PDB Chemical Component HL9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HL9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C28 C25 1.385 1.378
C28 N13 1.340 1.320
C25 C24 1.423 1.395
N13 C27 1.343 1.320
C21 C20 1.529 1.530
C21 N11 1.409 1.469
C24 N11 1.400 1.392
C24 C26 1.396 1.394
C27 C26 1.393 1.379
C20 C18 1.475 1.531
N11 C22 1.446 1.468
O07 C23 1.248 1.213
C18 N09 1.417 1.465
C18 C19 1.455 1.532
C22 C19 1.523 1.530
C23 N09 1.353 1.347
C23 C17 1.524 1.507
C17 C16 1.535 1.529
C16 C15 1.528 1.530
C15 C14 1.536 1.530
C14 C01 1.513 1.530
C01 C08 1.528 1.541
C01 S04 1.817 1.839
N06 C08 1.468 1.472
N06 C05 1.369 1.340
C08 C10 1.565 1.534
S04 C12 1.842 1.839
C05 O03 1.250 1.216
C05 N02 1.369 1.340
C10 C12 1.542 1.541
C10 N02 1.457 1.471
C01 H011 1.100 1.090
C08 H081 1.100 1.090
C10 H101 1.100 1.090
C12 H122 1.100 1.090
C12 H121 1.100 1.091
C14 H142 1.100 1.090
C14 H141 1.100 1.090
C15 H151 1.100 1.090
C15 H152 1.100 1.091
C16 H162 1.100 1.090
C16 H161 1.100 1.091
C17 H171 1.100 1.090
C17 H172 1.100 1.090
C18 H181 1.100 1.090
C19 H192 1.100 1.090
C19 H191 1.100 1.091
C20 H202 1.100 1.090
C20 H201 1.100 1.091
C21 H212 1.100 1.090
C21 H211 1.100 1.090
C22 H221 1.100 1.091
C22 H222 1.100 1.090
C25 H251 1.080 1.080
C26 H261 1.080 1.080
C27 H271 1.080 1.080
C28 H281 1.080 1.081
N02 H021 1.000 0.970
N06 H061 1.000 0.970
N09 H091 1.000 0.971

Bond Angles for HL9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C28 C25 H251 120.1 120.5
N13 C28 H281 118.3 119.5
C25 C24 N11 124.0 120.9
C25 C24 C26 117.3 118.3
N13 C27 H271 116.8 119.6
C21 C20 H202 108.5 109.5
C21 C20 H201 108.5 109.5
C21 N11 C24 118.9 111.0
C21 N11 C22 114.8 111.2
N11 C21 H212 109.2 109.5
N11 C21 H211 109.1 109.5
C26 C24 N11 118.5 120.8
C24 C26 H261 121.4 120.5
C27 C26 H261 121.4 120.4
C20 C18 N09 112.0 109.5
C20 C18 H181 103.6 109.6
N11 C22 H221 108.4 109.4
N11 C22 H222 108.4 109.5
C19 C18 N09 118.8 109.5
C18 N09 C23 123.8 120.0
N09 C18 H181 104.2 109.5
C18 N09 H091 118.1 120.0
C19 C18 H181 103.8 109.5
C18 C19 H192 108.2 109.6
C18 C19 H191 108.2 109.5
C22 C19 H192 108.2 109.5
C22 C19 H191 108.2 109.5
C23 N09 H091 118.1 120.0
C23 C17 H171 108.3 109.4
C23 C17 H172 108.3 109.5
C17 C16 H162 108.7 109.5
C17 C16 H161 108.7 109.5
C16 C15 H151 108.8 109.5
C16 C15 H152 108.8 109.4
C15 C14 H142 108.9 109.4
C15 C14 H141 108.9 109.5
C14 C01 S04 113.6 110.8
C14 C01 H011 109.1 110.8
C08 C01 S04 103.0 102.7
C01 C08 C10 110.2 112.4
C08 C01 H011 108.9 110.8
C01 C08 H081 109.6 110.2
C01 S04 C12 89.1 94.8
S04 C01 H011 105.8 110.7
N06 C08 H081 110.5 110.6
N06 C05 O03 126.8 123.0
