PDB Chemical Component HMR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HMR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CB |
1.490 |
1.468 |
| N |
H |
1.020 |
1.009 |
| N |
H2 |
1.020 |
1.010 |
| CB |
CC |
1.520 |
1.529 |
| CB |
CA |
1.539 |
1.529 |
| CB |
HB |
1.115 |
1.090 |
| CC |
CG |
1.525 |
1.528 |
| CC |
HB2 |
1.115 |
1.090 |
| CC |
HB3 |
1.115 |
1.089 |
| CG |
CD |
1.498 |
1.529 |
| CG |
HG2 |
1.116 |
1.090 |
| CG |
HG3 |
1.115 |
1.089 |
| CD |
NE |
1.472 |
1.464 |
| CD |
HD2 |
1.115 |
1.090 |
| CD |
HD3 |
1.116 |
1.089 |
| NE |
CZ |
1.324 |
1.374 |
| NE |
HE |
1.019 |
0.970 |
| CZ |
NH1 |
1.348 |
1.304 |
| CZ |
NH2 |
1.317 |
1.374 |
| NH1 |
HH1 |
1.020 |
0.970 |
| NH2 |
HH21 |
1.020 |
0.970 |
| NH2 |
HH22 |
1.019 |
0.971 |
| C |
O |
1.258 |
1.207 |
| C |
CA |
1.539 |
1.507 |
| C |
OXT |
1.349 |
1.342 |
| CA |
HC1 |
1.116 |
1.089 |
| CA |
HC2 |
1.115 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for HMR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
N |
H |
111.1 |
106.7 |
| CB |
N |
H2 |
111.6 |
106.7 |
| N |
CB |
CC |
111.1 |
109.5 |
| N |
CB |
CA |
113.1 |
109.5 |
| N |
CB |
HB |
106.2 |
109.5 |
| H |
N |
H2 |
111.7 |
106.7 |
| CC |
CB |
CA |
110.7 |
109.5 |
| CC |
CB |
HB |
108.8 |
109.4 |
| CB |
CC |
CG |
117.2 |
109.5 |
| CB |
CC |
HB2 |
109.4 |
109.4 |
| CB |
CC |
HB3 |
109.4 |
109.5 |
| CA |
CB |
HB |
106.5 |
109.4 |
| CB |
CA |
C |
101.1 |
109.5 |
| CB |
CA |
HC1 |
115.4 |
109.5 |
| CB |
CA |
HC2 |
115.5 |
109.5 |
| CG |
CC |
HB2 |
109.4 |
109.4 |
| CG |
CC |
HB3 |
109.4 |
109.5 |
| CC |
CG |
CD |
107.2 |
109.5 |
| CC |
CG |
HG2 |
113.1 |
109.4 |
| CC |
CG |
HG3 |
113.1 |
109.5 |
| HB2 |
CC |
HB3 |
100.8 |
109.4 |
| CD |
CG |
HG2 |
113.1 |
109.5 |
| CD |
CG |
HG3 |
113.1 |
109.5 |
| CG |
CD |
NE |
110.5 |
109.5 |
| CG |
CD |
HD2 |
111.9 |
109.5 |
| CG |
CD |
HD3 |
111.8 |
109.5 |
| HG2 |
CG |
HG3 |
97.3 |
109.5 |
| NE |
CD |
HD2 |
111.9 |
109.4 |
| NE |
CD |
HD3 |
111.9 |
109.5 |
| CD |
NE |
CZ |
118.0 |
120.1 |
| CD |
NE |
HE |
109.1 |
120.0 |
| HD2 |
CD |
HD3 |
98.5 |
109.4 |
| CZ |
NE |
HE |
109.2 |
119.9 |
| NE |
CZ |
NH1 |
117.6 |
120.0 |
| NE |
CZ |
NH2 |
122.0 |
120.1 |
| NH1 |
CZ |
NH2 |
120.4 |
119.9 |
| CZ |
NH1 |
HH1 |
108.9 |
120.0 |
| CZ |
NH2 |
HH21 |
122.0 |
120.1 |
| CZ |
NH2 |
HH22 |
107.7 |
119.9 |
| HH21 |
NH2 |
HH22 |
107.8 |
120.0 |
| O |
C |
CA |
117.1 |
120.0 |
| O |
