PDB Chemical Component HK8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HK8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C1 |
1.212 |
1.208 |
| C1 |
O1 |
1.310 |
1.342 |
| C1 |
C2 |
1.502 |
1.507 |
| C2 |
C3 |
1.510 |
1.507 |
| C3 |
C15 |
1.391 |
1.385 |
| C3 |
C4 |
1.387 |
1.382 |
| C15 |
C14 |
1.393 |
1.391 |
| C4 |
C5 |
1.383 |
1.382 |
| N2 |
C14 |
1.414 |
1.395 |
| N2 |
C13 |
1.350 |
1.324 |
| C14 |
C6 |
1.400 |
1.393 |
| O3 |
C13 |
1.232 |
1.216 |
| C13 |
C12 |
1.497 |
1.467 |
| C11 |
C12 |
1.399 |
1.398 |
| C11 |
C10 |
1.379 |
1.378 |
| C5 |
C6 |
1.397 |
1.389 |
| C12 |
C7 |
1.413 |
1.403 |
| C6 |
N1 |
1.409 |
1.400 |
| C10 |
C9 |
1.377 |
1.386 |
| C7 |
N1 |
1.411 |
1.389 |
| C7 |
C8 |
1.395 |
1.387 |
| C9 |
C8 |
1.384 |
1.383 |
| C9 |
CL |
1.737 |
1.736 |
| C11 |
H9 |
1.080 |
1.081 |
| C10 |
H8 |
1.080 |
1.080 |
| C8 |
H7 |
1.080 |
1.080 |
| N1 |
H6 |
1.000 |
0.971 |
| N2 |
H10 |
1.000 |
0.970 |
| C5 |
H5 |
1.079 |
1.080 |
| C4 |
H4 |
1.080 |
1.080 |
| C15 |
H11 |
1.080 |
1.080 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H3 |
1.100 |
1.090 |
| O1 |
H1 |
0.950 |
0.966 |
Bond Angles for HK8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C1 |
O1 |
123.8 |
120.0 |
| C1 |
O1 |
H1 |
109.5 |
117.0 |
| C1 |
C2 |
H2 |
108.7 |
109.5 |
| C1 |
C2 |
H3 |
108.7 |
109.5 |
| C3 |
C15 |
H11 |
119.3 |
120.2 |
| C3 |
C4 |
H4 |
119.4 |
120.0 |
| C4 |
C5 |
H5 |
119.9 |
119.9 |
| N2 |
C14 |
C6 |
123.0 |
121.3 |
| C14 |
N2 |
H10 |
113.1 |
116.5 |
| O3 |
C13 |
C12 |
119.5 |
117.1 |
| C13 |
C12 |
C7 |
125.3 |
120.8 |
| C11 |
C12 |
C7 |
118.4 |
119.3 |
| C11 |
C10 |
C9 |
119.7 |
120.4 |
| C10 |
C11 |
H9 |
119.4 |
120.0 |
| C11 |
C10 |
H8 |
120.1 |
119.8 |
| C12 |
C7 |
N1 |
122.8 |
120.0 |
| C12 |
C7 |
C8 |
120.0 |
119.9 |
| C6 |
N1 |
H6 |
120.0 |
120.4 |
| C10 |
C9 |
C8 |
121.2 |
120.2 |
| C10 |
C9 |
CL |
119.7 |
119.9 |
| C9 |
C10 |
H8 |
120.2 |
119.8 |
| C7 |
N1 |
H6 |
120.0 |
120.5 |
| C7 |
C8 |
H7 |
120.2 |
120.0 |
| CL |
C9 |
C8 |
119.1 |
119.9 |
| C9 |
C8 |
H7 |
120.2 |
120.0 |
| H2 |
C2 |
H3 |
109.5 |
109.5 |
Torsion Angles for HK8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C1 |
O1 |