C08 C10 C12 107.9 112.4
C08 C10 N02 102.0 104.0
C10 C08 H081 109.1 110.2
C08 C10 H101 110.2 110.3
S04 C12 H122 110.8 110.7
S04 C12 H121 110.8 110.9
N02 C05 O03 123.6 123.1
C05 N02 C10 113.1 109.0
C05 N02 H021 123.4 125.4
C12 C10 N02 113.9 109.2
C12 C10 H101 110.6 110.3
C10 C12 H122 110.8 110.7
C10 C12 H121 110.8 110.8
N02 C10 H101 111.9 110.6
C10 N02 H021 123.4 125.5
H122 C12 H121 109.5 110.7
H142 C14 H141 109.5 109.5
H151 C15 H152 109.5 109.4
H162 C16 H161 109.5 109.4
H171 C17 H172 109.5 109.5
H192 C19 H191 109.5 109.5
H202 C20 H201 109.5 109.5
H212 C21 H211 109.5 109.4
H221 C22 H222 109.4 109.4

Torsion Angles for HL9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C28 C25 C24 N11 177.3 180.0
N13 C28 C25 H251 179.9 180.0
C28 N13 C27 H271 181.9 180.2
C21 N11 C24 C25 354.9 0.3
C26 C24 C25 N11 183.6 180.2
C25 C24 C26 H261 179.7 179.7
N13 C27 C26 H261 178.8 180.1
C21 C20 C18 N09 173.9 182.4
C21 C20 C18 H181 62.2 62.2
H202 C20 C21 H201 241.1 120.0
C25 C24 N11 C21 354.9 0.3
N11 C21 C20 H202 174.5 299.2
N11 C21 C20 H201 293.4 179.1
C26 C24 N11 C21 171.2 180.0
C21 N11 C22 H221 169.8 301.7
C21 N11 C22 H222 288.6 181.7
H212 C21 N11 H211 119.6 119.9
C25 C24 N11 C26 183.6 180.3
C21 N11 C24 C22 160.7 124.2
C24 N11 C21 H212 23.7 54.1
C24 N11 C21 H211 264.1 294.2
N11 C24 C26 H261 3.1 360.0
C24 N11 C22 H221 331.3 65.8
C24 N11 C22 H222 90.0 305.8
C25 C24 C26 N11 176.6 179.8
C21 N11 C24 C26 171.2 180.0
C27 C26 C24 H261 180.0 180.0
C27 C26 C24 N11 183.1 180.0
C24 C26 C27 H261 180.0 180.0
C19 C18 C20 N09 136.9 119.9
C20 C18 N09 C23 261.3 274.7
N09 C18 C20 H181 111.7 120.2
C20 C18 N09 H091 81.3 94.6
C19 C18 C20 H181 248.6 240.1
C20 C18 C19 H192 164.7 177.6
C20 C18 C19 H191 283.2 297.7
C21 N11 C22 C24 198.5 235.9
C22 N11 C21 H212 186.1 178.3
C22 N11 C21 H211 66.5 58.3
N11 C22 C19 H192 195.8 180.8
N11 C22 C19 H191 77.3 60.7
H221 C22 N11 H222 241.3 119.9
O07 C23 N09 H091 176.7 180.0
O07 C23 C17 H171 82.6 240.0
O07 C23 C17 H172 201.2 120.0
C20 C18 N09 H181 248.7 239.7
C19 C18 N09 H181 114.8 120.1
N09 C18 C19 H192 298.3 297.5
N09 C18 C19 H191 56.8 57.6
C23 N09 C18 H091 180.0 180.0
C20 C18 C19 N09 226.3 240.1
C20 C18 C19 H181 111.3 120.0
C19 C18 N09 C23 127.4 155.0
N09 C18 C19 H181 245.0 239.9
C19 C18 N09 H091 307.4 335.0
C22 C19 C18 H192 239.2 240.0
C22 C19 C18 H191 120.7 119.9
H192 C19 C18 H191 241.5 239.9
C22 C19 C18 N09 177.6 177.5
C22 C19 C18 H181 292.6 297.7
C18 C19 C22 H192 120.8 120.0
C18 C19 C22 H191 239.2 240.1
H192 C19 C22 H191 118.5 120.1
C23 N09 C18 H181 12.6 34.9
C18 N09 C23 H091 180.0 180.0
N09 C23 C17 H171 262.4 60.0
N09 C23 C17 H172 21.0 300.0
