PDB Chemical Component HMC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HMC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.517	1.428
C1	C2	1.518	1.530
C1	C6	1.533	1.500
C1	H1	1.115	1.091
O1	HO1	0.950	0.967
C2	O2	1.392	1.429
C2	C3	1.565	1.533
C2	H2	1.115	1.089
O2	HO2	0.949	0.967
C3	O3	1.407	1.429
C3	C4	1.557	1.530
C3	H3	1.116	1.090
O3	HO3	0.950	0.967
C4	O4	1.408	1.429
C4	C5	1.570	1.501
C4	H4	1.114	1.089
O4	HO4	0.950	0.967
C5	C6	1.383	1.294
C5	C7	1.470	1.507
C6	H6	1.103	1.080
C7	O7	1.443	1.428
C7	H71	1.116	1.090
C7	H72	1.116	1.089
O7	HO7	0.950	0.967

Bond Angles for HMC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	111.7	109.3
O1	C1	C6	119.0	109.4
O1	C1	H1	98.8	109.3
C1	O1	HO1	111.8	106.9
C2	C1	C6	101.8	110.1
C2	C1	H1	117.0	109.4
C1	C2	O2	110.9	109.6
C1	C2	C3	108.1	108.4
C1	C2	H2	109.1	109.7
C6	C1	H1	109.3	109.3
C1	C6	C5	128.9	124.1
C1	C6	H6	121.7	118.0
O2	C2	C3	108.6	109.9
O2	C2	H2	108.7	109.6
C2	O2	HO2	110.9	106.9
C3	C2	H2	111.4	109.7
C2	C3	O3	109.0	109.7
C2	C3	C4	112.1	108.3
C2	C3	H3	107.4	109.6
O3	C3	C4	107.5	109.8
O3	C3	H3	112.0	109.6
C3	O3	HO3	109.0	106.8
C4	C3	H3	108.8	109.9
C3	C4	O4	112.3	109.4
C3	C4	C5	116.2	110.1
C3	C4	H4	102.3	109.4
O4	C4	C5	109.2	109.0
O4	C4	H4	110.4	109.3
C4	O4	HO4	112.3	106.8
C5	C4	H4	105.9	109.7
C4	C5	C6	112.7	124.0
C4	C5	C7	120.3	118.0
C6	C5	C7	120.0	118.0
C5	C6	H6	109.4	117.9
C5	C7	O7	111.3	109.5
C5	C7	H71	111.5	109.5
C5	C7	H72	111.5	109.5
O7	C7	H71	111.5	109.4
O7	C7	H72	111.5	109.5
C7	O7	HO7	111.3	106.9
H71	C7	H72	98.8	109.5

Torsion Angles for HMC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	C6	118.1	120.6
C2	C1	O1	H1	236.1	240.3
O1	C1	C2	O2	55.5	49.2
O1	C1	C2	C3	296.5	289.3
O1	C1	C2	H2	175.2	169.6
C6	C1	O1	H1	118.0	119.7
O1	C1	C6	C5	71.2	103.0
O1	C1	C6	H6	251.2	283.0
O1	C1	C2	C6	232.0	239.8
O1	C1	C2	H1	112.9	119.7
C2	C1	O1	HO1	180.0	180.6
C6	C1	C2	H1	240.9	239.8
C2	C1	C6	C5	308.0	342.9
C2	C1	C6	H6	128.0	162.9
O2	C2	C1	C3	119.0	119.9
O2	C2	C1	H2	240.3	239.6
C1	C2	O2	HO2	180.0	60.0
C3	C2	C1	H2	121.3	119.7
C1	C2	C3	O3	178.8	172.6
C1	C2	C3	C4	297.7	292.4
C1	C2	C3	H3	57.2	52.3
O1	C1	C6	C2	123.2	120.1
O1	C1	C6	H1	247.6	240.3
C6	C1	O1	HO1	61.8	60.0
C2	C1	C6	H1	124.4	120.2
C6	C1	C2	O2	183.5	169.4
C6	C1	C2	C3	64.5	49.4
C6	C1	C2	H2	303.2	289.7
C4	C5	C6	C1	25.4	0.7
C1	C6	C5	C7	176.0	180.5
C5	C6	C1	H6	180.0	180.0
O1	C1	H1	C2	240.0	240.4
O1	C1	H1	C6	125.1	119.7
H1	C1	O1	HO1	303.8	300.3
C2	C1	H1	C6	245.1	239.3
H1	C1	C2	O2	302.6	289.5
H1	C1	C2	C3	183.6	169.6
H1	C1	C2	H2	62.3	49.9
H1	C1	C6	C5	183.6	222.7
H1	C1	C6	H6	3.6	42.7
HO1	O1	C1	C2	180.0	180.6
HO1	O1	C1	C6	61.8	60.0
HO1	O1	C1	H1	303.8	300.3
O2	C2	C1	C6	183.5	169.4
O2	C2	C1	H1	302.6	289.5
C1	C2	O2	C3	241.4	241.0
C1	C2	O2	H2	120.0	120.4
