PDB Chemical Component HGH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HGH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C1 |
1.344 |
1.385 |
| N5 |
C1 |
1.342 |
1.323 |
| N5 |
C13 |
1.338 |
1.329 |
| C1 |
N2 |
1.360 |
1.327 |
| C13 |
N4 |
1.356 |
1.372 |
| C13 |
C11 |
1.408 |
1.406 |
| N2 |
C2 |
1.329 |
1.327 |
| N4 |
C12 |
1.367 |
1.364 |
| C4 |
C5 |
1.370 |
1.381 |
| C4 |
C3 |
1.363 |
1.389 |
| C11 |
C2 |
1.371 |
1.403 |
| C11 |
N3 |
1.368 |
1.356 |
| C2 |
O1 |
1.368 |
1.355 |
| C5 |
C6 |
1.376 |
1.383 |
| C12 |
N3 |
1.308 |
1.302 |
| O1 |
C3 |
1.387 |
1.359 |
| C3 |
C10 |
1.378 |
1.387 |
| C6 |
C7 |
1.371 |
1.382 |
| C10 |
C7 |
1.381 |
1.382 |
| C7 |
C8 |
1.509 |
1.507 |
| C8 |
C9 |
1.503 |
1.507 |
| O2 |
C9 |
1.244 |
1.208 |
| C9 |
O3 |
1.234 |
1.342 |
| C4 |
H1 |
1.080 |
1.080 |
| C5 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.080 |
1.080 |
| C8 |
H4 |
1.100 |
1.090 |
| C8 |
H5 |
1.100 |
1.090 |
| C10 |
H6 |
1.081 |
1.080 |
| C12 |
H7 |
1.080 |
1.080 |
| N1 |
H8 |
1.000 |
0.970 |
| N1 |
H9 |
1.000 |
0.970 |
| O3 |
H11 |
0.950 |
0.967 |
| N4 |
H12 |
1.000 |
0.970 |
Bond Angles for HGH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
N2 |
116.9 |
118.9 |
| C1 |
N1 |
H8 |
109.5 |
119.9 |
| C1 |
N1 |
H9 |
109.4 |
120.0 |
| C1 |
N2 |
C2 |
117.9 |
121.1 |
| C13 |
N4 |
H12 |
127.6 |
126.3 |
| C13 |
C11 |
C2 |
116.9 |
118.3 |
| C13 |
C11 |
N3 |
109.9 |
107.1 |
| C11 |
C2 |
N2 |
120.6 |
118.6 |
| N2 |
C2 |
O1 |
124.6 |
120.7 |
| N4 |
C12 |
H7 |
122.5 |
125.1 |
| C5 |
C4 |
C3 |
117.9 |
119.9 |
| C4 |
C5 |
C6 |
121.0 |
120.1 |
| C5 |
C4 |
H1 |
121.0 |
120.1 |
| C4 |
C5 |
H2 |
119.5 |
120.0 |
| C4 |
C3 |
C10 |
122.2 |
119.9 |
| C3 |
C4 |
H1 |
121.0 |
120.0 |
| N3 |
C11 |
C2 |
133.1 |
134.6 |
| C11 |
C2 |
O1 |
114.8 |
120.7 |
| C11 |
N3 |
C12 |
103.6 |
109.4 |
| C5 |
C6 |
C7 |
120.7 |
120.1 |
| C6 |
C5 |
H2 |
119.5 |
120.0 |
| C5 |
C6 |
H3 |
119.7 |
119.9 |
| N3 |
C12 |
H7 |
122.5 |
125.0 |
| C3 |
C10 |
H6 |
120.3 |
120.0 |
| C6 |
C7 |
C8 |
121.2 |
120.0 |
| C7 |
C6 |
H3 |
119.6 |
119.9 |
| C7 |
C8 |
C9 |
119.0 |
109.5 |
| C7 |
C8 |
H4 |
107.1 |
109.5 |
| C7 |
C8 |
H5 |
107.0 |
109.4 |
| C8 |
C9 |
O3 |
117.7 |
120.0 |
| C9 |
C8 |
H4 |
107.0 |
109.5 |
| C9 |
C8 |
H5 |
107.1 |
109.5 |
| O2 |
C9 |
O3 |
121.2 |
120.0 |
| C9 |
O3 |
H11 |
109.5 |
117.0 |
| H4 |
C8 |
H5 |
109.4 |
109.5 |
| H8 |
N1 |
H9 |
109.5 |
120.0 |
Torsion Angles for HGH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
N2 |
C2 |
179.9 |
180.0 |
| H8 |
N1 |
C1 |
H9 |
240.0 |
180.1 |
| N5 |
C1 |
N1 |
H8 |
360.0 |
179.4 |
| N5 |
C1 |
N1 |
H9 |
120.0 |
359.3 |
| N5 |
C13 |
N4 |
H12 |
359.3 |
359.9 |
| N2 |
C1 |
N1 |
H8 |
178.5 |
0.0 |
| N2 |
C1 |
N1 |
H9 |
298.5 |
179.9 |
| C11 |
C2 |
N2 |
C1 |
1.7 |
359.4 |
| C1 |
N2 |
C2 |
O1 |
179.9 |
179.4 |
| N4 |
C13 |
C11 |
C2 |
181.5 |
180.0 |
| N4 |
C13 |
C11 |
N3 |
358.2 |
0.2 |
| C13 |
N4 |
C12 |
H7 |
184.0 |
180.1 |
| C13 |
C11 |
C2 |
N2 |
358.7 |
0.3 |
| N3 |
C11 |
C13 |
C2 |
176.7 |
180.2 |
| C13 |
C11 |
C2 |
O1 |
180.2 |
180.3 |
| C13 |
C11 |
N3 |
C12 |
4.0 |
359.8 |
| N3 |
C11 |
C2 |
N2 |
182.9 |
180.0 |
| C11 |
C2 |
N2 |
O1 |
181.7 |
180.0 |
| N3 |
C12 |
N4 |
H7 |
180.0 |
179.8 |
| C5 |
C4 |
C3 |
C10 |
1.6 |
0.1 |
| C3 |
C4 |
C5 |
H1 |
180.0 |
180.2 |
| C4 |
C5 |
C6 |
C7 |
1.9 |
0.1 |
| C6 |
C5 |
C4 |
H2 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
H3 |
181.9 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
358.0 |
359.9 |
| C5 |
C4 |
C3 |
H1 |
180.0 |
179.8 |
| C3 |
C4 |
C5 |
H2 |
178.0 |
180.0 |
| C4 |
C3 |
C10 |
H6 |
179.0 |
180.0 |
| C1 |
N2 |
C2 |
C11 |
1.7 |
359.4 |
| C13 |
C11 |
C2 |
N3 |
175.8 |
180.3 |
| N2 |
C2 |
C11 |
O1 |
178.4 |
180.0 |
| C2 |
C11 |
N3 |
C12 |
180.0 |
180.0 |
| C13 |
C11 |
N3 |
C2 |
184.0 |
179.7 |
| N3 |
C11 |
C2 |
O1 |
4.5 |
360.0 |
| C11 |
N3 |
C12 |
H7 |
175.0 |
180.0 |
| C11 |
C2 |
O1 |
N2 |
178.4 |
180.0 |
| C6 |
C5 |
C4 |
C3 |
358.0 |
359.9 |
| C6 |
C5 |
C4 |
H1 |
178.0 |
179.7 |
| C4 |
C5 |
C6 |
H2 |
180.0 |
180.1 |
| C5 |
C6 |
C7 |
C8 |
182.5 |
180.0 |
| C7 |
C6 |
C5 |
H3 |
180.0 |
180.0 |
| N4 |
C12 |
N3 |
H7 |
180.0 |
180.2 |
| C12 |
N3 |
C11 |
C2 |
180.0 |
180.0 |
| N2 |
C2 |
