PDB Chemical Component HMH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HMH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CM2 |
C2A |
1.483 |
1.508 |
| CM2 |
HCM1 |
1.099 |
1.090 |
| CM2 |
HCM2 |
1.100 |
1.088 |
| CM2 |
HCM3 |
1.100 |
1.090 |
| N1A |
C2A |
1.377 |
1.317 |
| N1A |
C6A |
1.337 |
1.325 |
| C2A |
N3A |
1.340 |
1.317 |
| N3A |
C4A |
1.388 |
1.330 |
| C4A |
N4A |
1.370 |
1.385 |
| C4A |
C5A |
1.403 |
1.395 |
| N4A |
HN41 |
1.000 |
0.969 |
| N4A |
HN42 |
1.000 |
0.969 |
| C5A |
C6A |
1.408 |
1.381 |
| C5A |
C7A |
1.520 |
1.507 |
| C6A |
HC6 |
1.080 |
1.080 |
| C7A |
O1 |
1.432 |
1.429 |
| C7A |
HC71 |
1.100 |
1.089 |
| C7A |
HC72 |
1.100 |
1.090 |
| O1 |
HO1 |
0.950 |
0.968 |
Bond Angles for HMH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2A |
CM2 |
HCM1 |
109.5 |
109.5 |
| C2A |
CM2 |
HCM2 |
109.4 |
109.5 |
| C2A |
CM2 |
HCM3 |
109.5 |
109.4 |
| CM2 |
C2A |
N1A |
119.6 |
119.1 |
| CM2 |
C2A |
N3A |
120.3 |
119.1 |
| HCM1 |
CM2 |
HCM2 |
109.5 |
109.4 |
| HCM1 |
CM2 |
HCM3 |
109.5 |
109.4 |
| HCM2 |
CM2 |
HCM3 |
109.5 |
109.6 |
| C2A |
N1A |
C6A |
122.2 |
121.0 |
| N1A |
C2A |
N3A |
120.1 |
121.8 |
| N1A |
C6A |
C5A |
119.3 |
119.2 |
| N1A |
C6A |
HC6 |
120.3 |
120.3 |
| C2A |
N3A |
C4A |
120.2 |
120.7 |
| N3A |
C4A |
N4A |
121.9 |
120.5 |
| N3A |
C4A |
C5A |
119.9 |
118.9 |
| N4A |
C4A |
C5A |
118.1 |
120.6 |
| C4A |
N4A |
HN41 |
109.5 |
120.1 |
| C4A |
N4A |
HN42 |
109.5 |
119.9 |
| C4A |
C5A |
C6A |
118.2 |
118.4 |
| C4A |
C5A |
C7A |
122.5 |
120.9 |
| HN41 |
N4A |
HN42 |
109.4 |
120.0 |
| C6A |
C5A |
C7A |
119.2 |
120.8 |
| C5A |
C6A |
HC6 |
120.4 |
120.5 |
| C5A |
C7A |
O1 |
108.8 |
109.5 |
| C5A |
C7A |
HC71 |
109.7 |
109.5 |
| C5A |
C7A |
HC72 |
109.8 |
109.5 |
| O1 |
C7A |
HC71 |
109.7 |
109.5 |
| O1 |
C7A |
HC72 |
109.8 |
109.4 |
| C7A |
O1 |
HO1 |
109.5 |
106.8 |
| HC71 |
C7A |
HC72 |
108.9 |
109.4 |
Torsion Angles for HMH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HCM1 |
CM2 |
C2A |
HCM2 |
240.0 |
240.0 |
| HCM1 |
CM2 |
C2A |
HCM3 |
120.0 |
119.9 |
| HCM2 |
CM2 |
C2A |
HCM3 |
240.0 |
239.9 |
| CM2 |
C2A |
N1A |
C6A |
180.2 |
180.0 |
| N1A |
C2A |
CM2 |
N3A |
179.7 |
180.2 |
| CM2 |
C2A |
N3A |
C4A |
178.5 |
179.7 |
| C2A |
CM2 |
HCM1 |
HCM2 |
120.0 |
120.0 |
| C2A |
CM2 |
HCM1 |
HCM3 |
240.0 |
240.1 |
| HCM1 |
CM2 |
C2A |
N1A |
229.0 |
90.0 |
| HCM1 |
CM2 |
C2A |
N3A |
49.3 |
269.8 |
| HCM2 |
CM2 |
HCM1 |
HCM3 |
120.0 |
120.1 |
| C2A |
CM2 |
HCM2 |
HCM1 |
240.0 |
240.0 |
| C2A |
CM2 |
HCM2 |
HCM3 |
120.0 |
120.0 |
| HCM2 |
CM2 |
C2A |
N1A |
349.0 |
209.9 |
| HCM2 |
CM2 |
C2A |
N3A |
169.2 |
29.7 |
| HCM1 |
CM2 |
HCM2 |
HCM3 |
240.0 |
240.0 |
| C2A |
CM2 |
HCM3 |
HCM1 |
120.0 |
119.9 |
| C2A |
CM2 |
HCM3 |
HCM2 |
240.0 |
239.9 |
| HCM3 |
CM2 |
C2A |
N1A |
109.0 |
330.1 |
| HCM3 |
CM2 |
C2A |
N3A |
289.3 |