C3	C2	O2	H2	238.6	239.4
O2	C2	C3	O3	58.3	52.9
O2	C2	C3	C4	177.3	172.6
O2	C2	C3	H3	296.8	292.5
C3	C2	C1	C6	64.5	49.4
C3	C2	C1	H1	183.6	169.6
C1	C2	C3	O2	120.4	119.7
C1	C2	C3	H2	240.1	240.3
O2	C2	C3	H2	119.7	120.5
C3	C2	O2	HO2	298.7	179.0
O3	C3	C2	C4	241.0	240.2
O3	C3	C2	H3	121.6	120.3
C2	C3	O3	HO3	180.0	180.0
C4	C3	C2	H3	240.5	240.1
C2	C3	C4	O4	160.0	169.5
C2	C3	C4	C5	33.3	49.8
C2	C3	C4	H4	278.4	289.2
H2	C2	C1	C6	303.2	289.7
H2	C2	C1	H1	62.3	49.9
C1	C2	H2	O2	238.9	239.6
C1	C2	H2	C3	119.3	119.0
O2	C2	H2	C3	240.3	239.3
H2	C2	O2	HO2	60.1	299.6
H2	C2	C3	O3	298.7	292.3
H2	C2	C3	C4	57.6	52.1
H2	C2	C3	H3	177.1	172.0
HO2	O2	C2	C3	298.7	179.0
HO2	O2	C2	H2	60.1	299.6
O3	C3	C2	H2	298.7	292.3
C2	C3	O3	C4	121.8	118.9
C2	C3	O3	H3	241.3	239.6
C4	C3	O3	H3	119.5	120.7
O3	C3	C4	O4	279.9	289.2
O3	C3	C4	C5	153.1	169.5
O3	C3	C4	H4	38.3	48.9
C4	C3	C2	H2	57.6	52.1
C2	C3	C4	O3	240.2	240.3
C2	C3	C4	H3	118.6	119.7
O3	C3	C4	H3	238.4	239.4
C4	C3	O3	HO3	58.2	61.1
O4	C4	C3	C5	126.7	119.8
O4	C4	C3	H4	241.6	240.3
C3	C4	O4	HO4	180.0	180.0
C5	C4	C3	H4	114.9	120.6
C3	C4	C5	C6	346.5	342.5
C3	C4	C5	C7	195.9	162.7
H3	C3	C2	H2	177.1	172.0
C2	C3	H3	O3	119.7	120.4
C2	C3	H3	C4	238.4	241.1
O3	C3	H3	C4	118.8	120.7
H3	C3	O3	HO3	298.7	300.4
H3	C3	C4	O4	41.4	49.8
H3	C3	C4	C5	274.7	290.1
H3	C3	C4	H4	159.8	169.5
HO3	O3	C3	C4	58.2	61.1
HO3	O3	C3	H3	298.7	300.4
O4	C4	C3	H3	41.4	49.8
C3	C4	O4	C5	229.6	239.6
C3	C4	O4	H4	113.5	119.7
C5	C4	O4	H4	243.9	240.2
O4	C4	C5	C6	218.2	222.5
O4	C4	C5	C7	67.6	42.7
C1	C6	C5	C4	25.4	0.7
C5	C4	C3	H3	274.7	290.1
C3	C4	C5	O4	128.3	120.0
C3	C4	C5	H4	247.2	239.6
O4	C4	C5	H4	118.9	119.6
C5	C4	O4	HO4	310.5	300.4
C6	C5	C4	C7	150.5	179.8
C4	C5	C6	H6	205.4	180.7
C4	C5	C7	O7	78.6	179.7
C4	C5	C7	H71	203.9	59.8
C4	C5	C7	H72	313.3	299.7
H4	C4	C3	H3	159.8	169.5
C3	C4	H4	O4	240.3	240.3
C3	C4	H4	C5	122.2	120.8
O4	C4	H4	C5	241.9	240.5
H4	C4	O4	HO4	66.5	60.3
H4	C4	C5	C6	99.3	102.9
H4	C4	C5	C7	308.8	283.1
HO4	O4	C4	C5	310.5	300.4
HO4	O4	C4	H4	66.5	60.3
C5	C6	C1	H1	183.6	222.7
C1	C6	C5	H6	180.0	180.0
C6	C5	C4	H4	99.3	102.9
C4	C5	C6	C7	209.4	180.2
C6	C5	C7	O7	290.2	359.9
C6	C5	C7	H71	55.5	240.0
C6	C5	C7	H72	164.9	119.9
C7	C5	C4	H4	308.8	283.1
C4	C5	C7	C6	148.4	179.8
C7	C5	C6	H6	356.0	0.5
O7	C7	C5	H71	234.7	119.9
O7	C7	C5	H72	125.3	240.0
C5	C7	O7	HO7	180.0	180.0
H71	C7	C5	H72	250.6	120.1
H6	C6	C1	H1	3.6	42.7
C1	C6	H6	C5	180.0	180.0
H6	C6	C5	C7	356.0	0.5
C5	C7	O7	H71	125.3	240.0
C5	C7	O7	H72	234.7	120.0
H71	C7	O7	H72	109.4	240.0
C5	C7	H71	O7	234.8	120.0
C5	C7	H71	H72	117.4	239.9
O7	C7	H71	H72	242.6	120.0
H71	C7	O7	HO7	54.7	299.9
C5	C7	H72	O7	125.2	240.0
C5	C7	H72	H71	242.6	120.0
O7	C7	H72	H71	117.4	240.1
H72	C7	O7	HO7	305.3	59.9
HO7	O7	C7	H71	54.7	299.9
HO7	O7	C7	H72	305.3	59.9