PDB Chemical Component HIP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HIP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.493 |
1.469 |
| N |
H |
0.974 |
1.009 |
| N |
H2 |
1.019 |
1.009 |
| CA |
CB |
1.546 |
1.530 |
| CA |
C |
1.545 |
1.507 |
| CA |
HA |
1.082 |
1.089 |
| CB |
CG |
1.507 |
1.507 |
| CB |
HB2 |
1.081 |
1.089 |
| CB |
HB3 |
1.072 |
1.091 |
| CG |
CD2 |
1.369 |
1.347 |
| CG |
ND1 |
1.395 |
1.368 |
| CD2 |
NE2 |
1.385 |
1.341 |
| CD2 |
HD2 |
1.073 |
1.080 |
| NE2 |
CE1 |
1.331 |
1.305 |
| NE2 |
HE2 |
0.980 |
0.970 |
| CE1 |
ND1 |
1.347 |
1.350 |
| CE1 |
HE1 |
1.080 |
1.080 |
| ND1 |
P |
1.482 |
1.640 |
| P |
O1P |
1.480 |
1.480 |
| P |
O2P |
1.481 |
1.610 |
| P |
O3P |
1.478 |
1.611 |
| O2P |
HOP2 |
0.949 |
0.967 |
| O3P |
HOP3 |
0.949 |
0.967 |
| C |
O |
1.216 |
1.208 |
| C |
OXT |
1.315 |
1.343 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for HIP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
120.1 |
106.7 |
| CA |
N |
H2 |
112.0 |
106.7 |
| N |
CA |
CB |
110.0 |
109.5 |
| N |
CA |
C |
110.1 |
109.4 |
| N |
CA |
HA |
108.0 |
109.5 |
| H |
N |
H2 |
74.2 |
106.7 |
| CB |
CA |
C |
112.5 |
109.5 |
| CB |
CA |
HA |
108.3 |
109.5 |
| CA |
CB |
CG |
112.3 |
109.5 |
| CA |
CB |
HB2 |
108.9 |
109.5 |
| CA |
CB |
HB3 |
108.9 |
109.5 |
| C |
CA |
HA |
107.9 |
109.5 |
| CA |
C |
O |
120.4 |
120.0 |
| CA |
C |
OXT |
118.7 |
120.0 |
| CG |
CB |
HB2 |
109.1 |
109.5 |
| CG |
CB |
HB3 |
108.6 |
109.4 |
| CB |
CG |
CD2 |
132.2 |
126.6 |
| CB |
CG |
ND1 |
121.9 |
126.6 |
| HB2 |
CB |
HB3 |
109.0 |
109.5 |
| CD2 |
CG |
ND1 |
105.9 |
106.8 |
| CG |
CD2 |
NE2 |
109.7 |
108.0 |
| CG |
CD2 |
HD2 |
125.2 |
125.9 |
| CG |
ND1 |
CE1 |
107.0 |
107.3 |
| CG |
ND1 |
P |
125.2 |
126.4 |
| NE2 |
CD2 |
HD2 |
125.1 |
126.0 |
| CD2 |
NE2 |
CE1 |
105.6 |
109.3 |
| CD2 |
NE2 |
HE2 |
127.2 |
125.4 |
| CE1 |
NE2 |
HE2 |
127.2 |
125.4 |
| NE2 |
CE1 |
ND1 |
111.8 |
108.7 |
| NE2 |
CE1 |
HE1 |
124.1 |
125.6 |
| ND1 |
CE1 |
HE1 |
124.1 |
125.7 |
| CE1 |
ND1 |
P |
124.7 |
126.4 |
| ND1 |
P |
O1P |
110.0 |
109.5 |
| ND1 |
P |
O2P |
110.2 |
109.5 |
| ND1 |
P |
O3P |
102.2 |
109.4 |
| O1P |
P |
O2P |
110.2 |
109.5 |
| O1P |
P |
O3P |
111.9 |
109.4 |
| O2P |
P |
O3P |
112.1 |
109.5 |
| P |
O2P |
HOP2 |
110.2 |
106.8 |
| P |
O3P |
HOP3 |
102.2 |
106.7 |
| O |
C |
OXT |
120.9 |
120.0 |
| C |
OXT |
HXT |
118.6 |
120.0 |
Torsion Angles for HIP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
275.9 |
246.2 |
| CB |
CA |
N |
C |
235.5 |
240.0 |
| CB |
CA |
N |
HA |
118.0 |
120.0 |
| N |
CA |
CB |
CG |
71.1 |
294.9 |
| N |
CA |
CB |
HB2 |
310.1 |
55.0 |
| N |
CA |
CB |
HB3 |
191.4 |
175.0 |
| C |
CA |
N |
HA |
242.5 |
240.0 |
| N |
CA |
C |
O |
35.4 |
340.0 |
| N |