C |
OXT |
124.2 |
120.0 |
| CA |
C |
OXT |
118.2 |
120.0 |
| C |
CA |
HC1 |
115.4 |
109.5 |
| C |
CA |
HC2 |
115.4 |
109.4 |
| C |
OXT |
HXT |
124.2 |
120.0 |
| HC1 |
CA |
HC2 |
95.0 |
109.4 |
Torsion Angles for HMR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CB |
H2 |
125.3 |
113.7 |
| CC |
CB |
N |
CA |
234.7 |
239.9 |
| CC |
CB |
N |
HB |
118.2 |
120.0 |
| N |
CB |
CC |
CG |
149.2 |
300.1 |
| N |
CB |
CC |
HB2 |
274.4 |
60.1 |
| N |
CB |
CC |
HB3 |
24.0 |
180.0 |
| CA |
CB |
N |
HB |
243.5 |
240.1 |
| N |
CB |
CA |
C |
75.4 |
59.9 |
| N |
CB |
CA |
HC1 |
200.7 |
180.0 |
| N |
CB |
CA |
HC2 |
310.1 |
299.9 |
| CB |
N |
H |
H2 |
234.7 |
246.2 |
| H |
N |
CB |
CC |
180.0 |
53.7 |
| H |
N |
CB |
CA |
305.3 |
173.8 |
| H |
N |
CB |
HB |
61.9 |
293.7 |
| CB |
N |
H2 |
H |
125.0 |
113.8 |
| H2 |
N |
CB |
CC |
54.7 |
299.9 |
| H2 |
N |
CB |
CA |
180.0 |
60.0 |
| H2 |
N |
CB |
HB |
296.6 |
180.0 |
| CC |
CB |
N |
H |
180.0 |
53.7 |
| CC |
CB |
N |
H2 |
54.7 |
299.9 |
| N |
CB |
CC |
CA |
126.6 |
120.1 |
| N |
CB |
CC |
HB |
243.4 |
240.0 |
| CA |
CB |
CC |
HB |
116.8 |
119.9 |
| CC |
CB |
CA |
C |
200.9 |
180.0 |
| CC |
CB |
CA |
HC1 |
326.2 |
300.1 |
| CC |
CB |
CA |
HC2 |
75.6 |
60.1 |
| CG |
CC |
CB |
HB2 |
234.8 |
240.0 |
| CG |
CC |
CB |
HB3 |
125.2 |
120.1 |
| CB |
CC |
CG |
CD |
182.9 |
180.0 |
| CB |
CC |
CG |
HG2 |
308.2 |
299.9 |
| CB |
CC |
CG |
HG3 |
57.6 |
59.9 |
| HB2 |
CC |
CB |
HB3 |
250.5 |
240.1 |
| CA |
CB |
N |
H |
305.3 |
173.8 |
| CA |
CB |
N |
H2 |
180.0 |
60.0 |
| N |
CB |
CA |
CC |
234.5 |
239.9 |
| N |
CB |
CA |
HB |
116.3 |
120.0 |
| CC |
CB |
CA |
HB |
241.9 |
240.1 |
| CA |
CB |
CC |
CG |
22.5 |
180.0 |
| CA |
CB |
CC |
HB2 |
147.8 |
300.0 |
| CA |
CB |
CC |
HB3 |
257.3 |
59.9 |
| O |
C |
CA |
CB |
73.6 |
0.1 |
| CB |
CA |
C |
OXT |
261.2 |
180.0 |
| C |
CA |
CB |
HC1 |
234.7 |
239.9 |
| C |
CA |
CB |
HC2 |
125.3 |
120.0 |
| HC1 |
CA |
CB |
HC2 |
250.6 |
240.0 |
| HB |
CB |
N |
H |
61.9 |
293.7 |
| HB |
CB |
N |
H2 |
296.6 |
180.0 |
| N |
CB |
HB |
CC |
119.7 |
120.0 |
| N |
CB |
HB |
CA |
239.1 |
240.0 |
| CC |
CB |
HB |
CA |
119.4 |
120.0 |
| HB |
CB |
CC |
CG |
265.8 |
60.1 |
| HB |
CB |
CC |
HB2 |
31.0 |
180.0 |
| HB |
CB |
CC |
HB3 |
140.6 |
300.0 |
| HB |
CB |
CA |
C |
319.0 |
299.9 |
| HB |
CB |
CA |
HC1 |
84.3 |
60.0 |
| HB |
CB |
CA |
HC2 |
193.7 |
180.0 |
| CG |
CC |
CB |
CA |
22.5 |
180.0 |
