PDB Chemical Component HLX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HLX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.223 |
1.208 |
| C |
CA |
1.495 |
1.507 |
| CA |
CB |
1.469 |
1.529 |
| CA |
N |
1.469 |
1.470 |
| CB |
CG |
1.454 |
1.530 |
| CG |
C7 |
1.520 |
1.530 |
| C7 |
C9 |
1.504 |
1.530 |
| C7 |
C8 |
1.509 |
1.530 |
| C |
OXT |
1.322 |
1.343 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
H5 |
1.100 |
1.091 |
| CB |
H6 |
1.100 |
1.090 |
| CG |
H7 |
1.100 |
1.090 |
| CG |
H8 |
1.100 |
1.090 |
| C7 |
H9 |
1.100 |
1.090 |
| C8 |
H10 |
1.100 |
1.090 |
| C8 |
H11 |
1.100 |
1.090 |
| C8 |
H12 |
1.100 |
1.090 |
| C9 |
H13 |
1.100 |
1.090 |
| C9 |
H14 |
1.100 |
1.089 |
| C9 |
H15 |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for HLX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
123.5 |
120.0 |
| C |
CA |
CB |
112.9 |
109.5 |
| C |
CA |
HA |
107.6 |
109.5 |
| CA |
CB |
CG |
110.5 |
109.5 |
| CB |
CA |
HA |
107.9 |
109.5 |
| CA |
CB |
H5 |
109.2 |
109.5 |
| CA |
CB |
H6 |
109.2 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
110.9 |
| CB |
CG |
C7 |
108.3 |
109.4 |
| CG |
CB |
H5 |
109.2 |
109.5 |
| CG |
CB |
H6 |
109.2 |
109.5 |
| CB |
CG |
H7 |
109.7 |
109.5 |
| CB |
CG |
H8 |
109.8 |
109.4 |
| CG |
C7 |
C9 |
114.9 |
109.4 |
| CG |
C7 |
C8 |
112.4 |
109.5 |
| C7 |
CG |
H7 |
109.8 |
109.5 |
| C7 |
CG |
H8 |
109.8 |
109.5 |
| CG |
C7 |
H9 |
109.9 |
109.5 |
| C8 |
C7 |
C9 |
99.1 |
109.5 |
| C9 |
C7 |
H9 |
110.1 |
109.5 |
| C7 |
C9 |
H13 |
109.5 |
109.5 |
| C7 |
C9 |
H14 |
109.5 |
109.5 |
| C7 |
C9 |
H15 |
109.5 |
109.5 |
| C8 |
C7 |
H9 |
110.0 |
109.5 |
| C7 |
C8 |
H10 |
109.5 |
109.5 |
| C7 |
C8 |
H11 |
109.5 |
109.4 |
| C7 |
C8 |
H12 |
109.5 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
111.1 |
| H5 |
CB |
H6 |
109.5 |
109.4 |
| H7 |
CG |
H8 |
109.5 |
109.5 |
| H10 |
C8 |
H11 |
109.4 |
109.4 |
| H10 |
C8 |
H12 |
109.5 |
109.5 |
| H11 |
C8 |
H12 |
109.5 |
109.5 |
| H13 |
C9 |
H14 |
109.5 |
109.5 |
| H13 |
C9 |
H15 |
109.4 |
109.5 |
| H14 |
C9 |
H15 |
109.5 |
109.4 |
Torsion Angles for HLX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
CB |
106.1 |
100.0 |
| O |
C |
CA |
HA |
225.0 |
220.1 |
| O |
C |
OXT |
HXT |
360.0 |
359.9 |
| C |
CA |
CB |
CG |
299.2 |
175.0 |
| CB |
CA |
C |
HA |
241.1 |
239.9 |
| C |
CA |
CB |
H5 |
59.3 |
295.0 |
| C |
CA |
CB |
H6 |
179.1 |
55.0 |
| C |
CA |
N |
H |
180.0 |
296.0 |
| C |
CA |
N |
H2 |
300.0 |
60.0 |
| C |
CA |
CB |
HA |
118.7 |
120.1 |
| CB |
CA |
N |
H |
54.7 |
176.0 |
