PDB Chemical Component HHZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HHZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O9 P2 1.525 1.610
O8 P2 1.537 1.611
P2 O10 1.493 1.480
P2 O7 1.594 1.609
O6 P1 1.479 1.481
O3 P 1.478 1.480
O7 P1 1.591 1.610
P1 O5 1.518 1.610
P1 O4 1.589 1.610
C8 O1 1.442 1.429
C8 C7 1.507 1.530
P O4 1.589 1.610
P O1 1.598 1.610
P O2 1.516 1.610
O C6 1.427 1.429
C7 C6 1.522 1.545
C7 O11 1.443 1.445
C6 C5 1.521 1.545
O11 C4 1.425 1.444
C5 C4 1.522 1.545
C4 N1 1.455 1.464
C3 N1 1.372 1.368
C3 C2 1.372 1.358
N1 C9 1.377 1.370
C2 C11 1.433 1.431
C2 C1 1.438 1.470
C11 C12 1.193 1.175
C9 N2 1.337 1.333
C9 C1 1.410 1.406
C12 C13 1.467 1.471
N2 C10 1.335 1.316
C13 N4 1.454 1.466
C1 C 1.418 1.401
C10 N3 1.334 1.320
N4 C14 1.331 1.348
C N3 1.350 1.330
C N 1.336 1.383
O12 C14 1.228 1.213
C14 C15 1.511 1.506
C15 O13 1.415 1.429
O13 C16 1.418 1.429
O14 C17 1.417 1.429
C16 C17 1.495 1.530
O5 H12 0.950 0.967
C7 H8 1.100 1.090
C8 H9 1.100 1.090
C8 H10 1.100 1.089
C17 H24 1.100 1.090
C17 H23 1.100 1.090
C13 H16 1.100 1.089
C13 H17 1.100 1.090
C10 H15 1.080 1.080
C6 H6 1.100 1.090
C5 H5 1.099 1.090
C5 H4 1.100 1.090
N4 H18 0.999 0.970
C3 H2 1.080 1.080
O2 H11 0.950 0.967
N H1 1.000 0.971
N H 1.000 0.969
O H7 0.950 0.967
C15 H20 1.100 1.090
C15 H19 1.100 1.090
C16 H21 1.100 1.090
C16 H22 1.100 1.090
C4 H3 1.100 1.091
O14 H25 0.950 0.967
O8 H13 0.950 0.967
O9 H14 0.950 0.967

Bond Angles for HHZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O8 P2 O9 109.0 109.5
P2 O9 H14 109.5 114.0
P2 O8 H13 109.5 114.0
O6 P1 O7 111.8 109.5
O3 P O4 111.4 109.5
P1 O5 H12 109.5 114.0
O1 C8 H9 109.4 109.5
O1 C8 H10 109.5 109.5
C8 C7 C6 115.2 110.4
C8 C7 O11 110.2 110.3
C8 C7 H8 108.7 110.4
P O2 H11 109.5 114.0
O C6 H6 112.0 110.6
C6 C7 O11 104.6 104.8
C7 C6 C5 101.4 104.1
C6 C7 H8 108.5 110.4
C7 C6 H6 110.6 110.5
C7 O11 C4 109.6 105.3
O11 C7 H8 109.5 110.4
C6 C5 C4 102.5 104.1
C5 C6 H6 110.6 110.5
C6 C5 H5 111.2 110.6
C6 C5 H4 111.2 110.5
O11 C4 H3 110.0 110.5
C5 C4 N1 113.2 110.4
C4 C5 H5 111.2 110.5
C4 C5 H4 111.2 110.5
C5 C4 H3 108.7 110.3
C3 N1 C4 125.2 124.8
C4 N1 C9 126.2 124.8
N1 C4 H3 109.6 110.3
C2 C3 N1 110.1 109.6
C3 N1 C9 108.3 110.3
N1 C3 H2 124.9 125.1