| CG |
CC |
CB |
HB |
265.8 |
60.1 |
| CB |
CC |
CG |
HB2 |
125.2 |
120.0 |
| CB |
CC |
CG |
HB3 |
234.8 |
239.9 |
| HB2 |
CC |
CG |
HB3 |
109.5 |
119.9 |
| CD |
CG |
CC |
HG2 |
234.7 |
240.0 |
| CD |
CG |
CC |
HG3 |
125.3 |
120.1 |
| CC |
CG |
CD |
NE |
295.8 |
180.0 |
| CC |
CG |
CD |
HD2 |
61.1 |
300.0 |
| CC |
CG |
CD |
HD3 |
170.6 |
59.9 |
| HG2 |
CG |
CC |
HG3 |
250.6 |
240.0 |
| HB2 |
CC |
CB |
CA |
147.8 |
300.0 |
| HB2 |
CC |
CB |
HB |
31.0 |
180.0 |
| CB |
CC |
HB2 |
CG |
230.4 |
240.0 |
| CB |
CC |
HB2 |
HB3 |
115.2 |
120.0 |
| CG |
CC |
HB2 |
HB3 |
244.8 |
240.0 |
| HB2 |
CC |
CG |
CD |
57.7 |
60.0 |
| HB2 |
CC |
CG |
HG2 |
183.0 |
180.0 |
| HB2 |
CC |
CG |
HG3 |
292.4 |
299.9 |
| HB3 |
CC |
CB |
CA |
257.3 |
59.9 |
| HB3 |
CC |
CB |
HB |
140.6 |
300.0 |
| CB |
CC |
HB3 |
CG |
129.6 |
120.1 |
| CB |
CC |
HB3 |
HB2 |
244.8 |
240.1 |
| CG |
CC |
HB3 |
HB2 |
115.2 |
119.9 |
| HB3 |
CC |
CG |
CD |
308.2 |
300.1 |
| HB3 |
CC |
CG |
HG2 |
73.5 |
60.0 |
| HB3 |
CC |
CG |
HG3 |
182.9 |
180.0 |
| CD |
CG |
CC |
HB2 |
57.7 |
60.0 |
| CD |
CG |
CC |
HB3 |
308.2 |
300.1 |
| CC |
CG |
CD |
HG2 |
125.3 |
119.9 |
| CC |
CG |
CD |
HG3 |
234.7 |
239.9 |
| HG2 |
CG |
CD |
HG3 |
109.4 |
120.0 |
| NE |
CD |
CG |
HD2 |
234.7 |
240.0 |
| NE |
CD |
CG |
HD3 |
125.3 |
120.1 |
| CG |
CD |
NE |
CZ |
185.2 |
180.0 |
| CG |
CD |
NE |
HE |
59.9 |
360.0 |
| HD2 |
CD |
CG |
HD3 |
250.6 |
240.1 |
| HG2 |
CG |
CC |
HB2 |
183.0 |
180.0 |
| HG2 |
CG |
CC |
HB3 |
73.5 |
60.0 |
| CC |
CG |
HG2 |
CD |
237.9 |
240.0 |
| CC |
CG |
HG2 |
HG3 |
119.0 |
120.0 |
| CD |
CG |
HG2 |
HG3 |
241.0 |
240.0 |
| HG2 |
CG |
CD |
NE |
170.5 |
60.1 |
| HG2 |
CG |
CD |
HD2 |
295.8 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
45.3 |
300.0 |
| HG3 |
CG |
CC |
HB2 |
292.4 |
299.9 |
| HG3 |
CG |
CC |
HB3 |
182.9 |
180.0 |
| CC |
CG |
HG3 |
CD |
122.1 |
120.1 |
| CC |
CG |
HG3 |
HG2 |
241.0 |
240.1 |
| CD |
CG |
HG3 |
HG2 |
119.0 |
120.0 |
| HG3 |
CG |
CD |
NE |
61.1 |
300.1 |
| HG3 |
CG |
CD |
HD2 |
186.5 |
60.1 |
| HG3 |
CG |
CD |
HD3 |
295.9 |
180.0 |
| NE |
CD |
CG |
HG2 |
170.5 |
60.1 |
| NE |
CD |
CG |
HG3 |
61.1 |
300.1 |
| CG |
CD |
NE |
HD2 |
125.3 |
120.0 |
| CG |
CD |
NE |
HD3 |
234.8 |
239.9 |
| HD2 |
CD |
NE |
HD3 |
109.5 |
119.9 |
| CZ |
NE |
CD |
HE |
125.3 |
180.0 |
| CD |
NE |
CZ |
NH1 |
352.9 |
360.0 |
| CD |
NE |
CZ |
NH2 |
171.7 |
179.9 |
| HD2 |
CD |
CG |
