PDB Chemical Component HMD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HMD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
BR1	C1	1.851	1.891
O1	C5	1.238	1.216
O2	C10	1.241	1.214
N1	C1	1.335	1.340
N1	C4	1.351	1.298
N2	C5	1.383	1.340
N2	C6	1.473	1.407
N2	HN2	1.020	0.971
N3	C10	1.354	1.349
N3	C11	1.338	1.322
N4	C9	1.403	1.299
N4	C11	1.346	1.369
N5	C11	1.319	1.359
N5	HN51	1.020	0.970
N5	HN52	1.020	0.970
C1	C2	1.364	1.340
C2	C3	1.421	1.512
C2	H2	1.103	1.080
C3	C4	1.429	1.498
C3	C8	1.547	1.539
C3	H3	1.115	1.089
C4	C5	1.469	1.467
C6	C7	1.518	1.507
C6	H61	1.116	1.090
C6	H62	1.115	1.090
C7	C8	1.526	1.539
C7	H71	1.114	1.091
C7	H72	1.114	1.089
C8	C9	1.399	1.507
C8	H8	1.116	1.090
C9	C10	1.519	1.504

Bond Angles for HMD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
BR1	C1	N1	120.0	123.8
BR1	C1	C2	128.8	123.8
O1	C5	N2	121.7	120.7
O1	C5	C4	117.6	120.7
O2	C10	N3	124.8	127.3
O2	C10	C9	125.9	127.2
C1	N1	C4	109.0	113.0
N1	C1	C2	111.2	112.5
N1	C4	C3	108.0	106.5
N1	C4	C5	117.6	128.7
C5	N2	C6	128.4	123.8
C5	N2	HN2	112.1	118.1
N2	C5	C4	120.7	118.5
C6	N2	HN2	119.6	118.1
N2	C6	C7	113.4	124.8
N2	C6	H61	110.8	106.3
N2	C6	H62	110.8	106.3
C10	N3	C11	106.5	108.4
N3	C10	C9	109.3	105.5
N3	C11	N4	113.6	111.1
N3	C11	N5	124.9	124.5
C9	N4	C11	109.2	109.3
N4	C9	C8	127.7	127.1
N4	C9	C10	101.4	105.8
N4	C11	N5	121.5	124.5
C11	N5	HN51	125.0	120.0
C11	N5	HN52	106.8	119.9
HN51	N5	HN52	106.7	120.1
C1	C2	C3	106.3	104.5
C1	C2	H2	125.3	127.8
C3	C2	H2	128.4	127.7
C2	C3	C4	105.5	103.2
C2	C3	C8	128.4	110.8
C2	C3	H3	119.5	110.4
C4	C3	C8	125.9	111.1
C4	C3	H3	130.7	110.3
C3	C4	C5	134.5	124.8
C8	C3	H3	23.2	110.9
C3	C8	C7	119.0	109.7
C3	C8	C9	121.4	109.4
C3	C8	H8	76.6	109.4
C7	C6	H61	110.7	106.4
C7	C6	H62	110.8	106.3
C6	C7	C8	113.0	112.3
C6	C7	H71	110.9	108.8
C6	C7	H72	110.9	109.0
H61	C6	H62	99.5	105.4
C8	C7	H71	110.9	108.9
C8	C7	H72	110.9	108.9
C7	C8	C9	119.6	109.4
C7	C8	H8	153.5	109.4
H71	C7	H72	99.5	108.8
C9	C8	H8	50.2	109.4
C8	C9	C10	130.9	127.1

Torsion Angles for HMD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
BR1	C1	N1	C4	180.6	182.9
N1	C1	BR1	C2	179.6	180.1
BR1	C1	C2	C3	179.1	181.2
BR1	C1	C2	H2	359.1	1.2
N1	C4	C5	O1	22.2	61.4
O1	C5	N2	C6	179.9	193.2
O1	C5	N2	HN2	359.9	13.1
N2	C5	O1	C4	180.0	180.0
C3	C4	C5	O1	201.4	240.2
O2	C10	N3	C11	179.7	180.1
N3	C10	O2	C9	179.6	180.0