C23 C17 C16 H162 57.9 60.0
C23 C17 C16 H161 177.0 300.0
H171 C17 C23 H172 241.4 120.0
C17 C16 C15 H151 293.3 60.0
C17 C16 C15 H152 52.5 300.0
H162 C16 C17 H161 240.9 120.0
C16 C15 C14 H142 298.0 60.0
C16 C15 C14 H141 57.3 300.0
H151 C15 C16 H152 240.7 120.0
C15 C14 C01 S04 283.3 288.3
C15 C14 C01 H011 41.1 51.6
H142 C14 C15 H141 240.7 120.0
C08 C01 C14 S04 241.0 246.7
C08 C01 C14 H011 123.3 123.4
C14 C01 C08 H081 279.5 266.4
C14 C01 S04 C12 188.4 207.0
S04 C01 C14 H011 242.2 236.7
C14 C01 C08 S04 124.7 118.3
C14 C01 C08 H011 236.6 236.6
C08 C01 S04 C12 314.5 325.3
S04 C01 C08 H011 112.0 118.3
N06 C08 C01 H081 123.6 121.7
C01 C08 C10 C12 356.9 359.9
C01 C08 C10 N02 236.7 242.0
C10 C08 C01 H081 239.9 236.6
C01 C08 C10 H101 117.8 123.4
C14 C01 S04 H011 119.7 123.3
S04 C01 C08 C10 34.7 24.7
C08 C01 S04 H011 245.8 241.6
S04 C01 C08 H081 154.8 148.1
C01 S04 C12 H122 163.4 276.4
C01 S04 C12 H121 285.1 153.1
N06 C08 C01 S04 278.4 269.7
N06 C08 C01 H011 166.5 151.4
C01 C08 N06 H081 236.9 238.5
C08 N06 C05 O03 178.1 180.1
C10 C08 N06 H081 117.2 118.3
N06 C08 C10 H101 239.3 241.5
N02 C05 N06 O03 186.5 179.9
N06 C05 N02 H021 174.0 180.0
C10 C08 C01 S04 34.7 24.7
C10 C08 C01 H011 282.7 266.4
C01 C08 C10 H081 120.4 123.4
N06 C08 C10 H081 241.9 241.5
C05 N02 C10 C08 4.7 360.0
C12 C10 C08 N02 120.2 118.0
C12 C10 C08 H101 239.2 236.5
C08 C10 C12 H122 211.3 93.7
C08 C10 C12 H121 89.5 216.9
N02 C10 C08 H101 118.9 118.6
C08 C10 N02 H021 184.7 180.0
C12 S04 C01 H011 68.8 83.7
S04 C12 C10 H101 209.8 212.0
C10 C12 S04 H122 240.9 118.3
C10 C12 S04 H121 119.2 241.6
H122 C12 S04 H121 238.3 123.3
O03 C05 N02 C10 180.2 180.0
O03 C05 N02 H021 0.2 359.9
N06 C05 N02 O03 173.8 180.1
C08 C10 N02 C05 4.7 360.0
C12 C10 N02 C05 248.9 239.8
C05 N02 C10 H101 122.5 118.4
C10 N02 C05 H021 180.0 180.1
C01 S04 C12 C10 44.3 34.7
C08 C10 C12 N02 247.6 245.1
C12 C10 C08 H081 236.5 236.5
C08 C10 C12 H101 120.6 123.5
S04 C12 C10 H122 119.1 241.7
S04 C12 C10 H121 240.8 118.5
C05 N02 C10 C12 248.9 239.8
N02 C10 C12 H101 233.0 238.3
C12 C10 N02 H021 68.8 59.9
H122 C12 C10 H121 121.7 236.8
C08 C10 N02 C12 115.9 120.1
N02 C10 C08 H081 116.3 118.6
C08 C10 N02 H101 242.2 241.6
C10 N02 C05 O03 180.2 180.0
C05 N02 C10 H021 180.0 179.9
C12 C10 N02 H101 126.3 121.5
N02 C10 C12 H122 323.7 208.6
N02 C10 C12 H121 201.9 331.8
C14 C01 H011 S04 237.4 236.7
C08 C01 H011 S04 110.1 113.3
H011 C01 C08 C10 282.7 266.4
H011 C01 C08 H081 42.9 29.7
H011 C01 S04 C12 68.8 83.7
H081 C08 C01 S04 154.8 148.1
C01 C08 H081 C10 239.2 235.4
H081 C08 C01 H011 42.9 29.7
H081 C08 C10 C12 236.5 236.5
H081 C08 C10 N02 116.3 118.6