| CB |
CA |
N |
H2 |
174.8 |
300.0 |
| CA |
CB |
CG |
C7 |
181.0 |
180.0 |
| CG |
CB |
CA |
H5 |
239.9 |
240.0 |
| CG |
CB |
CA |
H6 |
120.1 |
120.0 |
| CA |
CB |
CG |
H7 |
300.8 |
300.0 |
| CA |
CB |
CG |
H8 |
61.2 |
60.0 |
| H5 |
CB |
CA |
H6 |
240.2 |
240.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CG |
CB |
CA |
HA |
180.5 |
54.9 |
| CA |
CB |
CG |
H5 |
120.1 |
120.0 |
| CA |
CB |
CG |
H6 |
239.9 |
240.0 |
| CB |
CG |
C7 |
C9 |
48.3 |
185.0 |
| CB |
CG |
C7 |
C8 |
160.6 |
65.0 |
| C7 |
CG |
CB |
H7 |
240.2 |
240.0 |
| C7 |
CG |
CB |
H8 |
119.8 |
120.0 |
| CB |
CG |
C7 |
H9 |
283.5 |
305.0 |
| H5 |
CB |
CG |
H6 |
119.7 |
120.0 |
| H7 |
CG |
CB |
H8 |
239.7 |
240.0 |
| C7 |
CG |
CB |
H5 |
60.8 |
60.0 |
| C7 |
CG |
CB |
H6 |
301.1 |
300.0 |
| CB |
CG |
C7 |
H7 |
119.8 |
120.0 |
| CB |
CG |
C7 |
H8 |
240.2 |
240.1 |
| C8 |
C7 |
CG |
C9 |
112.3 |
240.0 |
| C9 |
C7 |
CG |
H9 |
124.8 |
240.0 |
| CG |
C7 |
C9 |
H13 |
180.0 |
60.0 |
| CG |
C7 |
C9 |
H14 |
300.0 |
180.0 |
| CG |
C7 |
C9 |
H15 |
60.0 |
300.0 |
| C8 |
C7 |
CG |
H9 |
237.1 |
120.0 |
| CG |
C7 |
C8 |
H10 |
180.0 |
180.0 |
| CG |
C7 |
C8 |
H11 |
300.0 |
299.9 |
| CG |
C7 |
C8 |
H12 |
60.0 |
60.0 |
| H7 |
CG |
C7 |
H8 |
120.4 |
120.1 |
| CG |
C7 |
C9 |
C8 |
120.0 |
240.0 |
| C9 |
C7 |
CG |
H7 |
288.5 |
65.0 |
| C9 |
C7 |
CG |
H8 |
168.1 |
305.0 |
| CG |
C7 |
C9 |
H9 |
235.3 |
120.0 |
| C8 |
C7 |
C9 |
H9 |
115.3 |
240.0 |
| C9 |
C7 |
C8 |
H10 |
301.8 |
60.0 |
| C9 |
C7 |
C8 |
H11 |
61.8 |
179.9 |
| C9 |
C7 |
C8 |
H12 |
181.8 |
300.0 |
| H13 |
C9 |
C7 |
H14 |
240.0 |
240.0 |
| H13 |
C9 |
C7 |
H15 |
120.0 |
120.0 |
| H14 |
C9 |
C7 |
H15 |
240.0 |
240.0 |
| CG |
C7 |
C8 |
C9 |
238.2 |
120.0 |
| C8 |
C7 |
CG |
H7 |
40.8 |
305.0 |
| C8 |
C7 |
CG |
H8 |
280.5 |
185.0 |
| CG |
C7 |
C8 |
H9 |
122.8 |
240.0 |
| C9 |
C7 |
C8 |
H9 |
244.7 |
120.0 |
| C8 |
C7 |
C9 |
H13 |
59.9 |
180.0 |
| C8 |
C7 |
C9 |
H14 |
180.0 |
300.0 |
| C8 |
C7 |
C9 |
H15 |
300.0 |
60.0 |
| H10 |
C8 |
C7 |
H11 |
240.0 |
240.1 |
| H10 |
C8 |
C7 |
H12 |
120.0 |
120.0 |
| H11 |
C8 |
C7 |
H12 |
240.0 |
239.9 |
| OXT |
C |
CA |
CB |
285.2 |
279.9 |
| OXT |
C |
CA |
HA |
44.1 |
40.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| C |
CA |
HA |
CB |
237.9 |
239.9 |
| HA |
CA |
CB |
CG |
180.5 |
54.9 |
| HA |
CA |
CB |
H5 |
300.6 |
175.0 |
| HA |
CA |
CB |
H6 |
60.4 |
294.9 |
| HA |
CA |
N |
H |
297.2 |
56.0 |
| HA |
CA |
N |
H2 |
57.3 |
180.0 |
| CA |
CB |
H5 |
CG |
239.1 |
240.0 |
| H5 |
CB |
CA |
HA |
300.6 |
175.0 |
| CA |
CB |
H5 |
H6 |
119.6 |