N4	C9	C10	O2	181.4	179.7
C8	C9	C10	O2	1.8	359.9
BR1	C1	N1	C2	180.3	179.9
C1	N1	C4	C3	0.1	354.4
C1	N1	C4	C5	179.5	173.4
N1	C1	C2	C3	359.4	1.1
N1	C1	C2	H2	179.4	181.1
O1	C5	C4	N1	22.2	61.4
C4	N1	C1	C2	0.3	3.0
N2	C5	C4	N1	202.2	241.4
C2	C3	C4	N1	359.6	5.8
N1	C4	C3	C8	174.6	124.5
N1	C4	C3	H3	203.7	247.9
C3	C4	N1	C5	180.7	181.1
O1	C5	N2	C4	180.0	180.0
N1	C4	C5	N2	202.2	241.4
C6	N2	C5	HN2	180.0	180.0
C5	N2	C6	C7	305.2	333.1
C5	N2	C6	H61	70.5	209.0
C5	N2	C6	H62	180.0	97.1
C3	C4	C5	N2	21.4	60.2
C5	N2	C6	HN2	180.0	180.0
C6	N2	C5	C4	359.9	13.2
C7	C6	N2	H61	234.7	124.1
C7	C6	N2	H62	125.3	236.0
N2	C6	C7	C8	84.0	319.9
N2	C6	C7	H71	209.2	199.3
N2	C6	C7	H72	318.7	80.7
H61	C6	N2	H62	250.5	111.9
C5	N2	HN2	C6	180.0	180.0
HN2	N2	C5	C4	179.9	193.2
HN2	N2	C6	C7	125.3	153.1
HN2	N2	C6	H61	250.5	29.0
HN2	N2	C6	H62	360.0	277.1
O2	C10	N3	C9	180.4	180.0
C10	N3	C11	N4	359.2	0.2
C10	N3	C11	N5	179.6	180.0
N4	C9	C10	N3	1.8	359.7
C8	C9	C10	N3	182.1	180.0
C11	N3	C10	C9	359.4	0.0
C9	N4	C11	N3	2.1	359.6
N4	C11	N3	N5	179.6	180.2
N3	C11	N5	HN51	180.0	359.9
N3	C11	N5	HN52	54.7	179.7
O2	C10	C9	N4	181.4	179.7
N3	C10	C9	N4	1.8	359.7
N3	C11	N4	C9	2.1	359.6
C9	N4	C11	N5	181.7	179.7
C3	C8	C9	N4	0.2	114.9
C7	C8	C9	N4	180.8	354.7
N4	C9	C8	H8	30.7	234.8
C8	C9	N4	C10	179.6	179.7
N3	C11	N4	N5	180.4	179.8
C11	N4	C9	C8	177.4	180.2
C11	N4	C9	C10	357.8	0.4
N4	C11	N5	HN51	0.5	179.7
N4	C11	N5	HN52	235.1	359.5
N3	C11	N5	N4	179.6	180.2
HN51	N5	C11	HN52	125.3	180.2
C11	N5	HN51	HN52	234.6	179.8
C11	N5	HN52	HN51	135.7	180.2
BR1	C1	C2	N1	179.7	180.1
C2	C1	N1	C4	0.3	3.0
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	C4	0.6	355.9
C1	C2	C3	C8	185.7	237.0
C1	C2	C3	H3	159.7	113.8
N1	C4	C3	C2	359.6	5.8
C1	C2	C3	H2	180.0	180.0
C4	C3	C2	C8	174.9	118.9
C4	C3	C2	H3	200.9	242.1
C2	C3	C4	C5	180.4	186.8
C8	C3	C2	H3	26.0	123.2
C2	C3	C8	C7	184.2	83.4
C2	C3	C8	C9	4.8	323.3
C2	C3	C8	H8	341.1	203.5
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	180.6	175.9
H2	C2	C3	C8	5.7	57.0
H2	C2	C3	H3	339.7	293.8
O1	C5	C4	C3	201.4	240.2
N1	C4	C3	C5	179.2	179.0
N2	C5	C4	C3	21.4	60.2
C4	C3	C2	H2	180.6	175.9
C2	C3	C4	C8	185.0	241.3
C2	C3	C4	H3	155.9	117.9
C8	C3	C4	H3	330.9	236.7
C4	C3	C8	C7	10.3	329.3
C4	C3	C8	C9	190.9	209.3
C4	C3	C8	H8	167.2	89.4
N4	C9	C8	C3	0.2	114.9
C8	C3	C2	H2	5.7	57.0
C2	C3	C8	C4	173.9	114.1
C2	C3	C8	H3	284.7	237.1
