PDB Chemical Component HFG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HFG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL1 |
C6 |
1.795 |
1.737 |
| C6 |
C5 |
1.380 |
1.379 |
| C6 |
C7 |
1.479 |
1.390 |
| BR1 |
C7 |
1.873 |
1.891 |
| C5 |
C10 |
1.389 |
1.394 |
| C7 |
C8 |
1.383 |
1.377 |
| O11 |
C4 |
1.244 |
1.217 |
| C10 |
C4 |
1.470 |
1.470 |
| C10 |
C9 |
1.485 |
1.413 |
| C8 |
C9 |
1.380 |
1.396 |
| C4 |
N3 |
1.415 |
1.353 |
| C9 |
N1 |
1.346 |
1.357 |
| N1' |
C6' |
1.455 |
1.469 |
| N1' |
C2' |
1.455 |
1.468 |
| C6' |
C5' |
1.531 |
1.530 |
| O4' |
C21 |
1.233 |
1.208 |
| N3 |
C1' |
1.463 |
1.465 |
| N3 |
C2 |
1.346 |
1.358 |
| N1 |
C2 |
1.347 |
1.298 |
| C21 |
C3' |
1.524 |
1.507 |
| C21 |
C1' |
1.527 |
1.506 |
| C3' |
C2' |
1.534 |
1.530 |
| C2' |
C39 |
1.529 |
1.530 |
| C5' |
C4' |
1.536 |
1.531 |
| C39 |
C4' |
1.530 |
1.531 |
| C39 |
O7' |
1.434 |
1.428 |
| C3' |
H1 |
1.100 |
1.090 |
| C3' |
H2 |
1.100 |
1.089 |
| C2' |
H3 |
1.100 |
1.090 |
| N1' |
H4 |
1.000 |
1.010 |
| C6' |
H6 |
1.100 |
1.090 |
| C6' |
H7 |
1.100 |
1.090 |
| C5' |
H8 |
1.100 |
1.090 |
| C5' |
H9 |
1.101 |
1.091 |
| C4' |
H10 |
1.100 |
1.091 |
| C4' |
H11 |
1.100 |
1.089 |
| C39 |
H12 |
1.100 |
1.090 |
| O7' |
H13 |
0.950 |
0.968 |
| C1' |
H14 |
1.100 |
1.090 |
| C1' |
H15 |
1.100 |
1.090 |
| C5 |
H16 |
1.080 |
1.080 |
| C2 |
H17 |
1.080 |
1.079 |
| C8 |
H18 |
1.080 |
1.080 |
Bond Angles for HFG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C5 |
H16 |
121.0 |
120.3 |
| C5 |
C10 |
C9 |
122.3 |
120.1 |
| C7 |
C8 |
H18 |
121.0 |
120.1 |
| C10 |
C9 |
N1 |
119.6 |
119.0 |
| C4 |
N3 |
C2 |
121.0 |
120.6 |
| N1' |
C6' |
C5' |
112.2 |
109.5 |
| C6' |
N1' |
H4 |
107.2 |
111.0 |
| N1' |
C6' |
H6 |
108.8 |
109.4 |
| N1' |
C6' |
H7 |
108.8 |
109.5 |
| N1' |
C2' |
C39 |
108.8 |
109.6 |
| N1' |
C2' |
H3 |
107.5 |
109.5 |
| C6' |
C5' |
C4' |
112.3 |
109.3 |
| C5' |
C6' |
H6 |
108.8 |
109.4 |
| C5' |
C6' |
H7 |
108.8 |
109.5 |
| C6' |
C5' |
H8 |
108.8 |
109.5 |
| C6' |
C5' |
H9 |
108.8 |
109.5 |
| O4' |
C21 |
C3' |
120.6 |
120.0 |
| O4' |
C21 |
C1' |
120.7 |
120.0 |
| N3 |
C1' |
H14 |
110.1 |
109.5 |
| N3 |
C1' |
H15 |
110.1 |
109.5 |
| N3 |
C2 |
H17 |
118.6 |
118.3 |
| N1 |
C2 |
