PDB Chemical Component HJB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HJB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5 |
C10 |
1.302 |
1.208 |
| O4 |
C10 |
1.279 |
1.342 |
| O3 |
B1 |
1.465 |
1.367 |
| C10 |
C9 |
1.530 |
1.507 |
| C3 |
C5 |
1.374 |
1.383 |
| C3 |
C2 |
1.356 |
1.378 |
| C1 |
O1 |
1.404 |
1.438 |
| C1 |
C2 |
1.457 |
1.511 |
| O1 |
B1 |
1.495 |
1.377 |
| C5 |
C6 |
1.388 |
1.383 |
| C2 |
C4 |
1.374 |
1.387 |
| C6 |
C7 |
1.395 |
1.384 |
| C4 |
B1 |
1.568 |
1.560 |
| C4 |
C7 |
1.408 |
1.377 |
| B1 |
O2 |
1.413 |
1.367 |
| C7 |
C8 |
1.508 |
1.506 |
| C8 |
C9 |
1.518 |
1.530 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
H4 |
1.080 |
1.080 |
| C6 |
H5 |
1.080 |
1.079 |
| O3 |
H6 |
0.950 |
0.967 |
| O2 |
H7 |
0.950 |
0.967 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H9 |
1.100 |
1.090 |
| C9 |
H10 |
1.100 |
1.090 |
| C9 |
H11 |
1.099 |
1.090 |
| O4 |
H12 |
0.950 |
0.967 |
Bond Angles for HJB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
B1 |
O3 |
106.2 |
110.1 |
| O3 |
B1 |
O2 |
110.5 |
110.3 |
| B1 |
O3 |
H6 |
109.5 |
114.0 |
| C10 |
C9 |
H10 |
108.4 |
109.5 |
| C10 |
C9 |
H11 |
108.4 |
109.4 |
| C3 |
C5 |
C6 |
120.0 |
120.1 |
| C5 |
C3 |
H3 |
121.0 |
120.1 |
| C3 |
C5 |
H4 |
120.0 |
119.9 |
| C3 |
C2 |
C4 |
124.8 |
120.0 |
| C2 |
C1 |
O1 |
99.6 |
106.5 |
| C1 |
O1 |
B1 |
120.4 |
106.1 |
| O1 |
C1 |
H1 |
111.9 |
110.1 |
| O1 |
C1 |
H2 |
111.9 |
110.1 |
| C1 |
C2 |
C4 |
113.9 |
106.4 |
| C2 |
C1 |
H1 |
111.9 |
110.0 |
| C2 |
C1 |
H2 |
111.9 |
110.1 |
| C5 |
C6 |
C7 |
121.4 |
120.0 |
| C6 |
C5 |
H4 |
120.0 |
119.9 |
| C5 |
C6 |
H5 |
119.3 |
119.9 |
| C2 |
C4 |
B1 |
110.5 |
106.2 |
| C2 |
C4 |
C7 |
117.5 |
120.2 |
| C4 |
C7 |
C6 |
118.3 |
119.8 |
| C6 |
C7 |
C8 |
119.9 |
120.1 |
| C7 |
C6 |
H5 |
119.3 |
120.0 |
| C7 |
C4 |
B1 |
132.0 |
133.6 |
| C4 |
B1 |
O2 |
121.0 |
110.1 |
| C4 |
C7 |
C8 |
121.8 |
120.1 |
| B1 |
O2 |
H7 |
109.5 |
114.0 |
| C7 |
C8 |
C9 |
118.3 |
109.5 |
| C7 |
C8 |
H8 |
107.2 |
109.5 |
| C7 |
C8 |
H9 |
107.2 |
109.5 |
| C9 |
C8 |
H8 |
107.2 |
109.5 |
| C9 |
C8 |
H9 |
107.2 |
109.4 |
| C8 |
C9 |
H10 |
108.4 |
109.5 |
| C8 |
C9 |
H11 |
108.4 |
109.4 |
| H1 |
C1 |
H2 |
109.5 |
110.1 |
| H8 |
C8 |
H9 |
109.5 |
109.4 |
| H10 |
C9 |
H11 |
109.5 |
109.5 |
Torsion Angles for HJB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5 |
C10 |
C9 |
H10 |
50.4 |
240.0 |
| O5 |
C10 |
C9 |
H11 |
169.2 |
120.0 |
| O4 |