120.0 |
| H5 |
CB |
CG |
C7 |
60.8 |
60.0 |
| CG |
CB |
H5 |
H6 |
240.5 |
240.0 |
| H5 |
CB |
CG |
H7 |
180.7 |
180.0 |
| H5 |
CB |
CG |
H8 |
301.0 |
300.0 |
| CA |
CB |
H6 |
CG |
120.9 |
120.0 |
| H6 |
CB |
CA |
HA |
60.4 |
294.9 |
| CA |
CB |
H6 |
H5 |
240.4 |
240.0 |
| H6 |
CB |
CG |
C7 |
301.1 |
300.0 |
| CG |
CB |
H6 |
H5 |
119.5 |
120.0 |
| H6 |
CB |
CG |
H7 |
60.9 |
60.0 |
| H6 |
CB |
CG |
H8 |
181.3 |
180.0 |
| CB |
CG |
H7 |
C7 |
241.1 |
240.0 |
| H7 |
CG |
CB |
H5 |
180.7 |
180.0 |
| H7 |
CG |
CB |
H6 |
60.9 |
60.0 |
| CB |
CG |
H7 |
H8 |
120.5 |
120.0 |
| H7 |
CG |
C7 |
C9 |
288.5 |
65.0 |
| H7 |
CG |
C7 |
C8 |
40.8 |
305.0 |
| C7 |
CG |
H7 |
H8 |
239.5 |
240.0 |
| H7 |
CG |
C7 |
H9 |
163.7 |
185.0 |
| CB |
CG |
H8 |
C7 |
119.0 |
119.9 |
| H8 |
CG |
CB |
H5 |
301.0 |
300.0 |
| H8 |
CG |
CB |
H6 |
181.3 |
180.0 |
| CB |
CG |
H8 |
H7 |
239.5 |
240.0 |
| H8 |
CG |
C7 |
C9 |
168.1 |
305.0 |
| H8 |
CG |
C7 |
C8 |
280.5 |
185.0 |
| C7 |
CG |
H8 |
H7 |
120.6 |
120.1 |
| H8 |
CG |
C7 |
H9 |
43.4 |
64.9 |
| CG |
C7 |
H9 |
C9 |
127.5 |
240.0 |
| CG |
C7 |
H9 |
C8 |
235.7 |
120.0 |
| H9 |
C7 |
CG |
H7 |
163.7 |
185.0 |
| H9 |
C7 |
CG |
H8 |
43.4 |
64.9 |
| C8 |
C7 |
H9 |
C9 |
251.8 |
120.0 |
| H9 |
C7 |
C9 |
H13 |
304.7 |
300.0 |
| H9 |
C7 |
C9 |
H14 |
64.7 |
60.0 |
| H9 |
C7 |
C9 |
H15 |
184.7 |
180.0 |
| H9 |
C7 |
C8 |
H10 |
57.2 |
300.0 |
| H9 |
C7 |
C8 |
H11 |
177.2 |
59.9 |
| H9 |
C7 |
C8 |
H12 |
297.2 |
180.0 |
| H10 |
C8 |
C7 |
C9 |
301.8 |
60.0 |
| H10 |
C8 |
C7 |
H9 |
57.2 |
300.0 |
| C7 |
C8 |
H10 |
H11 |
120.0 |
119.9 |
| C7 |
C8 |
H10 |
H12 |
240.0 |
240.0 |
| H11 |
C8 |
H10 |
H12 |
120.0 |
120.0 |
| H11 |
C8 |
C7 |
C9 |
61.8 |
179.9 |
| H11 |
C8 |
C7 |
H9 |
177.2 |
59.9 |
| C7 |
C8 |
H11 |
H10 |
240.0 |
240.1 |
| C7 |
C8 |
H11 |
H12 |
120.0 |
120.0 |
| H10 |
C8 |
H11 |
H12 |
240.0 |
240.0 |
| H12 |
C8 |
C7 |
C9 |
181.8 |
300.0 |
| H12 |
C8 |
C7 |
H9 |
297.2 |
180.0 |
| C7 |
C8 |
H12 |
H10 |
120.0 |
120.0 |
| C7 |
C8 |
H12 |
H11 |
240.0 |
240.0 |
| H10 |
C8 |
H12 |
H11 |
120.0 |
120.0 |
| H13 |
C9 |
C7 |
H9 |
304.7 |
300.0 |
| C7 |
C9 |
H13 |
H14 |
120.0 |
120.0 |
| C7 |
C9 |
H13 |
H15 |
240.0 |
240.0 |
| H14 |
C9 |
H13 |
H15 |
120.0 |
120.0 |
| H14 |
C9 |
C7 |
H9 |
64.7 |
60.0 |
| C7 |
C9 |
H14 |
H13 |
240.0 |
240.0 |
| C7 |
C9 |
H14 |
H15 |
120.0 |
120.0 |
| H13 |
C9 |
H14 |
H15 |
240.0 |
240.0 |
| H15 |
C9 |
C7 |
H9 |
184.7 |
180.0 |
| C7 |
C9 |
H15 |
H13 |
120.0 |
120.0 |
| C7 |
C9 |
H15 |
H14 |
240.0 |
240.0 |
| H13 |
C9 |
H15 |
H14 |
120.0 |
120.0 |