PDB Chemical Component HGB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HGB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.226 |
1.346 |
C1 |
O2 |
1.236 |
1.215 |
C1 |
C2 |
1.426 |
1.477 |
C3 |
C5 |
1.413 |
1.379 |
C3 |
C2 |
1.415 |
1.396 |
C3 |
HC3 |
1.080 |
1.080 |
C5 |
C7 |
1.412 |
1.384 |
C5 |
HC5 |
1.080 |
1.080 |
C7 |
HG |
2.040 |
2.099 |
C7 |
C6 |
1.411 |
1.383 |
HG |
O3 |
|
1.950 |
C6 |
C4 |
1.414 |
1.380 |
C6 |
HC6 |
1.080 |
1.080 |
C4 |
C2 |
1.419 |
1.396 |
C4 |
HC4 |
1.080 |
1.080 |
O1 |
HO11 |
0.950 |
0.967 |
O3 |
HO31 |
|
0.967 |
Bond Angles for HGB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
O2 |
118.9 |
120.0 |
O1 |
C1 |
C2 |
120.5 |
120.0 |
C1 |
O1 |
HO11 |
109.5 |
120.1 |
O2 |
C1 |
C2 |
120.6 |
120.0 |
C1 |
C2 |
C3 |
120.2 |
120.2 |
C1 |
C2 |
C4 |
120.7 |
120.1 |
C5 |
C3 |
C2 |
120.3 |
119.9 |
C5 |
C3 |
HC3 |
74.9 |
120.1 |
C3 |
C5 |
C7 |
120.4 |
120.1 |
C3 |
C5 |
HC5 |
120.0 |
120.0 |
C2 |
C3 |
HC3 |
164.7 |
120.0 |
C3 |
C2 |
C4 |
119.1 |
119.7 |
C7 |
C5 |
HC5 |
119.7 |
119.9 |
C5 |
C7 |
HG |
119.4 |
119.9 |
C5 |
C7 |
C6 |
119.6 |
120.3 |
HG |
C7 |
C6 |
121.0 |
119.8 |
C7 |
HG |
O3 |
|
179.9 |
C7 |
C6 |
C4 |
120.0 |
120.2 |
C7 |
C6 |
HC6 |
164.9 |
119.9 |
HG |
O3 |
HO31 |
|
106.7 |
C4 |
C6 |
HC6 |
75.0 |
119.9 |
C6 |
C4 |
C2 |
120.5 |
119.8 |
C6 |
C4 |
HC4 |
119.9 |
120.1 |
C2 |
C4 |
HC4 |
119.5 |
120.0 |
Torsion Angles for HGB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C1 |
O1 |
C2 |
180.4 |
180.0 |
O1 |
C1 |
C2 |
C3 |
179.6 |
180.0 |
O1 |
C1 |
C2 |
C4 |
0.7 |
0.0 |
O1 |
C1 |
O2 |
C2 |
179.6 |
180.0 |
O2 |
C1 |
O1 |
HO11 |
360.0 |
0.0 |
O2 |
C1 |
C2 |
C3 |
359.1 |
-0.0 |
O2 |
C1 |
C2 |
C4 |
180.3 |
180.0 |
O1 |
C1 |
C2 |
O2 |
180.4 |
180.0 |
C2 |
C1 |
O1 |
HO11 |
179.6 |
180.0 |
C5 |
C3 |
C2 |
C1 |
180.2 |
180.0 |
C1 |
C2 |
C3 |
HC3 |
1.2 |
359.9 |
C3 |
C2 |
C1 |
C4 |
178.8 |
180.0 |
C6 |
C4 |
C2 |
C1 |
179.8 |
179.8 |
C1 |
C2 |
C4 |
HC4 |
359.2 |
0.0 |
C1 |
C2 |