C4	C3	C8	H3	110.8	123.0
C8	C3	C4	C5	355.4	305.5
C6	C7	C8	C3	306.5	82.9
C3	C8	C7	H71	181.3	203.6
C3	C8	C7	H72	71.8	322.1
C7	C8	C3	C9	179.4	120.1
C7	C8	C3	H8	203.1	239.9
C9	C8	C3	H8	23.7	119.9
C3	C8	C9	C10	179.7	294.6
H3	C3	C2	H2	339.7	293.8
C2	C3	H3	C4	206.9	246.6
C2	C3	H3	C8	119.4	123.1
C4	C3	H3	C8	272.5	236.6
H3	C3	C4	C5	24.5	68.9
H3	C3	C8	C7	259.5	206.3
H3	C3	C8	C9	80.1	86.3
H3	C3	C8	H8	56.4	326.4
O1	C5	C4	N2	180.0	180.0
N1	C4	C5	C3	180.9	181.2
C4	C5	N2	C6	359.9	13.2
C4	C5	N2	HN2	179.9	193.2
C5	C4	C3	C8	355.4	305.5
C5	C4	C3	H3	24.5	68.9
C7	C6	N2	HN2	125.3	153.1
N2	C6	C7	H61	125.3	236.0
N2	C6	C7	H62	234.7	124.0
C3	C8	C7	C6	306.5	82.9
H61	C6	C7	H62	109.5	248.0
C8	C7	C6	H71	234.8	120.7
C8	C7	C6	H72	125.3	239.2
C6	C7	C8	C9	125.9	203.0
C6	C7	C8	H8	185.4	322.9
H71	C7	C6	H72	250.5	118.5
H61	C6	N2	HN2	250.5	29.0
N2	C6	H61	C7	233.3	134.9
N2	C6	H61	H62	116.6	247.5
C7	C6	H61	H62	243.4	112.6
H61	C6	C7	C8	318.7	84.0
H61	C6	C7	H71	83.9	323.3
H61	C6	C7	H72	193.4	204.8
H62	C6	N2	HN2	360.0	277.1
N2	C6	H62	C7	126.8	225.2
N2	C6	H62	H61	243.4	112.5
C7	C6	H62	H61	116.6	247.3
H62	C6	C7	C8	209.2	195.9
H62	C6	C7	H71	334.5	75.3
H62	C6	C7	H72	84.0	316.7
N4	C9	C8	C7	180.8	354.7
C7	C8	C3	H3	259.5	206.3
C3	C8	C7	C9	180.6	240.0
C3	C8	C7	H8	121.2	120.1
C8	C7	C6	H61	318.7	84.0
C8	C7	C6	H62	209.2	195.9
C6	C7	C8	H71	125.2	239.4
C6	C7	C8	H72	234.7	120.8
H71	C7	C8	H72	109.5	241.4
C9	C8	C7	H8	300.6	240.1
C7	C8	C9	C10	0.3	174.4
H71	C7	C6	H61	83.9	323.3
H71	C7	C6	H62	334.5	75.3
C6	C7	H71	C8	233.6	122.8
C6	C7	H71	H72	116.8	241.4
C8	C7	H71	H72	243.2	118.6
H71	C7	C8	C9	0.7	323.6
H71	C7	C8	H8	60.1	83.5
H72	C7	C6	H61	193.4	204.8
H72	C7	C6	H62	84.0	316.7
C6	C7	H72	C8	126.5	237.1
C6	C7	H72	H71	243.2	118.5
C8	C7	H72	H71	116.7	241.4
H72	C7	C8	C9	251.2	82.2
H72	C7	C8	H8	310.6	202.1
O2	C10	C9	C8	1.8	359.9
N3	C10	C9	C8	182.1	180.0
C8	C9	N4	C11	177.4	180.2
N4	C9	C8	C10	180.5	180.3
C9	C8	C3	H3	80.1	86.3
C3	C8	C9	C7	179.4	120.2
C3	C8	C9	H8	329.5	240.1
C9	C8	C7	H71	0.7	323.6
C9	C8	C7	H72	251.2	82.2
C7	C8	C9	H8	150.1	119.9
H8	C8	C3	H3	56.4	326.4
C3	C8	H8	C7	230.3	239.8
C3	C8	H8	C9	153.5	119.9
H8	C8	C7	H71	60.1	83.5
H8	C8	C7	H72	310.6	202.1
C7	C8	H8	C9	283.2	240.1
H8	C8	C9	C10	210.2	54.5
O2	C10	C9	N3	179.6	180.0
C9	C10	N3	C11	359.4	0.0
C10	C9	N4	C11	357.8	0.4
N4	C9	C10	C8	179.6	179.7
C10	C9	C8	H8	210.2	54.5