PDB Chemical Component HL2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HL2
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C |
O |
1.226 |
1.208 |
C |
CA |
1.509 |
1.507 |
C |
OXT |
1.430 |
1.342 |
N |
CA |
1.461 |
1.468 |
N |
H2 |
1.000 |
1.009 |
N |
H |
1.000 |
1.008 |
CA |
CB |
1.537 |
1.530 |
CA |
HA |
1.100 |
1.090 |
CB |
CG |
1.535 |
1.530 |
CB |
OH |
1.418 |
1.428 |
CB |
HB |
1.100 |
1.089 |
CG |
CD1 |
1.529 |
1.530 |
CG |
CD2 |
1.514 |
1.530 |
CG |
HG |
1.100 |
1.090 |
OH |
HOH |
0.950 |
0.967 |
CD1 |
HD1 |
1.100 |
1.090 |
CD1 |
HD1A |
1.099 |
1.089 |
CD1 |
HD1B |
1.100 |
1.091 |
CD2 |
HD2 |
1.100 |
1.090 |
CD2 |
HD2A |
1.100 |
1.090 |
CD2 |
HD2B |
1.099 |
1.090 |
OXT |
HXT |
0.950 |
0.967 |
Bond Angles for HL2
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O |
C |
CA |
117.7 |
120.0 |
O |
C |
OXT |
121.2 |
120.0 |
CA |
C |
OXT |
121.1 |
120.0 |
C |
CA |
N |
112.1 |
109.5 |
C |
CA |
CB |
108.7 |
109.5 |
C |
CA |
HA |
106.2 |
109.5 |
C |
OXT |
HXT |
109.5 |
117.0 |
CA |
N |
H2 |
109.5 |
111.0 |
CA |
N |
H |
109.5 |
111.1 |
N |
CA |
CB |
102.6 |
109.5 |
N |
CA |
HA |
112.0 |
109.4 |
H2 |
N |
H |
109.5 |
111.0 |
CB |
CA |
HA |
115.2 |
109.5 |
CA |
CB |
CG |
119.7 |
109.4 |
CA |
CB |
OH |
107.6 |
109.5 |
CA |
CB |
HB |
102.5 |
109.5 |
CG |
CB |
OH |
105.6 |
109.5 |
CG |
CB |
HB |
104.7 |
109.4 |
CB |
CG |
CD1 |
117.3 |
109.5 |
CB |
CG |
CD2 |
107.8 |
109.5 |
CB |
CG |
HG |
106.1 |
109.5 |
OH |
CB |
HB |
117.4 |
109.5 |
CB |
OH |
HOH |
109.5 |
114.0 |
CD1 |
CG |
CD2 |
111.9 |
109.5 |
CD1 |
CG |
HG |
101.4 |
109.4 |
CG |
CD1 |
HD1 |
109.5 |
109.4 |
CG |
CD1 |
HD1A |
109.4 |
109.5 |
CG |
CD1 |
HD1B |
109.5 |
109.5 |
CD2 |
CG |
HG |
112.2 |
109.5 |
CG |
CD2 |
HD2 |
109.5 |
109.4 |
CG |
CD2 |
HD2A |
109.5 |
109.5 |
CG |
CD2 |
HD2B |
109.5 |
109.5 |
HD1 |
CD1 |
HD1A |
109.5 |
109.5 |
HD1 |
CD1 |
HD1B |
109.5 |
109.4 |
HD1A |
CD1 |
HD1B |
109.5 |
109.5 |
HD2 |
CD2 |
HD2A |
109.5 |
109.5 |
HD2 |
CD2 |
HD2B |
109.4 |
109.5 |
HD2A |
CD2 |
HD2B |
109.5 |
109.5 |
Torsion Angles for HL2
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
C |
O |
OXT |
180.0 |
180.3 |
O |
C |
CA |
N |
268.6 |
340.0 |
O |
C |
CA |
CB |
21.3 |
100.0 |
O |
C |
CA |
HA |
145.9 |
220.0 |
O |
C |
OXT |
HXT |
0.0 |
360.0 |
O |
C |
CA |
OXT |
180.0 |
179.7 |
CA |
C |
OXT |
HXT |
180.0 |
179.7 |
C |
CA |
N |
H2 |
180.0 |
66.1 |
C |
CA |
N |
H |
300.0 |
190.1 |
N |
CA |
C |
CB |
247.3 |
240.0 |
N |
CA |
C |
HA |
122.7 |
120.0 |
CB |
CA |
C |
HA |
