PDB Chemical Component HLI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HLI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C8 |
C1 |
1.521 |
1.530 |
| C1 |
O5 |
1.429 |
1.429 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C3 |
N1 |
1.316 |
1.341 |
| N1 |
C4 |
1.323 |
1.315 |
| C6 |
O1 |
1.230 |
1.220 |
| O3 |
P1 |
1.577 |
1.479 |
| C11 |
P1 |
1.761 |
1.814 |
| P1 |
O2 |
1.482 |
1.610 |
| P1 |
O4 |
1.638 |
1.610 |
| C18 |
CL1 |
1.744 |
1.736 |
| C3 |
C2 |
1.379 |
1.400 |
| C6 |
C2 |
1.374 |
1.405 |
| C2 |
N2 |
1.322 |
1.381 |
| C4 |
N2 |
1.334 |
1.363 |
| N2 |
C8 |
1.484 |
1.465 |
| O2 |
HO2 |
0.950 |
0.968 |
| N4 |
C3 |
1.337 |
1.349 |
| C5 |
N3 |
1.420 |
1.364 |
| N3 |
C6 |
1.406 |
1.352 |
| N3 |
HN3 |
1.000 |
0.970 |
| C4 |
C7 |
1.383 |
1.479 |
| C5 |
N4 |
1.353 |
1.312 |
| O4 |
HO4 |
0.950 |
0.967 |
| N5 |
C5 |
1.352 |
1.373 |
| C14 |
N5 |
1.484 |
1.465 |
| O5 |
C15 |
1.366 |
1.359 |
| C13 |
C7 |
1.405 |
1.395 |
| C7 |
C9 |
1.397 |
1.395 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.091 |
| C9 |
C10 |
1.398 |
1.380 |
| C9 |
H9 |
1.080 |
1.080 |
| C11 |
C10 |
1.392 |
1.383 |
| C10 |
H10 |
1.080 |
1.080 |
| C12 |
C11 |
1.393 |
1.383 |
| C13 |
C12 |
1.395 |
1.380 |
| C12 |
H12 |
1.080 |
1.081 |
| C13 |
H13 |
1.080 |
1.079 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.091 |
| C15 |
C16 |
1.397 |
1.388 |
| C15 |
C20 |
1.397 |
1.388 |
| C16 |
C17 |
1.397 |
1.382 |
| C16 |
H16 |
1.080 |
1.079 |
| C17 |
C18 |
1.400 |
1.383 |
| C17 |
H17 |
1.080 |
1.080 |
| C19 |
C18 |
1.398 |
1.384 |
| C20 |
C19 |
1.396 |
1.382 |
| C19 |
H19 |
1.080 |
1.080 |
| C20 |
H20 |
1.080 |
1.080 |
| C14 |
H14B |
1.100 |
1.089 |
| N5 |
HN5 |
1.000 |
0.970 |
Bond Angles for HLI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C1 |
H1 |
110.0 |
109.4 |
| C8 |
C1 |
H1A |
110.0 |
109.5 |
| O5 |
C1 |
H1 |
110.0 |
109.4 |
| O5 |
C1 |
H1A |
110.0 |
109.5 |
| C1 |
O5 |
C15 |
114.4 |
117.0 |
| H1 |
C1 |
H1A |
109.5 |
109.5 |
| C3 |
N1 |
C4 |
109.8 |
109.9 |
| N1 |
C4 |
N2 |
107.8 |
109.6 |
| N1 |
C4 |
C7 |
123.0 |
125.2 |
| O3 |
P1 |
O4 |
105.1 |
109.5 |
| O2 |
P1 |
O4 |
111.4 |
109.5 |
| P1 |
O2 |
HO2 |
109.5 |
114.0 |
| P1 |
O4 |
HO4 |
109.5 |
114.0 |
| C2 |
N2 |
C8 |
124.1 |
126.5 |
| C4 |
N2 |
C8 |
127.3 |
126.6 |
| N2 |
C8 |
H8 |
109.0 |
109.5 |
| N2 |
C8 |
H8A |
109.0 |
109.5 |
| C5 |
N3 |
C6 |
119.8 |
120.2 |
| C5 |
N3 |
HN3 |
120.1 |
119.9 |
| C6 |
N3 |
HN3 |
120.1 |
119.9 |
| C4 |
C7 |
C9 |
119.3 |
120.1 |
| C14 |
N5 |
HN5 |
120.0 |
120.1 |
| O5 |
C15 |
C16 |
121.7 |
120.1 |
| O5 |
C15 |
C20 |
118.9 |
120.0 |
| C7 |
C9 |
C10 |
