PDB Chemical Component HGV

Ideal Model

Chemical Description

Name 2'-deoxy-5'-O-[(R)-hydroxy({(R)-hydroxy[(1S)-1-phosphonoethyl]phosphoryl}oxy)phosphoryl]adenosine
Formula C12 H20 N5 O11 P3
Formal charge 0
Molecular weight 503.235 g/mol
Component type NON-POLYMER

Chemical features

Atom count 51
Chiral atom count 4
Chiral atoms C3B C4' C1' C3'
Bond count 53
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-O-[(R)-hydroxy({(R)-hydroxy[(1S)-1-phosphonoethyl]phosphoryl}oxy)phosphoryl]adenosine
Systematic name (OpenEye OEToolkits) [(1~{S})-1-[[[(2~{R},3~{S},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]ethyl]phosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@@H]([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3c(N)ncnc23
SMILES (CACTVS) C[CH]([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH](C[CH]1O)n2cnc3c(N)ncnc23
Stereo SMILES (OpenEye) C[C@@H](P(=O)(O)O)P(=O)(O)OP(=O)(O)OC[C@@H]1[C@H](C[C@@H](O1)n2cnc3c2ncnc3N)O
InChI descriptor InChI=1S/C12H20N5O11P3/c1-6(29(19,20)21)30(22,23)28-31(24,25)26-3-8-7(18)2-9(27-8)17-5-16-10-11(13)14-4-15-12(10)17/h4-9,18H,2-3H2,1H3,(H,22,23)(H,24,25)(H2,13,14,15)(H2,19,20,21)/t6-,7-,8+,9+/m0/s1
InChIKey descriptor XGUYUUUETUJOLT-RBXMUDONSA-N

Status Information

Last modified 2018-08-17
Created 2018-07-02
Release status REL
Model PDB code 6CR6
Processing site RCSB