235.4 |
240.0 |
C |
CA |
CB |
CG |
71.5 |
181.5 |
C |
CA |
CB |
OH |
191.9 |
301.5 |
C |
CA |
CB |
HB |
316.3 |
61.6 |
O |
C |
OXT |
CA |
180.0 |
180.3 |
OXT |
C |
CA |
N |
88.5 |
160.2 |
OXT |
C |
CA |
CB |
201.3 |
280.2 |
OXT |
C |
CA |
HA |
325.9 |
40.3 |
N |
CA |
C |
OXT |
88.5 |
160.2 |
C |
CA |
N |
CB |
116.5 |
120.0 |
C |
CA |
N |
HA |
240.7 |
240.0 |
H2 |
N |
CA |
H |
240.0 |
236.0 |
CB |
CA |
N |
HA |
124.2 |
120.0 |
N |
CA |
CB |
CG |
190.4 |
301.5 |
N |
CA |
CB |
OH |
310.8 |
61.5 |
N |
CA |
CB |
HB |
75.2 |
181.6 |
CA |
N |
H2 |
H |
120.0 |
124.0 |
H2 |
N |
CA |
CB |
63.5 |
306.1 |
H2 |
N |
CA |
HA |
299.3 |
186.1 |
CA |
N |
H |
H2 |
240.0 |
236.0 |
H |
N |
CA |
CB |
183.5 |
70.1 |
H |
N |
CA |
HA |
59.3 |
310.1 |
CB |
CA |
C |
OXT |
201.3 |
280.2 |
C |
CA |
CB |
N |
241.1 |
240.0 |
C |
CA |
CB |
HA |
119.1 |
120.0 |
CB |
CA |
N |
H2 |
63.5 |
306.1 |
CB |
CA |
N |
H |
183.5 |
70.1 |
N |
CA |
CB |
HA |
238.0 |
240.0 |
CG |
CB |
CA |
OH |
239.6 |
240.0 |
CG |
CB |
CA |
HB |
115.2 |
120.0 |
CA |
CB |
CG |
CD1 |
354.4 |
174.5 |
CA |
CB |
CG |
CD2 |
227.2 |
294.5 |
CA |
CB |
CG |
HG |
106.8 |
54.5 |
OH |
CB |
CA |
HB |
235.6 |
239.9 |
CA |
CB |
OH |
HOH |
180.0 |
300.0 |
HA |
CA |
C |
OXT |
325.9 |
40.3 |
C |
CA |
HA |
N |
122.8 |
120.0 |
C |
CA |
HA |
CB |
239.5 |
240.0 |
HA |
CA |
N |
H2 |
299.3 |
186.1 |
HA |
CA |
N |
H |
59.3 |
310.1 |
N |
CA |
HA |
CB |
116.8 |
120.0 |
HA |
CA |
CB |
CG |
312.4 |
61.5 |
HA |
CA |
CB |
OH |
72.8 |
181.5 |
HA |
CA |
CB |
HB |
197.3 |
301.5 |
CG |
CB |
CA |
HA |
312.4 |
61.5 |
CA |
CB |
CG |
OH |
121.4 |
120.0 |
CA |
CB |
CG |
HB |
246.0 |
240.0 |
OH |
CB |
CG |
HB |
124.6 |
120.0 |
CG |
CB |
OH |
HOH |
309.0 |
60.0 |
CD1 |
CG |
CB |
CD2 |
127.2 |
240.0 |
CD1 |
CG |
CB |
HG |
247.6 |
120.0 |
CB |
CG |
CD1 |
HD1 |
180.0 |
54.7 |
CB |
CG |
CD1 |
HD1A |
300.0 |
174.8 |
CB |
CG |
CD1 |
HD1B |
60.0 |
294.8 |
CD2 |
CG |
CB |
HG |
120.4 |
240.0 |
CB |
CG |
CD2 |
HD2 |
180.0 |
60.0 |
CB |
CG |
CD2 |
HD2A |
300.0 |
180.0 |
CB |
CG |
CD2 |
HD2B |
60.0 |
300.0 |
OH |
CB |
CA |
HA |
72.8 |
181.5 |
CA |
CB |
OH |
CG |
231.0 |
240.0 |
CA |
CB |
OH |
HB |
114.9 |
120.0 |
CG |
CB |
OH |
HB |
243.8 |
240.0 |
OH |
CB |
CG |
CD1 |
233.0 |
54.5 |
OH |
CB |
CG |
CD2 |
105.8 |
174.5 |
OH |
CB |
CG |
HG |
345.4 |
294.5 |
HB |
CB |
CA |
HA |
197.3 |
301.5 |
CA |
CB |
HB |
CG |
125.7 |
120.0 |
CA |
CB |
HB |
OH |
242.3 |
240.0 |
CG |
CB |
HB |
OH |
116.7 |
120.0 |
HB |
CB |
CG |
CD1 |
108.4 |
294.5 |
HB |
CB |
