PDB Chemical Component HK1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HK1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C16 |
O3 |
1.433 |
1.428 |
| O3 |
C15 |
1.370 |
1.360 |
| C17 |
C15 |
1.389 |
1.382 |
| C17 |
C18 |
1.398 |
1.397 |
| N2 |
N1 |
1.367 |
1.401 |
| N2 |
C8 |
1.337 |
1.320 |
| C15 |
C13 |
1.415 |
1.393 |
| N1 |
C7 |
1.354 |
1.364 |
| C8 |
C18 |
1.456 |
1.486 |
| C8 |
C9 |
1.448 |
1.404 |
| C18 |
C11 |
1.390 |
1.391 |
| C13 |
O2 |
1.368 |
1.360 |
| C13 |
C12 |
1.386 |
1.386 |
| O2 |
C14 |
1.430 |
1.429 |
| C7 |
C9 |
1.378 |
1.363 |
| C7 |
C4 |
1.481 |
1.480 |
| C9 |
C10 |
1.479 |
1.509 |
| C11 |
C12 |
1.388 |
1.380 |
| C11 |
C10 |
1.502 |
1.510 |
| C3 |
C4 |
1.392 |
1.396 |
| C3 |
C2 |
1.383 |
1.379 |
| C4 |
C5 |
1.391 |
1.395 |
| C2 |
C1 |
1.389 |
1.388 |
| C5 |
C6 |
1.384 |
1.379 |
| C1 |
C6 |
1.385 |
1.389 |
| C1 |
O1 |
1.372 |
1.358 |
| O1 |
H2 |
0.950 |
0.967 |
| C6 |
H6 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.080 |
| C3 |
H4 |
1.080 |
1.080 |
| C2 |
H3 |
1.080 |
1.081 |
| C10 |
H8 |
1.100 |
1.090 |
| C10 |
H7 |
1.100 |
1.090 |
| N1 |
H1 |
1.000 |
0.970 |
| C17 |
H10 |
1.080 |
1.080 |
| C16 |
H161 |
1.100 |
1.090 |
| C16 |
H162 |
1.100 |
1.090 |
| C16 |
H163 |
1.100 |
1.090 |
| C12 |
H9 |
1.080 |
1.080 |
| C14 |
H143 |
1.100 |
1.090 |
| C14 |
H141 |
1.100 |
1.090 |
| C14 |
H142 |
1.100 |
1.089 |
Bond Angles for HK1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3 |
C15 |
C13 |
115.2 |
120.0 |
| C17 |
C15 |
C13 |
119.8 |
120.1 |
| C15 |
C17 |
H10 |
120.3 |
120.0 |
| N2 |
N1 |
H1 |
123.5 |
126.0 |
| C15 |
C13 |
O2 |
115.4 |
120.0 |
| C15 |
C13 |
C12 |
119.9 |
119.9 |
| C18 |
C11 |
C12 |
120.0 |
120.4 |
| C12 |
C13 |
O2 |
124.7 |
120.0 |
| C13 |
O2 |
C14 |
118.1 |
117.0 |
| C11 |
C12 |
C13 |
120.2 |
120.1 |
| C13 |
C12 |
H9 |
119.9 |
120.0 |
| O2 |
C14 |
H143 |
109.5 |
109.5 |
| O2 |
C14 |
H141 |
109.5 |
109.5 |
| O2 |
C14 |
H142 |
109.5 |
109.5 |
| C7 |
C9 |
C10 |
145.4 |
144.5 |
| C9 |
C10 |
H8 |
110.9 |
110.1 |
| C9 |
C10 |
H7 |
110.9 |
110.1 |
| C11 |
C12 |
H9 |
119.9 |
120.0 |
| C11 |
C10 |
H8 |
110.9 |
110.1 |
| C11 |
C10 |
H7 |
110.9 |
110.2 |
| C2 |
C3 |
H4 |
119.5 |
120.1 |
| C3 |
C2 |
H3 |
120.0 |
119.9 |
| C4 |
C5 |
H5 |
119.5 |
120.1 |
| C5 |
C6 |
H6 |
120.0 |
120.0 |
| C1 |
C6 |
H6 |
120.1 |
120.0 |
| C1 |
O1 |
H2 |
109.5 |
114.0 |
| H8 |
C10 |
H7 |
109.5 |
110.2 |
| H161 |
C16 |
H162 |
109.5 |
109.5 |
| H161 |
C16 |
H163 |
109.5 |
109.5 |
| H162 |
C16 |
H163 |
109.5 |
109.4 |
| H143 |
C14 |
H141 |
109.4 |
109.4 |
| H143 |
C14 |
H142 |
109.5 |
109.5 |
| H141 |
C14 |
H142 |
109.4 |
109.5 |
Torsion Angles for HK1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C16 |
O3 |
C15 |
C13 |
181.0 |
180.0 |
| C17 |
C15 |
O3 |
C13 |
180.8 |
180.0 |
| O3 |
C15 |
C17 |
H10 |
359.4 |
0.1 |
| O3 |
C15 |
C13 |
O2 |
358.3 |
359.9 |
| O3 |
C15 |
C13 |
C12 |