H17 |
118.6 |
118.4 |
| C3' |
C21 |
C1' |
118.7 |
120.0 |
| C21 |
C3' |
C2' |
116.0 |
109.5 |
| C21 |
C3' |
H1 |
107.8 |
109.4 |
| C21 |
C3' |
H2 |
107.8 |
109.5 |
| C21 |
C1' |
H14 |
110.1 |
109.5 |
| C21 |
C1' |
H15 |
110.1 |
109.5 |
| C3' |
C2' |
C39 |
115.0 |
109.5 |
| C2' |
C3' |
H1 |
107.8 |
109.4 |
| C2' |
C3' |
H2 |
107.8 |
109.5 |
| C3' |
C2' |
H3 |
106.6 |
109.4 |
| C2' |
C39 |
C4' |
110.6 |
109.3 |
| C2' |
C39 |
O7' |
110.1 |
109.5 |
| C39 |
C2' |
H3 |
106.6 |
109.5 |
| C2' |
C39 |
H12 |
108.3 |
109.5 |
| C4' |
C5' |
H8 |
108.7 |
109.6 |
| C4' |
C5' |
H9 |
108.7 |
109.5 |
| C5' |
C4' |
H10 |
108.6 |
109.5 |
| C5' |
C4' |
H11 |
108.6 |
109.6 |
| C39 |
C4' |
H10 |
108.6 |
109.5 |
| C39 |
C4' |
H11 |
108.6 |
109.6 |
| O7' |
C39 |
H12 |
109.6 |
109.5 |
| C39 |
O7' |
H13 |
109.5 |
114.0 |
| H1 |
C3' |
H2 |
109.5 |
109.5 |
| H6 |
C6' |
H7 |
109.5 |
109.4 |
| H8 |
C5' |
H9 |
109.5 |
109.4 |
| H10 |
C4' |
H11 |
109.5 |
109.5 |
| H14 |
C1' |
H15 |
109.5 |
109.5 |
Torsion Angles for HFG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL1 |
C6 |
C5 |
H16 |
0.3 |
0.0 |
| C7 |
C6 |
C5 |
H16 |
180.7 |
180.0 |
| C6 |
C7 |
C8 |
H18 |
179.7 |
180.0 |
| BR1 |
C7 |
C8 |
H18 |
0.8 |
0.0 |
| C5 |
C10 |
C9 |
N1 |
180.5 |
179.7 |
| O11 |
C4 |
N3 |
C2 |
179.8 |
180.3 |
| C10 |
C4 |
N3 |
C2 |
359.5 |
0.3 |
| C4 |
N3 |
C1' |
H14 |
191.1 |
150.3 |
| C4 |
N3 |
C1' |
H15 |
311.9 |
30.3 |
| C4 |
N3 |
C2 |
H17 |
180.0 |
179.7 |
| C9 |
N1 |
C2 |
H17 |
180.5 |
180.0 |
| C6' |
N1' |
C2' |
C39 |
56.6 |
61.7 |
| C6' |
N1' |
C2' |
H3 |
301.5 |
301.6 |
| N1' |
C6' |
C5' |
C4' |
43.6 |
59.1 |
| C5' |
C6' |
N1' |
H6 |
239.6 |
240.0 |
| C5' |
C6' |
N1' |
H7 |
120.4 |
120.1 |
| N1' |
C6' |
C5' |
H8 |
164.0 |
179.2 |
| N1' |
C6' |
C5' |
H9 |
283.2 |
299.2 |
| H6 |
C6' |
N1' |
H7 |
240.8 |
240.1 |
| C3' |
C2' |
N1' |
C39 |
128.2 |
120.1 |
| N1' |
C2' |
C3' |
H1 |
168.6 |
304.9 |
| N1' |
C2' |
C3' |
H2 |
50.5 |
184.9 |
| C3' |
C2' |
N1' |
H3 |
243.3 |
240.1 |
| N1' |
C2' |
C39 |
C4' |
304.5 |
300.8 |
| N1' |
C2' |
C39 |
O7' |
182.8 |
180.9 |
| C39 |
C2' |
N1' |
H3 |
115.1 |
120.1 |
| N1' |
C2' |
C39 |
H12 |
63.0 |
60.8 |
| C5' |
C6' |
N1' |
H4 |
70.4 |
62.4 |
| N1' |
C6' |
C5' |
H6 |
120.4 |
120.0 |
| N1' |
C6' |
C5' |
H7 |
239.6 |
239.9 |
| C4' |
C5' |
C6' |
H8 |
239.6 |
239.9 |
| C4' |
C5' |
C6' |
H9 |
120.4 |
119.9 |
| C6' |
C5' |
C4' |
H10 |
73.3 |
62.3 |
| C6' |
C5' |
C4' |
H11 |
192.2 |
182.4 |
| H6 |
C6' |
C5' |
H7 |
119.2 |
120.0 |
| H8 |
C5' |
C6' |
H9 |
240.8 |
240.0 |
| C3' |
C21 |
O4' |
C1' |
178.9 |
180.3 |
| O4' |
C21 |
C3' |
C2' |
29.0 |
0.0 |
| O4' |
C21 |
C3' |
H1 |
149.9 |
120.0 |
| O4' |
C21 |
C3' |
H2 |
268.0 |
239.9 |
| O4' |
C21 |
C1' |
H14 |
262.1 |
120.0 |
| O4' |
C21 |
C1' |
H15 |
141.3 |
240.0 |
| C21 |
C1' |
N3 |
H14 |
240.4 |
120.0 |
| C21 |
C1' |
N3 |
H15 |
119.6 |
240.0 |
| H14 |
C1' |
N3 |
H15 |
239.2 |
120.0 |
| C2 |
N3 |
C1' |
H14 |
13.0 |
330.0 |
| C2 |
N3 |
C1' |
H15 |
133.8 |
210.0 |
| N1 |
C2 |
N3 |
H17 |
180.0 |
180.0 |
| C10 |
C9 |
N1 |
C2 |
359.6 |
0.4 |
| N3 |
C2 |
N1 |
H17 |
180.0 |
180.0 |
| O4' |
C21 |
C3' |
C1' |
181.1 |
179.7 |
| C3' |
C21 |
C1' |
H14 |
83.2 |
299.8 |
| C3' |
C21 |
C1' |
H15 |
322.4 |
59.7 |
| C21 |
C3' |
C2' |
C39 |
54.3 |
185.0 |
| C2' |
C3' |
C21 |
H1 |
239.1 |
240.1 |
| C2' |
C3' |
C21 |
H2 |
121.0 |
120.1 |
| C21 |
C3' |
C2' |
H3 |
172.3 |
304.9 |
| H1 |
C3' |
C21 |
H2 |
241.9 |
240.0 |
| O4' |
C21 |
C1' |
C3' |
178.9 |
180.3 |
| N3 |
C1' |
C21 |
H14 |
119.6 |
240.0 |
| N3 |
C1' |
C21 |
H15 |
240.4 |
120.0 |
| C1' |
C21 |
C3' |
C2' |
207.9 |
180.3 |
| C1' |
C21 |
C3' |
H1 |
328.8 |
300.2 |
| C1' |
C21 |
C3' |
H2 |
86.9 |
60.2 |
| H14 |
C1' |
C21 |
H15 |
120.8 |
240.0 |
| N1' |
C2' |
C3' |
C39 |
235.2 |
239.9 |
| N1' |
C2' |
C3' |
H3 |
117.3 |
119.9 |
| C2' |
C3' |
C21 |
C1' |
207.9 |
180.3 |
| C21 |
C3' |
C2' |
H1 |
121.0 |
119.9 |
| C21 |
C3' |
C2' |
H2 |
239.1 |
239.9 |
| C3' |
C2' |
C39 |
C4' |
178.1 |
180.8 |
| C3' |
C2' |
C39 |
O7' |
56.4 |
60.8 |
| C39 |
C2' |
C3' |
H3 |
242.1 |
240.1 |
| C3' |
C2' |
C39 |
H12 |
296.6 |
300.7 |
| H1 |
C3' |
C2' |
H2 |
118.1 |
120.0 |
| N1' |
C2' |
C39 |
H3 |
244.3 |
240.0 |
| C39 |
C2' |
C3' |
H1 |
293.4 |
65.1 |
| C39 |
C2' |
C3' |
H2 |
175.3 |
305.1 |
| C3' |
C2' |
C39 |
H3 |
117.9 |
119.9 |
| C2' |
C39 |
C4' |
H10 |
293.1 |
297.8 |
| C2' |
C39 |
C4' |
H11 |
174.2 |
177.6 |
| O7' |
C39 |
C2' |
H12 |
119.8 |
120.1 |
| C2' |
C39 |
O7' |
H13 |