CG |
CD2 |
341.2 |
54.5 |
HB |
CB |
CG |
HG |
220.8 |
174.5 |
HB |
CB |
OH |
HOH |
65.2 |
180.0 |
CD1 |
CG |
CB |
OH |
233.0 |
54.5 |
CD1 |
CG |
CB |
HB |
108.4 |
294.5 |
CB |
CG |
CD1 |
CD2 |
234.8 |
120.1 |
CB |
CG |
CD1 |
HG |
115.0 |
240.0 |
CD2 |
CG |
CD1 |
HG |
240.2 |
120.0 |
CD1 |
CG |
CD2 |
HD2 |
49.7 |
180.0 |
CD1 |
CG |
CD2 |
HD2A |
169.6 |
300.0 |
CD1 |
CG |
CD2 |
HD2B |
289.7 |
60.0 |
HD1 |
CD1 |
CG |
HD1A |
240.0 |
239.9 |
HD1 |
CD1 |
CG |
HD1B |
120.0 |
119.9 |
HD1A |
CD1 |
CG |
HD1B |
240.0 |
240.0 |
CD2 |
CG |
CB |
OH |
105.8 |
174.5 |
CD2 |
CG |
CB |
HB |
341.2 |
54.5 |
CB |
CG |
CD2 |
CD1 |
130.4 |
240.0 |
CB |
CG |
CD2 |
HG |
243.6 |
120.0 |
CD1 |
CG |
CD2 |
HG |
113.2 |
240.0 |
CD2 |
CG |
CD1 |
HD1 |
305.2 |
294.7 |
CD2 |
CG |
CD1 |
HD1A |
65.3 |
54.7 |
CD2 |
CG |
CD1 |
HD1B |
185.2 |
174.7 |
HD2 |
CD2 |
CG |
HD2A |
240.0 |
240.0 |
HD2 |
CD2 |
CG |
HD2B |
120.0 |
120.0 |
HD2A |
CD2 |
CG |
HD2B |
240.0 |
240.0 |
HG |
CG |
CB |
OH |
345.4 |
294.5 |
HG |
CG |
CB |
HB |
220.8 |
174.5 |
CB |
CG |
HG |
CD1 |
236.9 |
120.0 |
CB |
CG |
HG |
CD2 |
117.4 |
240.0 |
CD1 |
CG |
HG |
CD2 |
240.5 |
120.0 |
HG |
CG |
CD1 |
HD1 |
65.0 |
174.7 |
HG |
CG |
CD1 |
HD1A |
185.0 |
294.8 |
HG |
CG |
CD1 |
HD1B |
305.0 |
54.8 |
HG |
CG |
CD2 |
HD2 |
296.4 |
300.0 |
HG |
CG |
CD2 |
HD2A |
56.4 |
60.0 |
HG |
CG |
CD2 |
HD2B |
176.4 |
180.0 |
HOH |
OH |
CB |
HB |
65.2 |
180.0 |
HD1 |
CD1 |
CG |
CD2 |
305.2 |
294.7 |
HD1 |
CD1 |
CG |
HG |
65.0 |
174.7 |
CG |
CD1 |
HD1 |
HD1A |
120.0 |
120.1 |
CG |
CD1 |
HD1 |
HD1B |
240.0 |
240.1 |
HD1A |
CD1 |
HD1 |
HD1B |
120.0 |
120.0 |
HD1A |
CD1 |
CG |
CD2 |
65.3 |
54.7 |
HD1A |
CD1 |
CG |
HG |
185.0 |
294.8 |
CG |
CD1 |
HD1A |
HD1 |
240.0 |
240.0 |
CG |
CD1 |
HD1A |
HD1B |
120.0 |
120.0 |
HD1 |
CD1 |
HD1A |
HD1B |
240.0 |
240.0 |
HD1B |
CD1 |
CG |
CD2 |
185.2 |
174.7 |
HD1B |
CD1 |
CG |
HG |
305.0 |
54.8 |
CG |
CD1 |
HD1B |
HD1 |
120.0 |
119.9 |
CG |
CD1 |
HD1B |
HD1A |
240.0 |
240.0 |
HD1 |
CD1 |
HD1B |
HD1A |
120.0 |
120.0 |
HD2 |
CD2 |
CG |
HG |
296.4 |
300.0 |
CG |
CD2 |
HD2 |
HD2A |
120.0 |
120.0 |
CG |
CD2 |
HD2 |
HD2B |
240.0 |
240.0 |
HD2A |
CD2 |
HD2 |
HD2B |
120.0 |
120.0 |
HD2A |
CD2 |
CG |
HG |
56.4 |
60.0 |
CG |
CD2 |
HD2A |
HD2 |
240.0 |
240.0 |
CG |
CD2 |
HD2A |
HD2B |
120.0 |
120.0 |
HD2 |
CD2 |
HD2A |
HD2B |
240.0 |
240.0 |
HD2B |
CD2 |
CG |
HG |
176.4 |
180.0 |
CG |
CD2 |
HD2B |
HD2 |
120.0 |
120.0 |
CG |
CD2 |
HD2B |
HD2A |
240.0 |
240.0 |
HD2 |
CD2 |
HD2B |
HD2A |
120.0 |
120.0 |