C3 |
C5 |
180.2 |
180.0 |
C2 |
C3 |
C5 |
HC3 |
180.3 |
179.9 |
C5 |
C3 |
C2 |
C4 |
359.1 |
0.0 |
C7 |
C5 |
C3 |
HC5 |
180.5 |
180.1 |
C3 |
C5 |
C7 |
HG |
179.7 |
180.0 |
C3 |
C5 |
C7 |
C6 |
359.3 |
0.2 |
C1 |
C2 |
C3 |
C4 |
181.2 |
180.0 |
C5 |
C3 |
C2 |
HC3 |
179.0 |
180.1 |
C2 |
C3 |
C5 |
C7 |
0.8 |
-0.0 |
C2 |
C3 |
C5 |
HC5 |
180.3 |
179.9 |
C6 |
C4 |
C2 |
C3 |
0.9 |
359.7 |
C3 |
C2 |
C4 |
HC4 |
180.3 |
180.0 |
C5 |
C3 |
HC3 |
C2 |
180.9 |
179.9 |
HC3 |
C3 |
C5 |
C7 |
180.6 |
180.1 |
HC3 |
C3 |
C5 |
HC5 |
0.1 |
0.0 |
HC3 |
C3 |
C2 |
C4 |
180.0 |
180.0 |
C7 |
C5 |
C3 |
C2 |
0.8 |
-0.0 |
C7 |
C5 |
C3 |
HC3 |
180.6 |
180.1 |
C3 |
C5 |
C7 |
HC5 |
179.5 |
179.9 |
HG |
C7 |
C5 |
C6 |
180.4 |
179.8 |
C5 |
C7 |
HG |
O3 |
|
360.0 |
C5 |
C7 |
C6 |
C4 |
0.7 |
359.6 |
C5 |
C7 |
C6 |
HC6 |
180.1 |
180.1 |
HC5 |
C5 |
C3 |
C2 |
180.3 |
179.9 |
HC5 |
C5 |
C3 |
HC3 |
0.1 |
0.0 |
C3 |
C5 |
HC5 |
C7 |
180.5 |
180.1 |
HC5 |
C5 |
C7 |
HG |
0.2 |
0.1 |
HC5 |
C5 |
C7 |
C6 |
179.8 |
180.3 |
HG |
C7 |
C5 |
HC5 |
0.2 |
0.1 |
C5 |
C7 |
HG |
C6 |
179.6 |
180.2 |
HG |
C7 |
C6 |
C4 |
180.3 |
179.8 |
HG |
C7 |
C6 |
HC6 |
359.7 |
0.3 |
C7 |
HG |
O3 |
HO31 |
|
179.9 |
C6 |
C7 |
C5 |
HC5 |
179.8 |
180.3 |
C5 |
C7 |
C6 |
HG |
180.4 |
179.8 |
C6 |
C7 |
HG |
O3 |
|
179.8 |
C4 |
C6 |
C7 |
HC6 |
180.6 |
179.5 |
C7 |
C6 |
C4 |
C2 |
359.2 |
0.5 |
C7 |
C6 |
C4 |
HC4 |
179.8 |
180.2 |
O3 |
HG |
C7 |
C6 |
|
179.8 |
C1 |
C2 |
C4 |
C6 |
179.8 |
179.8 |
C3 |
C2 |
C4 |
C6 |
0.9 |
359.7 |
C7 |
C6 |
C4 |
HC6 |
179.8 |
180.5 |
C2 |
C4 |
C6 |
HC4 |
179.4 |
180.3 |
C7 |
C6 |
HC6 |
C4 |
180.6 |
179.5 |
HC6 |
C6 |
C4 |
C2 |
179.3 |
180.0 |
HC6 |
C6 |
C4 |
HC4 |
359.9 |
359.7 |
C1 |
C2 |
C4 |
C3 |
178.8 |
180.0 |
C4 |
C2 |
C3 |
HC3 |
180.0 |
180.0 |
C2 |
C4 |
C6 |
HC6 |
179.3 |
180.0 |
C6 |
C4 |
C2 |
HC4 |
180.6 |
179.7 |
HC4 |
C4 |
C6 |
HC6 |
359.9 |
359.7 |
C6 |
C4 |
HC4 |
C2 |
179.4 |
180.3 |
HO11 |
O1 |
C1 |
O2 |
360.0 |
0.0 |
HO11 |
O1 |
C1 |
C2 |
179.6 |
180.0 |