C3 C2 C1 106.8 106.4
C2 C3 H2 125.0 125.3
N1 C9 N2 125.4 134.1
C2 C1 C 137.9 135.0
C11 C12 C13 176.6 180.0
C12 C13 N4 113.0 109.5
C12 C13 H16 108.6 109.5
C12 C13 H17 108.6 109.5
N2 C10 N3 128.7 122.7
N2 C10 H15 115.6 118.6
C13 N4 C14 121.5 120.0
N4 C13 H16 108.5 109.5
N4 C13 H17 108.6 109.4
C13 N4 H18 119.3 120.0
C1 C N3 118.5 118.3
C1 C N 123.4 120.8
C10 N3 C 118.8 121.0
N3 C10 H15 115.6 118.7
N4 C14 C15 116.9 120.0
C N H1 109.5 120.0
C N H 109.5 120.0
C14 C15 O13 112.3 109.5
C14 C15 H20 108.7 109.5
C14 C15 H19 108.8 109.5
C15 O13 C16 113.7 114.0
O13 C15 H20 108.8 109.5
O13 C15 H19 108.8 109.4
O13 C16 H21 109.6 109.4
O13 C16 H22 109.6 109.5
O14 C17 H24 108.9 109.5
O14 C17 H23 108.9 109.5
C16 C17 H24 108.9 109.5
C16 C17 H23 108.9 109.5
H9 C8 H10 109.5 109.5
H24 C17 H23 109.5 109.5
H16 C13 H17 109.5 109.4
H5 C5 H4 109.5 110.5
H1 N H 109.5 120.0
H20 C15 H19 109.5 109.4
H21 C16 H22 109.4 109.5

Torsion Angles for HHZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O9 P2 O8 H13 126.4 300.0
O8 P2 O9 H14 233.5 300.0
O6 P1 O5 H12 360.0 180.0
O3 P O2 H11 0.0 180.0
O7 P1 O5 H12 126.3 300.0
O4 P1 O5 H12 234.6 60.0
O1 C8 C7 C6 54.7 185.0
O1 C8 C7 O11 296.7 69.6
O1 C8 C7 H8 176.7 307.3
H9 C8 O1 H10 240.0 120.0
C6 C7 C8 O11 118.0 115.4
C8 C7 C6 C5 202.1 217.2
C6 C7 C8 H8 238.1 237.7
C8 C7 C6 H6 319.5 335.8
C8 C7 O11 C4 147.2 159.3
O11 C7 C8 H8 120.0 122.3
O4 P O2 H11 235.5 60.0
P O1 C8 H9 341.0 60.0
P O1 C8 H10 101.0 300.0
O C6 C7 O11 205.6 217.4
O C6 C7 H8 322.4 336.2
C7 C6 O H6 235.9 237.3
O C6 C5 C4 154.1 118.6
C5 C6 O H6 124.0 122.7
O C6 C5 H5 273.0 237.3
O C6 C5 H4 35.3 360.0
C8 C7 C6 O11 238.8 241.2
C8 C7 C6 H8 122.0 122.3
O C6 C7 H6 124.9 122.7
C6 C7 O11 C4 22.8 40.5
O11 C7 C6 H8 243.2 241.2
C7 C6 C5 C4 36.3 360.0
C5 C6 C7 H6 242.7 241.4
C7 C6 C5 H5 155.2 118.7
C7 C6 C5 H4 277.5 241.3
C8 C7 O11 C6 124.4 118.8
C8 C7 O11 H8 240.5 237.7
O11 C7 C6 C5 323.3 336.0
C6 C7 O11 H8 116.1 118.8
O11 C7 C6 H6 80.6 94.7
C7 O11 C4 H3 118.7 78.3
O C6 C5 H6 235.1 237.3
C5 C6 C7 O11 323.3 336.0
C5 C6 C7 H8 80.1 94.9
C7 C6 C5 H6 117.3 118.6
C6 C5 C4 N1 95.4 142.8
C4 C5 C6 H5 241.1 241.3
C4 C5 C6 H4 118.9 118.6
C6 C5 C4 H3 217.3 265.1
H5 C5 C6 H4 237.7 237.3
C4 O11 C7 H8 266.7 281.7
O11 C4 C5 H5 217.2 265.3
