 |
C4 |
C5 |
O4 |
183.4 |
179.6 |
O3 |
CM5 |
C5 |
C4 |
41.6 |
179.8 |
CM5 |
C5 |
C4 |
C6 |
179.5 |
180.2 |
C4 |
C5 |
CM5 |
HM51 |
162.2 |
59.8 |
C4 |
C5 |
CM5 |
HM52 |
283.5 |
299.7 |
C4 |
C5 |
C6 |
H6 |
176.8 |
180.2 |
C4 |
C5 |
CM5 |
O3 |
41.6 |
179.8 |
O3 |
CM5 |
C5 |
C6 |
221.1 |
0.0 |
C5 |
CM5 |
O3 |
HM51 |
120.6 |
240.0 |
C5 |
CM5 |
O3 |
HM52 |
241.8 |
119.9 |
HM51 |
CM5 |
O3 |
HM52 |
121.3 |
239.9 |
H3 |
O3 |
CM5 |
C5 |
147.4 |
180.0 |
H3 |
O3 |
CM5 |
HM51 |
26.8 |
300.0 |
H3 |
O3 |
CM5 |
HM52 |
265.5 |
60.1 |
N1 |
C6 |
C5 |
CM5 |
177.2 |
180.0 |
C4 |
C5 |
CM5 |
C6 |
180.5 |
179.8 |
C5 |
CM5 |
O3 |
H3 |
147.4 |
180.0 |
O3 |
CM5 |
C5 |
HM51 |
239.5 |
120.1 |
O3 |
CM5 |
C5 |
HM52 |
118.2 |
240.1 |
CM5 |
C5 |
C6 |
H6 |
357.2 |
0.0 |
HM51 |
CM5 |
C5 |
HM52 |
238.7 |
120.0 |
C5 |
C6 |
N1 |
H1 |
127.9 |
180.0 |
N1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
CM5 |
179.6 |
180.2 |
C6 |
C5 |
CM5 |
HM51 |
341.7 |
240.0 |
C6 |
C5 |
CM5 |
HM52 |
102.9 |
119.9 |
HM51 |
CM5 |
O3 |
H3 |
26.8 |
300.0 |
O3 |
CM5 |
HM51 |
C5 |
123.4 |
240.0 |
O3 |
CM5 |
HM51 |
HM52 |
241.7 |
120.0 |
HM51 |
CM5 |
C5 |
C6 |
341.7 |
240.0 |
C5 |
CM5 |
HM51 |
HM52 |
118.3 |
240.0 |
HM52 |
CM5 |
O3 |
H3 |
265.5 |
60.1 |
O3 |
CM5 |
HM52 |
C5 |
238.1 |
119.9 |
O3 |
CM5 |
HM52 |
HM51 |
119.0 |
239.9 |
HM52 |
CM5 |
C5 |
C6 |
102.9 |
119.9 |
C5 |
CM5 |
HM52 |
HM51 |
240.9 |
120.0 |
H6 |
C6 |
N1 |
H1 |
307.9 |
360.0 |
N1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |