Atom Nomenclature for HG7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for HG7

Atom Name (V3) Atom Name (V2)
C C
N N
O O
C1 C1
C2 C2
C3 C3
O3 O3
C4 C4
C5 C5
C6 C6
CA CA
N1A N1A
C2A C2A
C3A C3A
C4A C4A
N5A N5A
C6A C6A
C7A C7A
H2 H2
H H
H2B H2B
HO3 HO3
H4 H4
H5 H5
H6 H6
HA HA
HN1A HN1A
H2A H2A
H2AA H2AA
H3A H3A
H3AA H3AA
H4A H4A
H4AA H4AA
H6A H6A
H6AA H6AA
H6AB H6AB
H7A H7A
H7AA H7AA
H7AB H7AB