O11 C4 C5 H4 94.9 142.6
C5 C4 O11 H3 242.2 241.1
N1 C4 O11 H3 119.8 122.3
C7 O11 C4 C5 0.9 319.5
C4 C5 C6 H6 279.0 241.4
C6 C5 C4 H5 118.9 118.7
C6 C5 C4 H4 241.1 241.4
O11 C4 C5 H3 118.7 118.9
C3 N1 C4 C5 272.3 265.0
C5 C4 N1 C9 85.2 85.1
N1 C4 C5 H3 238.0 237.8
H5 C5 C4 H4 122.2 122.6
C7 O11 C4 N1 238.5 200.7
O11 C4 N1 H3 240.0 237.6
N1 C4 C5 H5 336.5 24.1
N1 C4 C5 H4 214.2 261.5
C5 C4 N1 H3 121.5 122.2
C2 C3 N1 C4 172.7 180.1
C3 N1 C4 C9 187.0 179.9
C4 N1 C3 H2 352.7 0.1
C4 N1 C9 N2 6.9 359.9
C5 C4 N1 C3 272.3 265.0
C4 N1 C3 C9 174.0 180.1
C3 N1 C4 H3 150.8 142.7
N1 C3 C2 C1 0.8 0.5
C2 C3 N1 H2 180.0 180.0
C3 N1 C9 N2 180.9 180.0
C2 C3 N1 C9 358.7 360.0
N1 C3 C2 H2 180.0 180.0
C3 C2 C1 C 180.4 180.6
C3 N1 C9 C4 174.0 180.1
C9 N1 C4 H3 323.8 322.8
C9 N1 C3 H2 178.7 180.0
C1 C2 C3 N1 0.8 0.5
C1 C2 C3 H2 180.8 180.4
C2 C1 C N3 180.1 179.0
C2 C1 C N 0.7 358.5
C11 C12 C13 N4 296.5 75.6
C11 C12 C13 H16 57.0 195.6
C11 C12 C13 H17 175.9 315.6
C9 N2 C10 N3 0.1 360.0
C9 N2 C10 H15 180.1 179.8
C3 N1 C9 C1 1.3 359.6
C9 C1 C N3 0.5 0.5
C12 C13 N4 C14 80.1 180.0
N4 C13 C12 H16 239.5 240.0
N4 C13 C12 H17 120.5 120.0
C12 C13 N4 H18 260.1 360.0
H16 C13 C12 H17 241.0 240.0
N2 C10 N3 C 359.9 359.8
N3 C10 N2 H15 180.0 180.2
C12 C13 N4 H16 120.5 120.0
C12 C13 N4 H17 239.5 240.0
C13 N4 C14 C15 184.8 180.0
H16 C13 N4 H17 119.0 119.9
C10 N3 C C1 359.8 0.0
C1 C N H1 179.4 0.0
C1 C N H 299.5 180.0
N2 C10 N3 H15 180.0 179.8
C1 C N3 C10 359.8 0.0
C14 N4 C13 H16 319.6 60.0
C14 N4 C13 H17 200.6 300.0
C13 N4 C14 H18 180.0 180.0
N4 C14 C15 O13 289.1 180.0
N4 C14 C15 H20 49.6 300.0
N4 C14 C15 H19 168.7 60.0
C1 C N3 N 180.5 179.5
C N3 C10 H15 179.9 180.0
N3 C N H1 0.0 179.5
N3 C N H 120.0 359.4
C1 C N N3 179.4 180.5
C10 N3 C N 179.2 180.5
H1 N C H 240.0 180.1
O12 C14 C15 O13 110.2 359.9
O12 C14 C15 H20 230.6 120.0
O12 C14 C15 H19 349.8 240.0
C14 C15 O13 C16 111.5 180.0
O13 C15 C14 H20 239.6 240.0
O13 C15 C14 H19 120.4 120.0
H20 C15 C14 H19 240.8 240.0
C14 C15 O13 H20 120.4 120.1
C14 C15 O13 H19 239.6 240.0
C15 O13 C16 H21 296.7 60.0
C15 O13 C16 H22 56.8 300.1
H20 C15 O13 H19 119.2 119.9
C16 O13 C15 H20 351.1 59.9
C16 O13 C15 H19 231.9 300.0
O13 C16 C17 H24 14.0 185.0
O13 C16 C17 H23 254.7 305.0