H081 C08 C10 H101 357.4 360.0
C08 C10 H101 C12 240.8 235.3
C08 C10 H101 N02 112.7 114.5
H101 C10 C08 H081 357.4 360.0
C12 C10 H101 N02 231.9 239.2
H101 C10 C12 H122 90.6 330.2
H101 C10 C12 H121 328.9 93.4
H101 C10 N02 H021 302.5 298.4
S04 C12 H122 H121 122.5 236.5
H122 C12 C10 N02 323.7 208.6
H122 C12 C10 H101 90.6 330.2
C10 C12 H122 H121 237.5 123.2
S04 C12 H121 H122 237.5 123.3
H121 C12 C10 N02 201.9 331.8
H121 C12 C10 H101 328.9 93.4
C10 C12 H121 H122 122.5 236.8
C15 C14 H142 H141 119.0 240.0
H142 C14 C01 S04 163.0 48.3
H142 C14 C01 H011 280.7 171.6
C15 C14 H141 H142 241.0 119.9
H141 C14 C01 S04 43.6 168.3
H141 C14 C01 H011 161.3 291.6
C16 C15 H151 H152 118.8 240.0
H151 C15 C14 H142 177.6 180.0
H151 C15 C14 H141 297.0 60.1
C16 C15 H152 H151 241.2 120.0
H152 C15 C14 H142 58.4 300.0
H152 C15 C14 H141 177.7 180.0
C17 C16 H162 H161 118.6 240.0
H162 C16 C15 H151 172.8 180.0
H162 C16 C15 H152 292.1 60.1
C17 C16 H161 H162 241.4 120.0
H161 C16 C15 H151 53.7 300.0
H161 C16 C15 H152 173.0 180.0
C23 C17 H171 H172 117.9 240.0
H171 C17 C16 H162 297.2 180.0
H171 C17 C16 H161 56.3 60.0
C23 C17 H172 H171 242.1 119.9
H172 C17 C16 H162 178.6 300.0
H172 C17 C16 H161 297.7 180.0
C20 C18 H181 N09 117.3 120.2
C19 C18 H181 N09 235.0 239.9
H181 C18 N09 C23 12.6 34.9
H181 C18 N09 H091 192.6 214.9
H181 C18 C19 H192 53.3 57.6
H181 C18 C19 H191 171.8 177.8
H192 C19 C18 N09 298.3 297.5
H192 C19 C18 H181 53.3 57.6
C18 C19 H192 H191 117.7 120.1
C22 C19 H192 H191 242.4 239.9
H191 C19 C18 N09 56.8 57.6
H191 C19 C18 H181 171.8 177.8
C18 C19 H191 H192 242.3 239.9
C22 C19 H191 H192 117.6 120.1
C21 C20 H202 H201 118.3 239.9
H202 C20 C18 N09 53.3 302.4
H202 C20 C18 H181 301.6 182.2
C21 C20 H201 H202 241.7 120.0
H201 C20 C18 N09 294.5 62.5
H201 C20 C18 H181 182.8 302.2
H212 C21 C20 H202 294.7 59.2
H212 C21 C20 H201 53.5 299.2
H212 C21 N11 C24 23.7 54.1
H212 C21 N11 C22 186.1 178.3
N11 C21 H212 H211 240.6 240.0
H211 C21 C20 H202 54.3 179.2
H211 C21 C20 H201 173.2 59.1
H211 C21 N11 C24 264.1 294.2
H211 C21 N11 C22 66.5 58.3
N11 C21 H211 H212 119.4 120.0
N11 C22 H221 H222 118.1 240.1
H221 C22 C19 H192 75.1 300.9
H221 C22 C19 H191 316.7 180.8
N11 C22 H222 H221 241.9 119.9
H222 C22 C19 H192 316.4 60.8
H222 C22 C19 H191 198.0 300.7
H251 C25 C24 N11 357.3 360.0
H251 C25 C24 C26 180.9 180.2
H261 C26 C24 N11 3.1 360.0
H271 C27 C26 H261 358.8 360.0
H281 C28 C25 H251 359.9 0.0
H021 N02 C05 O03 0.2 359.9
C05 N02 H021 C10 180.0 180.1
H021 N02 C10 H101 302.5 298.4
H061 N06 C08 H081 61.3 61.7
H061 N06 C05 O03 358.1 0.1
C18 N09 H091 C23 180.0 180.0
H091 N09 C18 H181 192.6 214.9