180.5 |
180.0 |
| O3 |
C15 |
C17 |
C13 |
179.2 |
180.0 |
| C17 |
C15 |
C13 |
O2 |
177.6 |
180.0 |
| C17 |
C15 |
C13 |
C12 |
359.7 |
0.0 |
| C17 |
C18 |
C11 |
C12 |
0.9 |
360.0 |
| C13 |
C15 |
C17 |
H10 |
180.2 |
180.0 |
| C12 |
C13 |
C15 |
O2 |
182.1 |
180.0 |
| C15 |
C13 |
O2 |
C14 |
184.5 |
180.0 |
| C11 |
C12 |
C13 |
C15 |
0.6 |
360.0 |
| C15 |
C13 |
C12 |
H9 |
180.6 |
180.0 |
| C8 |
C18 |
C11 |
C12 |
182.0 |
180.0 |
| C8 |
C9 |
C10 |
H8 |
122.3 |
119.1 |
| C8 |
C9 |
C10 |
H7 |
244.2 |
240.8 |
| C18 |
C11 |
C12 |
C13 |
359.1 |
0.0 |
| C18 |
C11 |
C12 |
H9 |
179.1 |
180.0 |
| C18 |
C11 |
C10 |
H8 |
237.3 |
240.9 |
| C18 |
C11 |
C10 |
H7 |
115.5 |
119.2 |
| C15 |
C13 |
O2 |
C12 |
182.3 |
180.0 |
| C11 |
C12 |
C13 |
O2 |
183.0 |
180.0 |
| O2 |
C13 |
C12 |
H9 |
3.0 |
0.1 |
| C13 |
O2 |
C14 |
H143 |
180.0 |
180.0 |
| C13 |
O2 |
C14 |
H141 |
300.0 |
300.0 |
| C13 |
O2 |
C14 |
H142 |
60.0 |
60.0 |
| C15 |
C13 |
C12 |
O2 |
177.6 |
180.0 |
| C12 |
C13 |
O2 |
C14 |
2.2 |
360.0 |
| C11 |
C12 |
C13 |
H9 |
180.0 |
180.0 |
| H143 |
C14 |
O2 |
H141 |
240.0 |
240.1 |
| H143 |
C14 |
O2 |
H142 |
120.1 |
120.0 |
| H141 |
C14 |
O2 |
H142 |
240.1 |
239.9 |
| C7 |
C9 |
C10 |
H8 |
304.9 |
299.1 |
| C7 |
C9 |
C10 |
H7 |
66.7 |
60.7 |
| C7 |
C4 |
C5 |
H5 |
356.8 |
359.9 |
| C11 |
C10 |
C9 |
H8 |
240.9 |
240.9 |
| C11 |
C10 |
C9 |
H7 |
119.1 |
119.2 |
| H8 |
C10 |
C9 |
H7 |
238.2 |
238.3 |
| C15 |
C13 |
C12 |
C11 |
0.6 |
360.0 |
| C13 |
C12 |
C11 |
H9 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H8 |
58.0 |
60.8 |
| C12 |
C11 |
C10 |
H7 |
296.2 |
299.1 |
| C9 |
C10 |
C11 |
H8 |
119.1 |
119.1 |
| C9 |
C10 |
C11 |
H7 |
240.9 |
240.9 |
| H8 |
C10 |
C11 |
H7 |
121.8 |
121.7 |
| C3 |
C4 |
C5 |
H5 |
180.2 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
179.6 |
179.9 |
| C2 |
C1 |
C6 |
H6 |
180.2 |
180.3 |
| C2 |
C1 |
O1 |
H2 |
180.0 |
269.7 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C6 |
C1 |
O1 |
H2 |
358.7 |
90.0 |
| H5 |
C5 |
C6 |
H6 |
359.7 |
360.0 |
| H4 |
C3 |
C2 |
H3 |
359.7 |
359.8 |
| H3 |
C2 |
C3 |
H4 |
359.7 |
359.8 |
| C9 |
C10 |
H8 |
H7 |
122.6 |
121.6 |
| C11 |
C10 |
H8 |
H7 |
237.4 |
238.3 |
| C9 |
C10 |
H7 |
H8 |
237.4 |
238.4 |
| C11 |
C10 |
H7 |
H8 |
122.6 |
121.7 |
| H10 |
C17 |
C15 |
C13 |
180.2 |
180.0 |
| H162 |
C16 |
H161 |
H163 |
120.0 |
119.9 |
| H161 |
C16 |
H162 |
H163 |
240.0 |
240.0 |
| H161 |
C16 |
H163 |
H162 |
120.0 |
120.0 |
| H9 |
C12 |
C13 |
O2 |
3.0 |
0.1 |
| C11 |
C12 |
H9 |
C13 |
180.0 |
180.0 |
| O2 |
C14 |
H143 |
H141 |
120.0 |
119.9 |
| O2 |
C14 |
H143 |
H142 |
240.0 |
240.0 |
| H141 |
C14 |
H143 |
H142 |
120.0 |
120.1 |
| O2 |
C14 |
H141 |
H143 |
240.0 |
240.1 |
| O2 |
C14 |
H141 |
H142 |
120.0 |
120.0 |
| H143 |
C14 |
H141 |
H142 |
240.0 |
240.0 |
| O2 |
C14 |
H142 |
H143 |
120.1 |
120.0 |
| O2 |
C14 |
H142 |
H141 |
240.0 |
240.0 |
| H143 |
C14 |
H142 |
H141 |
120.0 |
120.0 |