CA |
C |
OXT |
213.0 |
160.1 |
| CA |
N |
H |
H2 |
106.7 |
113.8 |
| H |
N |
CA |
CB |
330.7 |
300.1 |
| H |
N |
CA |
C |
95.2 |
60.0 |
| H |
N |
CA |
HA |
212.7 |
180.0 |
| CA |
N |
H2 |
H |
243.3 |
246.2 |
| H2 |
N |
CA |
CB |
54.8 |
53.9 |
| H2 |
N |
CA |
C |
179.2 |
173.8 |
| H2 |
N |
CA |
HA |
296.8 |
293.8 |
| CB |
CA |
N |
H |
330.7 |
300.1 |
| CB |
CA |
N |
H2 |
54.8 |
53.9 |
| N |
CA |
CB |
C |
123.1 |
119.9 |
| N |
CA |
CB |
HA |
242.2 |
240.0 |
| C |
CA |
CB |
HA |
119.1 |
120.0 |
| CB |
CA |
C |
O |
158.4 |
99.9 |
| CB |
CA |
C |
OXT |
336.1 |
280.0 |
| CG |
CB |
CA |
HB2 |
120.9 |
240.0 |
| CG |
CB |
CA |
HB3 |
239.7 |
119.9 |
| CA |
CB |
CG |
CD2 |
306.7 |
85.0 |
| CA |
CB |
CG |
ND1 |
128.7 |
264.8 |
| HB2 |
CB |
CA |
HB3 |
118.8 |
240.0 |
| C |
CA |
N |
H |
95.2 |
60.0 |
| C |
CA |
N |
H2 |
179.2 |
173.8 |
| N |
CA |
C |
CB |
237.0 |
240.0 |
| N |
CA |
C |
HA |
117.6 |
120.0 |
| CB |
CA |
C |
HA |
240.6 |
240.0 |
| C |
CA |
CB |
CG |
308.0 |
175.0 |
| C |
CA |
CB |
HB2 |
187.1 |
295.0 |
| C |
CA |
CB |
HB3 |
68.3 |
55.1 |
| O |
C |
CA |
OXT |
182.3 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
212.7 |
180.0 |
| HA |
CA |
N |
H2 |
296.8 |
293.8 |
| N |
CA |
HA |
CB |
119.1 |
120.0 |
| N |
CA |
HA |
C |
241.1 |
240.0 |
| CB |
CA |
HA |
C |
122.0 |
120.0 |
| HA |
CA |
CB |
CG |
188.8 |
55.0 |
| HA |
CA |
CB |
HB2 |
67.9 |
175.0 |
| HA |
CA |
CB |
HB3 |
309.1 |
295.0 |
| HA |
CA |
C |
O |
277.8 |
220.0 |
| HA |
CA |
C |
OXT |
95.5 |
40.1 |
| CG |
CB |
CA |
C |
308.0 |
175.0 |
| CG |
CB |
CA |
HA |
188.8 |
55.0 |
| CA |
CB |
CG |
HB2 |
239.2 |
120.1 |
| CA |
CB |
CG |
HB3 |
120.4 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
241.3 |
120.0 |
| CD2 |
CG |
CB |
ND1 |
178.0 |
180.2 |
| CB |
CG |
CD2 |
NE2 |
181.7 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
1.1 |
0.0 |
| CB |
CG |
ND1 |
CE1 |
178.5 |
179.9 |
| CB |
CG |
ND1 |
P |
17.6 |
0.1 |
| HB2 |
CB |
CA |
C |
187.1 |
295.0 |
| HB2 |
CB |
CA |
HA |
67.9 |
175.0 |
| CA |
CB |
HB2 |
CG |
122.9 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
241.3 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
118.5 |
240.0 |
| HB2 |
CB |
CG |
CD2 |
67.5 |
325.0 |
| HB2 |
CB |
CG |
ND1 |
249.6 |
144.7 |
| HB3 |
CB |
CA |
C |
68.3 |
55.1 |
| HB3 |
CB |
CA |
HA |
309.1 |
295.0 |
| CA |
CB |
HB3 |
CG |
237.5 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
118.7 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
241.2 |
120.0 |
| HB3 |
CB |
CG |
CD2 |
186.3 |
205.0 |
| HB3 |
CB |
CG |
ND1 |
8.3 |
24.8 |
| CD2 |
CG |
CB |
HB2 |
67.5 |
325.0 |
| CD2 |
CG |
CB |
HB3 |
186.3 |
205.0 |
| CB |
CG |
CD2 |
ND1 |
181.8 |
179.8 |
| CD2 |
CG |
ND1 |
CE1 |
0.1 |
359.7 |
| CD2 |
CG |
ND1 |