HG2 |
295.8 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
186.5 |
60.1 |
| CG |
CD |
HD2 |
NE |
235.5 |
239.9 |
| CG |
CD |
HD2 |
HD3 |
117.7 |
120.0 |
| NE |
CD |
HD2 |
HD3 |
242.2 |
240.0 |
| HD2 |
CD |
NE |
CZ |
59.9 |
60.0 |
| HD2 |
CD |
NE |
HE |
294.6 |
240.0 |
| HD3 |
CD |
CG |
HG2 |
45.3 |
300.0 |
| HD3 |
CD |
CG |
HG3 |
295.9 |
180.0 |
| CG |
CD |
HD3 |
NE |
124.5 |
120.1 |
| CG |
CD |
HD3 |
HD2 |
242.3 |
240.0 |
| NE |
CD |
HD3 |
HD2 |
117.8 |
119.9 |
| HD3 |
CD |
NE |
CZ |
310.5 |
300.1 |
| HD3 |
CD |
NE |
HE |
185.2 |
120.0 |
| CZ |
NE |
CD |
HD2 |
59.9 |
60.0 |
| CZ |
NE |
CD |
HD3 |
310.5 |
300.1 |
| CD |
NE |
CZ |
HE |
234.8 |
180.0 |
| NH1 |
CZ |
NE |
NH2 |
181.1 |
180.0 |
| NE |
CZ |
NH1 |
HH1 |
336.2 |
180.0 |
| NE |
CZ |
NH2 |
HH21 |
180.0 |
179.9 |
| NE |
CZ |
NH2 |
HH22 |
54.7 |
0.0 |
| HE |
NE |
CD |
HD2 |
294.6 |
240.0 |
| HE |
NE |
CD |
HD3 |
185.2 |
120.0 |
| CD |
NE |
HE |
CZ |
130.2 |
180.0 |
| HE |
NE |
CZ |
NH1 |
118.1 |
180.0 |
| HE |
NE |
CZ |
NH2 |
297.0 |
360.0 |
| NH1 |
CZ |
NE |
HE |
118.1 |
180.0 |
| NE |
CZ |
NH1 |
NH2 |
178.9 |
180.0 |
| NH1 |
CZ |
NH2 |
HH21 |
358.9 |
359.9 |
| NH1 |
CZ |
NH2 |
HH22 |
233.6 |
180.0 |
| NH2 |
CZ |
NE |
HE |
297.0 |
360.0 |
| NE |
CZ |
NH2 |
NH1 |
181.1 |
180.0 |
| NH2 |
CZ |
NH1 |
HH1 |
157.3 |
0.0 |
| HH21 |
NH2 |
CZ |
HH22 |
125.3 |
179.9 |
| HH1 |
NH1 |
CZ |
NH2 |
157.3 |
0.0 |
| CZ |
NH2 |
HH21 |
HH22 |
234.7 |
180.1 |
| CZ |
NH2 |
HH22 |
HH21 |
133.4 |
179.9 |
| CB |
CA |
C |
O |
73.6 |
0.1 |
| CA |
C |
O |
OXT |
188.1 |
179.9 |
| O |
C |
CA |
HC1 |
308.3 |
240.0 |
| O |
C |
CA |
HC2 |
199.0 |
120.1 |
| O |
C |
OXT |
HXT |
180.0 |
360.0 |
| C |
CA |
CB |
HB |
319.0 |
299.9 |
| CB |
CA |
C |
HC1 |
125.3 |
120.1 |
| CB |
CA |
C |
HC2 |
234.7 |
240.0 |
| O |
C |
CA |
OXT |
172.4 |
180.1 |
| CA |
C |
OXT |
HXT |
351.8 |
180.0 |
| HC1 |
CA |
C |
HC2 |
109.4 |
119.9 |
| O |
C |
OXT |
CA |
188.2 |
179.9 |
| OXT |
C |
CA |
HC1 |
135.9 |
59.9 |
| OXT |
C |
CA |
HC2 |
26.5 |
300.0 |
| HC1 |
CA |
CB |
HB |
84.3 |
60.0 |
| CB |
CA |
HC1 |
C |
242.5 |
239.9 |
| CB |
CA |
HC1 |
HC2 |
121.3 |
120.0 |
| HC1 |
CA |
C |
OXT |
135.9 |
59.9 |
| C |
CA |
HC1 |
HC2 |
238.8 |
240.1 |
| HC2 |
CA |
CB |
HB |
193.7 |
180.0 |
| CB |
CA |
HC2 |
C |
117.6 |
120.0 |
| CB |
CA |
HC2 |
HC1 |
238.7 |
240.0 |
| HC2 |
CA |
C |
OXT |
26.5 |
300.0 |
| C |
CA |
HC2 |
HC1 |
121.2 |
120.0 |