O1 |
C3 |
355.1 |
5.8 |
| O1 |
C3 |
C4 |
H1 |
7.8 |
0.2 |
| C11 |
C2 |
O1 |
C3 |
173.4 |
185.9 |
| O1 |
C3 |
C10 |
H6 |
353.4 |
0.1 |
| C10 |
C3 |
C4 |
H1 |
181.5 |
180.3 |
| C7 |
C6 |
C5 |
H2 |
181.9 |
180.0 |
| C5 |
C6 |
C7 |
H3 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
248.0 |
90.0 |
| C6 |
C7 |
C8 |
H4 |
9.3 |
210.0 |
| C6 |
C7 |
C8 |
H5 |
126.6 |
330.0 |
| C4 |
C3 |
C10 |
C7 |
359.0 |
359.9 |
| C10 |
C7 |
C6 |
H3 |
178.7 |
179.9 |
| C10 |
C7 |
C8 |
H4 |
193.2 |
30.1 |
| C10 |
C7 |
C8 |
H5 |
310.4 |
150.0 |
| C8 |
C7 |
C6 |
H3 |
2.5 |
360.0 |
| C7 |
C8 |
C9 |
O3 |
167.4 |
180.0 |
| C9 |
C8 |
C7 |
H4 |
238.6 |
240.0 |
| C9 |
C8 |
C7 |
H5 |
121.4 |
120.0 |
| H4 |
C8 |
C7 |
H5 |
242.7 |
240.0 |
| C7 |
C8 |
C9 |
H4 |
121.4 |
120.0 |
| C7 |
C8 |
C9 |
H5 |
238.6 |
240.0 |
| O2 |
C9 |
C8 |
O3 |
181.9 |
180.0 |
| C8 |
C9 |
O3 |
H11 |
181.9 |
180.0 |
| H4 |
C8 |
C9 |
H5 |
117.3 |
120.0 |
| C8 |
C9 |
O2 |
O3 |
178.0 |
180.0 |
| O2 |
C9 |
C8 |
H4 |
227.9 |
240.0 |
| O2 |
C9 |
C8 |
H5 |
110.6 |
120.0 |
| O2 |
C9 |
O3 |
H11 |
0.0 |
0.0 |
| O3 |
C9 |
C8 |
H4 |
46.0 |
60.0 |
| O3 |
C9 |
C8 |
H5 |
288.7 |
300.0 |
| C5 |
C4 |
H1 |
C3 |
180.0 |
180.2 |
| H1 |
C4 |
C5 |
C6 |
178.0 |
179.7 |
| H1 |
C4 |
C5 |
H2 |
358.0 |
359.8 |
| H1 |
C4 |
C3 |
C10 |
181.5 |
180.3 |
| H2 |
C5 |
C4 |
C3 |
178.0 |
180.0 |
| C4 |
C5 |
H2 |
C6 |
180.0 |
179.9 |
| H2 |
C5 |
C4 |
H1 |
358.0 |
359.8 |
| H2 |
C5 |
C6 |
C7 |
181.9 |
180.0 |
| H2 |
C5 |
C6 |
H3 |
1.9 |
360.0 |
| C5 |
C6 |
H3 |
C7 |
180.0 |
180.0 |
| H3 |
C6 |
C5 |
H2 |
1.9 |
360.0 |
| H3 |
C6 |
C7 |
C8 |
2.5 |
360.0 |
| C7 |
C8 |
H4 |
C9 |
231.3 |
240.0 |
| C7 |
C8 |
H4 |
H5 |
115.7 |
120.0 |
| H4 |
C8 |
C9 |
O3 |
46.0 |
60.0 |
| C9 |
C8 |
H4 |
H5 |
244.3 |
240.0 |
| C7 |
C8 |
H5 |
C9 |
128.7 |
120.0 |
| C7 |
C8 |
H5 |
H4 |
244.3 |
240.0 |
| H5 |
C8 |
C9 |
O3 |
288.7 |
300.0 |
| C9 |
C8 |
H5 |
H4 |
115.7 |
120.0 |
| H8 |
N1 |
C1 |
N2 |
178.5 |
0.0 |
| C1 |
N1 |
H8 |
H9 |
120.0 |
179.9 |
| H9 |
N1 |
C1 |
N2 |
298.5 |
179.9 |
| C1 |
N1 |
H9 |
H8 |
240.0 |
180.1 |
| H12 |
N4 |
C12 |
H7 |
4.0 |
0.1 |