P |
199.2 |
179.9 |
| NE2 |
CD2 |
CG |
HD2 |
180.7 |
180.0 |
| CG |
CD2 |
NE2 |
CE1 |
360.0 |
0.0 |
| CG |
CD2 |
NE2 |
HE2 |
180.0 |
180.0 |
| ND1 |
CG |
CB |
HB2 |
249.6 |
144.7 |
| ND1 |
CG |
CB |
HB3 |
8.3 |
24.8 |
| CB |
CG |
ND1 |
CD2 |
178.4 |
180.2 |
| ND1 |
CG |
CD2 |
NE2 |
360.0 |
0.2 |
| ND1 |
CG |
CD2 |
HD2 |
179.3 |
180.2 |
| NE2 |
CE1 |
ND1 |
CG |
359.9 |
0.3 |
| CG |
ND1 |
CE1 |
HE1 |
179.9 |
180.2 |
| CE1 |
ND1 |
CG |
P |
160.9 |
179.8 |
| CG |
ND1 |
P |
O1P |
148.8 |
149.6 |
| CG |
ND1 |
P |
O2P |
27.0 |
269.7 |
| CG |
ND1 |
P |
O3P |
267.8 |
29.7 |
| NE2 |
CD2 |
CG |
ND1 |
360.0 |
0.2 |
| CG |
CD2 |
NE2 |
HD2 |
179.3 |
180.0 |
| CE1 |
NE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CD2 |
NE2 |
CE1 |
ND1 |
0.1 |
359.8 |
| CD2 |
NE2 |
CE1 |
HE1 |
180.1 |
180.0 |
| HD2 |
CD2 |
CG |
ND1 |
179.3 |
180.2 |
| CG |
CD2 |
HD2 |
NE2 |
180.8 |
180.0 |
| HD2 |
CD2 |
NE2 |
CE1 |
180.7 |
180.0 |
| HD2 |
CD2 |
NE2 |
HE2 |
0.6 |
0.0 |
| CG |
ND1 |
CE1 |
NE2 |
359.9 |
0.3 |
| CE1 |
NE2 |
CD2 |
HD2 |
180.7 |
180.0 |
| CD2 |
NE2 |
CE1 |
HE2 |
180.0 |
180.0 |
| ND1 |
CE1 |
NE2 |
HE1 |
180.0 |
179.8 |
| NE2 |
CE1 |
ND1 |
P |
160.9 |
180.1 |
| HE2 |
NE2 |
CD2 |
HD2 |
0.6 |
0.0 |
| CD2 |
NE2 |
HE2 |
CE1 |
180.0 |
180.0 |
| HE2 |
NE2 |
CE1 |
ND1 |
180.1 |
179.8 |
| HE2 |
NE2 |
CE1 |
HE1 |
0.1 |
359.9 |
| CG |
ND1 |
CE1 |
P |
199.0 |
180.2 |
| ND1 |
CE1 |
NE2 |
HE2 |
180.1 |
179.8 |
| NE2 |
CE1 |
ND1 |
HE1 |
180.0 |
180.2 |
| CE1 |
ND1 |
P |
O1P |
351.1 |
329.9 |
| CE1 |
ND1 |
P |
O2P |
229.4 |
90.0 |
| CE1 |
ND1 |
P |
O3P |
110.1 |
210.0 |
| HE1 |
CE1 |
NE2 |
HE2 |
0.1 |
359.9 |
| NE2 |
CE1 |
HE1 |
ND1 |
180.0 |
179.8 |
| HE1 |
CE1 |
ND1 |
P |
340.9 |
359.9 |
| CG |
ND1 |
P |
CE1 |
157.6 |
179.7 |
| P |
ND1 |
CE1 |
HE1 |
340.9 |
359.9 |
| O1P |
P |
ND1 |
O2P |
121.7 |
239.9 |
| O1P |
P |
ND1 |
O3P |
241.0 |
119.9 |
| O2P |
P |
ND1 |
O3P |
119.3 |
240.0 |
| ND1 |
P |
O2P |
HOP2 |
180.1 |
60.0 |
| ND1 |
P |
O3P |
HOP3 |
180.0 |
180.0 |
| ND1 |
P |
O1P |
O2P |
238.2 |
120.1 |
| ND1 |
P |
O1P |
O3P |
112.9 |
240.1 |
| O2P |
P |
O1P |
O3P |
234.6 |
120.0 |
| O1P |
P |
O2P |
HOP2 |
58.4 |
180.0 |
| O1P |
P |
O3P |
HOP3 |
297.7 |
60.0 |
| ND1 |
P |
O2P |
O1P |
121.6 |
239.9 |
| ND1 |
P |
O2P |
O3P |
246.9 |
120.0 |
| O1P |
P |
O2P |
O3P |
125.3 |
240.0 |
| O2P |
P |
O3P |
HOP3 |
62.0 |
300.0 |
| ND1 |
P |
O3P |
O1P |
242.3 |
120.0 |
| ND1 |
P |
O3P |
O2P |
118.0 |
240.0 |
| O1P |
P |
O3P |
O2P |
235.7 |
120.0 |
| O3P |
P |
O2P |
HOP2 |
293.2 |
300.0 |
| HOP2 |
O2P |
P |
O3P |
293.2 |
300.0 |
| O |
C |
CA |
HA |
277.8 |
220.0 |
| CA |
C |
O |
OXT |
177.6 |
180.1 |
| O |
C |
OXT |
HXT |
357.7 |
0.1 |
| OXT |
C |
CA |
HA |
95.5 |
40.1 |
| CA |
C |
OXT |
O |
182.3 |
179.9 |