Atom Nomenclature for HGH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for HGH

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
C11 C4
C7 C5
C8 C6
C9 C7
C10 C8
C12 C9
C13 C10
N1 N1
N2 N2
C3 C11
N3 N3
C1 C12
C2 C13
O1 O1
O2 O2
O3 O3
N4 N4
N5 N5
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H11 H11
H12 H12