H1 |
360.0 |
360.0 |
| O2 |
C1 |
C2 |
H2 |
208.5 |
240.0 |
| O2 |
C1 |
C2 |
H3 |
327.7 |
120.0 |
| O1 |
C1 |
C2 |
H2 |
29.9 |
60.0 |
| O1 |
C1 |
C2 |
H3 |
149.0 |
300.0 |
| H2 |
C2 |
C1 |
H3 |
240.9 |
120.1 |
| C2 |
C3 |
C15 |
H11 |
1.0 |
359.8 |
| C2 |
C3 |
C4 |
H4 |
359.5 |
0.9 |
| C15 |
C3 |
C4 |
H4 |
179.3 |
180.9 |
| C3 |
C4 |
C5 |
H5 |
179.3 |
180.1 |
| C15 |
C14 |
N2 |
H10 |
329.1 |
320.3 |
| C6 |
C14 |
N2 |
H10 |
148.1 |
139.8 |
| C14 |
C6 |
N1 |
H6 |
239.7 |
241.3 |
| O3 |
C13 |
C12 |
C7 |
206.9 |
219.1 |
| C11 |
C12 |
C13 |
C7 |
174.4 |
179.5 |
| C13 |
C12 |
C7 |
N1 |
357.9 |
354.7 |
| C13 |
C12 |
C7 |
C8 |
173.4 |
176.5 |
| C13 |
C12 |
C11 |
C7 |
185.2 |
180.5 |
| C11 |
C12 |
C7 |
N1 |
183.7 |
175.3 |
| C11 |
C12 |
C7 |
C8 |
359.2 |
357.0 |
| C10 |
C11 |
C12 |
C7 |
2.9 |
1.8 |
| C11 |
C10 |
C9 |
C8 |
359.9 |
358.8 |
| C11 |
C10 |
C9 |
CL |
178.1 |
178.9 |
| C9 |
C10 |
C11 |
H8 |
180.0 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
54.3 |
62.9 |
| C12 |
C7 |
N1 |
H6 |
124.5 |
120.5 |
| C12 |
C7 |
C8 |
H7 |
178.4 |
182.1 |
| C7 |
N1 |
C6 |
H6 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H9 |
177.6 |
180.2 |
| C11 |
C10 |
C9 |
H8 |
180.0 |
180.0 |
| CL |
C9 |
C10 |
C8 |
178.2 |
180.1 |
| C10 |
C9 |
C8 |
H7 |
182.1 |
179.9 |
| C12 |
C7 |
N1 |
C8 |
175.6 |
181.7 |
| C6 |
N1 |
C7 |
H6 |
180.0 |
180.0 |
| N1 |
C7 |
C8 |
H7 |
354.1 |
3.9 |
| C12 |
C7 |
C8 |
N1 |
184.3 |
178.3 |
| C9 |
C8 |
C7 |
H7 |
180.0 |
180.0 |
| C12 |
C7 |
C8 |
C9 |
358.4 |
2.2 |
| C10 |
C9 |
C8 |
CL |
178.2 |
180.1 |
| C8 |
C9 |
C10 |
H8 |
179.9 |
178.8 |
| C7 |
C8 |
C9 |
H7 |
180.0 |
180.0 |
| C10 |
C9 |
CL |
C8 |
181.8 |
179.9 |
| CL |
C9 |
C10 |
H8 |
358.1 |
358.9 |
| CL |
C9 |
C8 |
H7 |
3.9 |
359.8 |
| H9 |
C11 |
C12 |
C7 |
182.9 |
181.8 |
| H9 |
C11 |
C10 |
C9 |
177.6 |
180.2 |
| H9 |
C11 |
C10 |
H8 |
357.6 |
0.2 |
| C11 |
C10 |
H8 |
C9 |
180.0 |
180.0 |
| H8 |
C10 |
C11 |
H9 |
357.6 |
0.2 |
| H8 |
C10 |
C9 |
C8 |
179.9 |
178.8 |
| H8 |
C10 |
C9 |
CL |
358.1 |
358.9 |
| H10 |
N2 |
C14 |
C6 |
148.1 |
139.8 |
| H4 |
C4 |
C5 |
H5 |
359.3 |
0.1 |
| C1 |
C2 |
H2 |
H3 |
118.7 |
240.0 |
| C1 |
C2 |
H3 |
H2 |
241.3 |
120.0 |