C10 |
C9 |
H10 |
232.2 |
60.0 |
| O4 |
C10 |
C9 |
H11 |
351.0 |
300.0 |
| C1 |
O1 |
B1 |
O3 |
240.9 |
270.0 |
| C2 |
C4 |
B1 |
O3 |
117.2 |
100.9 |
| C7 |
C4 |
B1 |
O3 |
298.0 |
280.9 |
| C4 |
B1 |
O3 |
O2 |
133.0 |
121.8 |
| O3 |
B1 |
O2 |
H7 |
180.0 |
301.7 |
| C10 |
C9 |
C8 |
H8 |
166.7 |
60.0 |
| C10 |
C9 |
C8 |
H9 |
49.2 |
300.0 |
| C8 |
C9 |
C10 |
H10 |
239.4 |
120.0 |
| C8 |
C9 |
C10 |
H11 |
120.6 |
240.0 |
| H10 |
C9 |
C10 |
H11 |
241.2 |
120.0 |
| C5 |
C3 |
C2 |
C4 |
357.7 |
0.0 |
| C3 |
C5 |
C6 |
C7 |
1.4 |
359.9 |
| C6 |
C5 |
C3 |
H4 |
180.0 |
180.1 |
| C3 |
C5 |
C6 |
H5 |
181.4 |
179.9 |
| C3 |
C2 |
C1 |
O1 |
172.0 |
197.5 |
| C1 |
C2 |
C3 |
C4 |
184.0 |
180.1 |
| C3 |
C2 |
C1 |
H1 |
53.6 |
316.8 |
| C3 |
C2 |
C1 |
H2 |
290.4 |
78.3 |
| C3 |
C2 |
C4 |
B1 |
182.3 |
179.9 |
| C3 |
C2 |
C4 |
C7 |
1.6 |
360.0 |
| O1 |
C1 |
C2 |
C4 |
355.6 |
17.6 |
| C2 |
C1 |
O1 |
H1 |
241.6 |
119.2 |
| C2 |
C1 |
O1 |
H2 |
118.4 |
240.7 |
| H1 |
C1 |
O1 |
H2 |
236.7 |
121.5 |
| C3 |
C2 |
C1 |
C4 |
176.4 |
179.9 |
| C2 |
C1 |
O1 |
B1 |
9.8 |
330.4 |
| O1 |
C1 |
C2 |
H1 |
118.4 |
240.7 |
| O1 |
C1 |
C2 |
H2 |
241.6 |
119.3 |
| C1 |
C2 |
C4 |
B1 |
358.6 |
359.8 |
| C1 |
C2 |
C4 |
C7 |
177.9 |
179.9 |
| H1 |
C1 |
C2 |
H2 |
123.2 |
238.5 |
| O1 |
B1 |
O3 |
H6 |
180.0 |
296.5 |
| B1 |
O1 |
C1 |
H1 |
128.1 |
211.2 |
| B1 |
O1 |
C1 |
H2 |
251.4 |
89.7 |
| O1 |
B1 |
O2 |
H7 |
303.0 |
63.5 |
| C6 |
C5 |
C3 |
H3 |
180.7 |
180.0 |
| C3 |
C5 |
C6 |
H4 |
180.0 |
179.9 |
| C4 |
C7 |
C6 |
C5 |
358.0 |
0.0 |
| C5 |
C6 |
C7 |
C8 |
178.8 |
180.0 |
| C7 |
C6 |
C5 |
H5 |
180.0 |
180.0 |
| C4 |
C2 |
C1 |
O1 |
355.6 |
17.6 |
| C4 |
C2 |
C1 |
H1 |
237.2 |
136.9 |
| C4 |
C2 |
C1 |
H2 |
113.9 |
258.4 |
| C2 |
C4 |
C7 |
C6 |
0.6 |
360.0 |
| C7 |
C4 |
C2 |
B1 |
179.4 |
180.1 |
| C2 |
C4 |
B1 |
O2 |
244.1 |
222.8 |
| C2 |
C4 |
C7 |
C8 |
179.7 |
180.0 |
| C7 |
C6 |
C5 |
H4 |
181.4 |
180.0 |
| C5 |
C6 |
C7 |
H5 |
180.0 |
180.0 |
| C6 |
C7 |
C4 |
B1 |
179.8 |
180.1 |
| C4 |
C7 |
C6 |
C8 |
179.1 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
355.1 |
265.0 |
| C6 |
C7 |
C8 |
H8 |
116.4 |
25.0 |
| C6 |
C7 |
C8 |
H9 |
233.8 |
145.0 |
| O3 |
B1 |
C4 |
O2 |
233.1 |
238.2 |
| C4 |
B1 |
O3 |
H6 |
79.2 |
180.1 |
| C1 |
O1 |
B1 |
C4 |
349.8 |
29.0 |
| C2 |
C4 |
B1 |
C7 |
179.2 |
180.1 |
| B1 |
C4 |
C7 |
C6 |
179.8 |
180.1 |
| B1 |
C4 |
C7 |
C8 |
358.9 |
0.1 |
| C4 |
B1 |
O2 |
H7 |
55.1 |
180.0 |
| C5 |
C6 |
C7 |