119.4 |
119.8 |
| C7 |
C9 |
H9 |
120.3 |
120.1 |
| H8 |
C8 |
H8A |
109.4 |
109.5 |
| C10 |
C9 |
H9 |
120.3 |
120.1 |
| C9 |
C10 |
H10 |
120.4 |
119.9 |
| C11 |
C10 |
H10 |
120.4 |
120.0 |
| C13 |
C12 |
H12 |
120.9 |
119.9 |
| H14 |
C14 |
H14A |
109.5 |
109.4 |
| H14 |
C14 |
H14B |
109.5 |
109.5 |
| H14A |
C14 |
H14B |
109.5 |
109.5 |
| C16 |
C15 |
C20 |
119.3 |
119.9 |
| C15 |
C16 |
C17 |
120.4 |
119.9 |
| C15 |
C16 |
H16 |
119.8 |
120.0 |
| C15 |
C20 |
C19 |
120.2 |
119.9 |
| C15 |
C20 |
H20 |
119.9 |
120.0 |
| C17 |
C16 |
H16 |
119.8 |
120.1 |
| C16 |
C17 |
C18 |
120.5 |
120.1 |
| C16 |
C17 |
H17 |
119.8 |
119.9 |
| C18 |
C17 |
H17 |
119.8 |
120.0 |
| C20 |
C19 |
H19 |
119.7 |
120.0 |
Torsion Angles for HLI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5 |
C1 |
C8 |
H1 |
240.3 |
120.0 |
| O5 |
C1 |
C8 |
H1A |
119.6 |
240.0 |
| C8 |
C1 |
O5 |
C15 |
183.9 |
180.0 |
| H1 |
C1 |
C8 |
H1A |
239.3 |
120.0 |
| C8 |
C1 |
O5 |
H1 |
119.7 |
240.0 |
| C8 |
C1 |
O5 |
H1A |
240.4 |
120.0 |
| H1 |
C1 |
O5 |
H1A |
120.7 |
240.0 |
| C1 |
O5 |
C15 |
C16 |
346.4 |
180.0 |
| C1 |
O5 |
C15 |
C20 |
167.1 |
359.7 |
| C8 |
C1 |
H1 |
H1A |
121.0 |
240.0 |
| O5 |
C1 |
H1 |
H1A |
239.0 |
120.0 |
| H1 |
C1 |
O5 |
C15 |
64.3 |
300.0 |
| C8 |
C1 |
H1A |
H1 |
239.0 |
120.0 |
| O5 |
C1 |
H1A |
H1 |
121.0 |
240.0 |
| H1A |
C1 |
O5 |
C15 |
303.6 |
60.0 |
| C3 |
N1 |
C4 |
N2 |
359.9 |
0.1 |
| C3 |
N1 |
C4 |
C7 |
180.8 |
180.0 |
| N1 |
C4 |
N2 |
C8 |
181.1 |
180.0 |
| N1 |
C4 |
C7 |
C9 |
323.5 |
201.3 |
| O2 |
P1 |
O3 |
O4 |
117.7 |
120.0 |
| O3 |
P1 |
O2 |
HO2 |
360.0 |
300.0 |
| O3 |
P1 |
O4 |
HO4 |
360.0 |
180.0 |
| C11 |
P1 |
O2 |
HO2 |
239.8 |
180.0 |
| C11 |
P1 |
O4 |
HO4 |
114.4 |
300.0 |
| O3 |
P1 |
O2 |
O4 |
246.6 |
240.0 |
| O2 |
P1 |
O4 |
HO4 |
246.6 |
60.0 |
| O4 |
P1 |
O2 |
HO2 |
113.4 |
60.0 |
| C2 |
C3 |
N1 |
C4 |
0.2 |
359.9 |
| C3 |
C2 |
N2 |
C8 |
179.1 |
180.0 |
| C6 |
C2 |
N2 |
C8 |
359.0 |
360.0 |
| N1 |
C4 |
N2 |
C2 |
359.9 |
359.9 |
| C4 |
N2 |
C2 |
C8 |
181.1 |
180.1 |
| C2 |
N2 |
C8 |
H8 |
321.4 |
325.6 |
| C2 |
N2 |
C8 |
H8A |
202.0 |
205.6 |
| N1 |
C4 |
N2 |
C7 |
181.0 |
179.9 |
| C2 |
N2 |
C4 |
C8 |
178.9 |
179.9 |
| C4 |
N2 |
C8 |
H8 |
140.1 |
145.5 |
| C4 |
N2 |
C8 |
H8A |
20.7 |
25.5 |
| N2 |
C8 |
C1 |
H1 |
193.9 |
60.0 |
| N2 |
C8 |
C1 |
H1A |
314.6 |
300.0 |
| H8 |
C8 |
N2 |
H8A |
119.4 |
120.0 |
| HO2 |
O2 |
P1 |
O4 |
113.4 |
60.0 |
| C6 |
N3 |
C5 |
HN3 |
180.0 |
180.0 |
| C5 |
N3 |
C6 |
HN3 |
180.0 |
180.0 |
| C5 |
N3 |
HN3 |
C6 |
180.0 |
180.0 |
| N1 |
C4 |
C7 |
N2 |
178.8 |
180.1 |
| C7 |
C4 |
N2 |
C8 |
0.1 |
0.1 |
| C4 |