H21 C16 O13 H22 239.8 120.0
C16 C17 O14 H24 239.7 120.0
C16 C17 O14 H23 120.3 240.0
H24 C17 O14 H23 240.7 120.0
O14 C17 C16 H24 120.4 240.0
O14 C17 C16 H23 239.7 120.0
H24 C17 C16 H23 119.3 240.0
C8 C7 H8 C6 234.1 237.7
C8 C7 H8 O11 120.5 122.3
C6 C7 H8 O11 246.4 244.6
H8 C7 C6 C5 80.1 94.9
H8 C7 C6 H6 197.5 213.5
H8 C7 O11 C4 266.7 281.7
O1 C8 H9 H10 120.0 240.0
H9 C8 C7 C6 294.7 305.0
H9 C8 C7 O11 176.7 189.6
H9 C8 C7 H8 56.7 67.3
O1 C8 H10 H9 240.0 120.0
H10 C8 C7 C6 174.7 65.0
H10 C8 C7 O11 56.7 309.6
H10 C8 C7 H8 296.7 187.3
O14 C17 H24 H23 119.0 240.0
C16 C17 H24 H23 241.0 120.0
O14 C17 H23 H24 241.0 120.1
C16 C17 H23 H24 119.0 240.0
C12 C13 H16 N4 236.8 240.0
C12 C13 H16 H17 118.4 120.0
H16 C13 N4 C14 319.6 60.0
N4 C13 H16 H17 241.6 240.1
H16 C13 N4 H18 139.6 239.9
C12 C13 H17 N4 123.2 120.0
C12 C13 H17 H16 241.6 240.0
H17 C13 N4 C14 200.6 300.0
N4 C13 H17 H16 118.4 120.0
H17 C13 N4 H18 20.6 120.0
N2 C10 H15 N3 180.0 180.2
H15 C10 N3 C 179.9 180.0
H6 C6 C7 O11 80.6 94.7
C7 C6 H6 C5 248.5 245.4
H6 C6 C7 H8 197.5 213.5
H6 C6 C5 C4 279.0 241.4
H6 C6 C5 H5 37.9 0.0
H6 C6 C5 H4 160.1 122.7
C6 C5 H5 C4 246.5 245.3
H5 C5 C6 H6 37.9 0.0
C6 C5 H5 H4 123.3 122.7
H5 C5 C4 N1 336.5 24.1
C4 C5 H5 H4 236.8 237.4
H5 C5 C4 H3 98.5 146.3
C6 C5 H4 C4 113.5 114.6
H4 C5 C6 H6 160.1 122.7
C6 C5 H4 H5 236.7 237.3
H4 C5 C4 N1 214.2 261.5
C4 C5 H4 H5 123.2 122.6
H4 C5 C4 H3 336.2 23.7
C13 N4 H18 C14 180.0 180.0
H18 N4 C13 H16 139.6 239.9
H18 N4 C13 H17 20.6 120.0
H18 N4 C14 C15 4.8 360.0
H2 C3 N1 C4 352.7 0.1
C2 C3 H2 N1 180.0 180.0
H2 C3 N1 C9 178.7 180.0
H2 C3 C2 C1 180.8 180.4
C N H1 H 120.0 179.9
C N H H1 240.0 180.1
H7 O C6 H6 304.1 302.7
C14 C15 H20 O13 237.5 239.9
C14 C15 H20 H19 118.7 120.0
H20 C15 O13 C16 351.1 59.9
O13 C15 H20 H19 241.2 240.1
C14 C15 H19 O13 122.6 120.0
C14 C15 H19 H20 241.3 240.0
H19 C15 O13 C16 231.9 300.0
O13 C15 H19 H20 118.7 119.9
O13 C16 H21 H22 120.3 240.0
H21 C16 C17 H24 254.1 305.0
H21 C16 C17 H23 134.8 65.0
O13 C16 H22 H21 239.7 119.9
H22 C16 C17 H24 133.9 65.0
H22 C16 C17 H23 14.6 185.0
C5 C4 H3 N1 235.8 237.8
H3 C4 C5 H5 98.5 146.3
H3 C4 C5 H4 336.2 23.7
H3 C4 N1 C9 323.8 322.8
H25 O14 C17 H24 300.3 59.9
H25 O14 C17 H23 59.7 299.9
H13 O8 P2 O9 126.4 300.0