C4 |
358.0 |
0.0 |
| C2 |
C4 |
C7 |
B1 |
180.8 |
179.9 |
| C6 |
C7 |
C4 |
C8 |
180.9 |
180.0 |
| C4 |
C7 |
C6 |
H5 |
178.0 |
180.1 |
| C7 |
C4 |
B1 |
O2 |
64.9 |
42.7 |
| C4 |
C7 |
C8 |
C9 |
176.0 |
85.0 |
| C4 |
C7 |
C8 |
H8 |
297.3 |
205.0 |
| C4 |
C7 |
C8 |
H9 |
54.7 |
325.0 |
| C4 |
B1 |
O2 |
O3 |
235.1 |
238.2 |
| O2 |
B1 |
O3 |
H6 |
306.2 |
58.3 |
| C1 |
O1 |
B1 |
O2 |
117.0 |
148.1 |
| C4 |
C7 |
C8 |
C6 |
180.9 |
180.0 |
| C8 |
C7 |
C6 |
H5 |
358.8 |
0.0 |
| C8 |
C7 |
C4 |
B1 |
358.9 |
0.1 |
| C9 |
C8 |
C7 |
H8 |
238.7 |
240.0 |
| C9 |
C8 |
C7 |
H9 |
121.3 |
120.0 |
| C7 |
C8 |
C9 |
H10 |
167.3 |
300.0 |
| C7 |
C8 |
C9 |
H11 |
48.6 |
60.0 |
| H8 |
C8 |
C7 |
H9 |
242.5 |
240.0 |
| C10 |
C9 |
C8 |
H10 |
120.6 |
240.0 |
| C10 |
C9 |
C8 |
H11 |
239.4 |
120.0 |
| C7 |
C8 |
C9 |
H8 |
121.3 |
120.0 |
| C7 |
C8 |
C9 |
H9 |
238.7 |
240.0 |
| H8 |
C8 |
C9 |
H9 |
117.5 |
119.9 |
| H10 |
C9 |
C8 |
H11 |
118.8 |
240.0 |
| C2 |
C1 |
H1 |
O1 |
110.8 |
243.0 |
| H1 |
C1 |
O1 |
B1 |
128.1 |
211.2 |
| O1 |
C1 |
H1 |
H2 |
124.6 |
238.5 |
| H1 |
C1 |
C2 |
C4 |
237.2 |
136.9 |
| C2 |
C1 |
H1 |
H2 |
235.4 |
121.5 |
| C2 |
C1 |
H2 |
O1 |
249.2 |
117.0 |
| H2 |
C1 |
O1 |
B1 |
251.4 |
89.7 |
| O1 |
C1 |
H2 |
H1 |
235.4 |
121.5 |
| H2 |
C1 |
C2 |
C4 |
113.9 |
258.4 |
| C2 |
C1 |
H2 |
H1 |
124.6 |
238.5 |
| H3 |
C3 |
C5 |
C6 |
180.7 |
180.0 |
| H3 |
C3 |
C5 |
H4 |
0.7 |
360.0 |
| H3 |
C3 |
C2 |
C4 |
177.7 |
180.0 |
| C3 |
C5 |
H4 |
C6 |
180.0 |
180.1 |
| H4 |
C5 |
C3 |
H3 |
0.7 |
360.0 |
| H4 |
C5 |
C6 |
C7 |
181.4 |
180.0 |
| H4 |
C5 |
C6 |
H5 |
1.4 |
360.0 |
| C5 |
C6 |
H5 |
C7 |
180.0 |
180.0 |
| H5 |
C6 |
C5 |
H4 |
1.4 |
360.0 |
| H5 |
C6 |
C7 |
C8 |
358.8 |
0.0 |
| H6 |
O3 |
B1 |
O2 |
306.2 |
58.3 |
| C7 |
C8 |
H8 |
C9 |
232.0 |
240.0 |
| C7 |
C8 |
H8 |
H9 |
116.0 |
120.0 |
| C9 |
C8 |
H8 |
H9 |
244.0 |
240.1 |
| H8 |
C8 |
C9 |
H10 |
46.1 |
180.0 |
| H8 |
C8 |
C9 |
H11 |
287.3 |
300.0 |
| C7 |
C8 |
H9 |
C9 |
128.0 |
120.0 |
| C7 |
C8 |
H9 |
H8 |
244.0 |
240.0 |
| C9 |
C8 |
H9 |
H8 |
116.0 |
120.0 |
| H9 |
C8 |
C9 |
H10 |
288.6 |
60.1 |
| H9 |
C8 |
C9 |
H11 |
169.9 |
180.1 |
| C10 |
C9 |
H10 |
H11 |
118.1 |
240.0 |
| H10 |
C9 |
C8 |
H8 |
46.1 |
180.0 |
| H10 |
C9 |
C8 |
H9 |
288.6 |
60.1 |
| C8 |
C9 |
H10 |
H11 |
241.9 |
120.0 |
| C10 |
C9 |
H11 |
H10 |
241.9 |
120.0 |
| H11 |
C9 |
C8 |
H8 |
287.3 |
300.0 |
| H11 |
C9 |
C8 |
H9 |
169.9 |
180.1 |
| C8 |
C9 |
H11 |
H10 |
118.1 |
240.0 |