149.9 |
| HCM1 |
CM2 |
HCM3 |
HCM2 |
120.0 |
120.0 |
| N1A |
C2A |
CM2 |
HCM1 |
229.0 |
90.0 |
| N1A |
C2A |
CM2 |
HCM2 |
349.0 |
209.9 |
| N1A |
C2A |
CM2 |
HCM3 |
109.0 |
330.1 |
| CM2 |
C2A |
N1A |
N3A |
180.3 |
179.8 |
| C2A |
N1A |
C6A |
C5A |
2.0 |
-0.0 |
| C2A |
N1A |
C6A |
HC6 |
182.0 |
180.0 |
| N1A |
C2A |
N3A |
C4A |
358.8 |
359.5 |
| C6A |
N1A |
C2A |
N3A |
359.9 |
0.2 |
| C4A |
C5A |
C6A |
N1A |
357.4 |
0.0 |
| N1A |
C6A |
C5A |
C7A |
181.1 |
180.0 |
| C5A |
C6A |
N1A |
HC6 |
180.0 |
180.0 |
| N3A |
C2A |
CM2 |
HCM1 |
49.3 |
269.8 |
| N3A |
C2A |
CM2 |
HCM2 |
169.2 |
29.7 |
| N3A |
C2A |
CM2 |
HCM3 |
289.3 |
149.9 |
| CM2 |
C2A |
N3A |
N1A |
179.7 |
180.2 |
| N3A |
C2A |
N1A |
C6A |
359.9 |
0.2 |
| C2A |
N3A |
C4A |
N4A |
179.3 |
180.2 |
| C2A |
N3A |
C4A |
C5A |
0.6 |
0.5 |
| N4A |
C4A |
N3A |
C5A |
178.8 |
179.7 |
| N3A |
C4A |
N4A |
HN41 |
244.2 |
0.3 |
| N3A |
C4A |
N4A |
HN42 |
4.2 |
180.3 |
| N3A |
C4A |
C5A |
C6A |
1.3 |
359.7 |
| N3A |
C4A |
C5A |
C7A |
177.5 |
179.8 |
| N3A |
C4A |
N4A |
C5A |
181.2 |
180.3 |
| N4A |
C4A |
C5A |
C6A |
182.5 |
180.0 |
| N4A |
C4A |
C5A |
C7A |
358.7 |
0.0 |
| HN41 |
N4A |
C4A |
HN42 |
240.0 |
179.9 |
| N1A |
C6A |
C5A |
C4A |
357.4 |
0.0 |
| N3A |
C4A |
C5A |
N4A |
178.8 |
179.7 |
| C5A |
C4A |
N4A |
HN41 |
63.0 |
180.0 |
| C5A |
C4A |
N4A |
HN42 |
183.0 |
0.0 |
| C6A |
C5A |
C4A |
C7A |
183.8 |
180.0 |
| C4A |
C5A |
C6A |
HC6 |
177.4 |
180.0 |
| C4A |
C5A |
C7A |
O1 |
19.4 |
180.0 |
| C4A |
C5A |
C7A |
HC71 |
139.4 |
300.0 |
| C4A |
C5A |
C7A |
HC72 |
259.1 |
60.0 |
| HN41 |
N4A |
C4A |
C5A |
63.0 |
180.0 |
| C4A |
N4A |
HN41 |
HN42 |
120.0 |
180.1 |
| HN42 |
N4A |
C4A |
C5A |
183.0 |
0.0 |
| C4A |
N4A |
HN42 |
HN41 |
240.0 |
179.9 |
| N1A |
C6A |
C5A |
HC6 |
180.0 |
180.0 |
| C4A |
C5A |
C6A |
C7A |
176.3 |
180.0 |
| C6A |
C5A |
C7A |
O1 |
195.5 |
-0.0 |
| C6A |
C5A |
C7A |
HC71 |
315.5 |
120.1 |
| C6A |
C5A |
C7A |
HC72 |
75.2 |
240.0 |
| C4A |
C5A |
C7A |
C6A |
183.9 |
180.0 |
| C7A |
C5A |
C6A |
HC6 |
1.1 |
-0.0 |
| O1 |
C7A |
C5A |
HC71 |
240.0 |
239.9 |
| O1 |
C7A |
C5A |
HC72 |
120.3 |
120.0 |
| C5A |
C7A |
O1 |
HO1 |
243.4 |
179.9 |
| HC71 |
C7A |
C5A |
HC72 |
240.3 |
240.1 |
| N1A |
C6A |
HC6 |
C5A |
180.0 |
180.0 |
| HC6 |
C6A |
C5A |
C7A |
1.1 |
-0.0 |
| C5A |
C7A |
O1 |
HC71 |
120.0 |
120.0 |
| C5A |
C7A |
O1 |
HC72 |
239.7 |
240.0 |
| HC71 |
C7A |
O1 |
HC72 |
119.7 |
119.9 |
| C5A |
C7A |
HC71 |
O1 |
240.5 |
239.9 |
| C5A |
C7A |
HC71 |
HC72 |
120.3 |
120.0 |
| O1 |
C7A |
HC71 |
HC72 |
239.7 |
240.0 |
| HC71 |
C7A |
O1 |
HO1 |
123.4 |
59.9 |
| C5A |
C7A |
HC72 |
O1 |
119.6 |
120.0 |
| C5A |
C7A |
HC72 |
HC71 |
239.8 |
240.0 |
| O1 |
C7A |
HC72 |
HC71 |
120.2 |
120.0 |
| HC72 |
C7A |
O1 |
HO1 |
3.7 |
300.0 |
| HO1 |
O1 |
C7A |
HC71 |
123.4 |
59.9 |
| HO1 |
O1 |
C7A |
HC72 |
3.7 |
300.0 |