C7 |
C9 |
C10 |
179.1 |
180.1 |
| C4 |
C7 |
C9 |
H9 |
359.0 |
360.0 |
| N4 |
C5 |
N3 |
C6 |
0.1 |
0.0 |
| N4 |
C5 |
N3 |
HN3 |
180.1 |
180.0 |
| N5 |
C5 |
N3 |
C6 |
180.2 |
180.0 |
| N5 |
C5 |
N3 |
HN3 |
0.2 |
360.0 |
| C15 |
O5 |
C1 |
H1 |
64.3 |
300.0 |
| C15 |
O5 |
C1 |
H1A |
303.6 |
60.0 |
| C16 |
C15 |
O5 |
C20 |
179.3 |
180.3 |
| O5 |
C15 |
C16 |
C17 |
180.4 |
180.0 |
| O5 |
C15 |
C16 |
H16 |
0.4 |
359.9 |
| O5 |
C15 |
C20 |
C19 |
179.9 |
179.8 |
| O5 |
C15 |
C20 |
H20 |
359.9 |
0.1 |
| C13 |
C7 |
C9 |
H9 |
181.6 |
180.2 |
| C10 |
C9 |
C7 |
H9 |
180.0 |
180.1 |
| C7 |
C9 |
C10 |
H10 |
179.4 |
180.0 |
| H8 |
C8 |
C1 |
H1 |
314.3 |
180.0 |
| H8 |
C8 |
C1 |
H1A |
75.0 |
60.0 |
| N2 |
C8 |
H8 |
H8A |
240.9 |
240.0 |
| H8A |
C8 |
C1 |
H1 |
73.6 |
300.0 |
| H8A |
C8 |
C1 |
H1A |
194.4 |
180.0 |
| N2 |
C8 |
H8A |
H8 |
119.1 |
120.0 |
| C7 |
C9 |
C10 |
H9 |
180.0 |
179.9 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
| C7 |
C9 |
H9 |
C10 |
180.0 |
180.1 |
| H9 |
C9 |
C10 |
H10 |
359.4 |
0.0 |
| C11 |
C10 |
C9 |
H9 |
179.5 |
180.1 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| H10 |
C10 |
C9 |
H9 |
359.4 |
0.0 |
| C12 |
C11 |
C10 |
H10 |
180.0 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
1.4 |
0.1 |
| H14 |
C14 |
N5 |
HN5 |
0.0 |
0.2 |
| H14A |
C14 |
H14 |
H14B |
120.0 |
120.0 |
| H14A |
C14 |
N5 |
HN5 |
120.0 |
120.0 |
| H14 |
C14 |
H14A |
H14B |
240.0 |
240.0 |
| O5 |
C15 |
C16 |
C20 |
180.7 |
179.7 |
| C16 |
C15 |
C20 |
C19 |
0.6 |
359.5 |
| C16 |
C15 |
C20 |
H20 |
180.7 |
179.7 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
| C15 |
C16 |
C17 |
C18 |
359.8 |
360.0 |
| C15 |
C16 |
C17 |
H17 |
179.8 |
180.0 |
| O5 |
C15 |
C20 |
C16 |
179.3 |
180.3 |
| C20 |
C15 |
C16 |
C17 |
359.7 |
0.3 |
| C20 |
C15 |
C16 |
H16 |
179.7 |
180.3 |
| C15 |
C20 |
C19 |
H19 |
179.6 |
180.3 |
| C17 |
C16 |
C15 |
C20 |
359.7 |
0.3 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| H16 |
C16 |
C15 |
C20 |
179.7 |
180.3 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
| H16 |
C16 |
C17 |
C18 |
179.8 |
180.0 |
| H16 |
C16 |
C17 |
H17 |
359.8 |
360.0 |
| C18 |
C17 |
C16 |
H16 |
179.8 |
180.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| H17 |
C17 |
C16 |
H16 |
359.8 |
360.0 |
| C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
| C15 |
C20 |
C19 |
C18 |
359.6 |
0.5 |
| C19 |
C18 |
C17 |
H17 |
180.4 |
180.0 |
| C15 |
C20 |
C19 |
H20 |
180.0 |
180.3 |
| C15 |
C20 |
H20 |
C19 |
180.0 |
179.7 |
| H20 |
C20 |
C19 |
H19 |
359.5 |
0.0 |
| H14B |
C14 |
N5 |
HN5 |
240.0 |
240.1 |
| H14 |
C14 |
H14B |
H14A |
120.0 |
119.9 |