180.0 |
180.0 |
| C4' |
C5' |
C6' |
H6 |
283.2 |
299.1 |
| C4' |
C5' |
C6' |
H7 |
164.0 |
179.2 |
| C6' |
C5' |
C4' |
H8 |
120.5 |
120.1 |
| C6' |
C5' |
C4' |
H9 |
239.6 |
240.1 |
| C2' |
C39 |
C4' |
C5' |
53.7 |
57.6 |
| C39 |
C4' |
C5' |
H10 |
239.5 |
240.1 |
| C39 |
C4' |
C5' |
H11 |
120.5 |
120.0 |
| H8 |
C5' |
C4' |
H9 |
119.1 |
120.0 |
| H10 |
C4' |
C5' |
H11 |
241.0 |
239.9 |
| C2' |
C39 |
C4' |
O7' |
238.2 |
240.1 |
| C4' |
C39 |
C2' |
H3 |
60.2 |
60.9 |
| C2' |
C39 |
C4' |
H12 |
118.6 |
119.9 |
| C39 |
C4' |
C5' |
H8 |
192.3 |
182.3 |
| C39 |
C4' |
C5' |
H9 |
73.2 |
62.3 |
| C5' |
C4' |
C39 |
H10 |
120.5 |
119.8 |
| C5' |
C4' |
C39 |
H11 |
239.5 |
240.0 |
| H10 |
C4' |
C39 |
H11 |
119.0 |
120.2 |
| C2' |
C39 |
O7' |
C4' |
122.1 |
119.8 |
| O7' |
C39 |
C2' |
H3 |
298.5 |
300.9 |
| C2' |
C39 |
O7' |
H12 |
240.9 |
240.0 |
| O7' |
C39 |
C4' |
H10 |
55.0 |
57.7 |
| O7' |
C39 |
C4' |
H11 |
296.0 |
297.5 |
| H1 |
C3' |
C21 |
C1' |
328.8 |
300.2 |
| C21 |
C3' |
H1 |
C2' |
234.0 |
240.0 |
| C21 |
C3' |
H1 |
H2 |
117.0 |
120.0 |
| H1 |
C3' |
C2' |
C39 |
293.4 |
65.1 |
| C2' |
C3' |
H1 |
H2 |
243.0 |
240.0 |
| H1 |
C3' |
C2' |
H3 |
51.3 |
185.0 |
| H2 |
C3' |
C21 |
C1' |
86.9 |
60.2 |
| C21 |
C3' |
H2 |
C2' |
126.0 |
120.1 |
| C21 |
C3' |
H2 |
H1 |
243.0 |
240.0 |
| H2 |
C3' |
C2' |
C39 |
175.3 |
305.1 |
| C2' |
C3' |
H2 |
H1 |
117.0 |
120.0 |
| H2 |
C3' |
C2' |
H3 |
293.2 |
65.0 |
| N1' |
C2' |
H3 |
C39 |
116.6 |
120.1 |
| C3' |
C2' |
H3 |
C39 |
236.7 |
240.1 |
| H3 |
C2' |
C3' |
H1 |
51.3 |
185.0 |
| H3 |
C2' |
C3' |
H2 |
293.2 |
65.0 |
| H3 |
C2' |
C39 |
C4' |
60.2 |
60.9 |
| H3 |
C2' |
C39 |
O7' |
298.5 |
300.9 |
| H3 |
C2' |
C39 |
H12 |
178.7 |
180.8 |
| H4 |
N1' |
C6' |
C5' |
70.4 |
62.4 |
| H4 |
N1' |
C6' |
H6 |
190.7 |
182.4 |
| H4 |
N1' |
C6' |
H7 |
309.9 |
302.3 |
| H4 |
N1' |
C2' |
C39 |
295.4 |
297.6 |
| H4 |
N1' |
C2' |
H3 |
180.2 |
177.6 |
| N1' |
C6' |
H6 |
C5' |
237.5 |
240.0 |
| H6 |
C6' |
N1' |
H4 |
190.7 |
182.4 |
| N1' |
C6' |
H6 |
H7 |
118.8 |
119.9 |
| H6 |
C6' |
C5' |
C4' |
283.2 |
299.1 |
| C5' |
C6' |
H6 |
H7 |
241.2 |
240.0 |
| H6 |
C6' |
C5' |
H8 |
43.6 |
59.2 |
| H6 |
C6' |
C5' |
H9 |
162.8 |
179.2 |
| N1' |
C6' |
H7 |
C5' |
122.5 |
120.1 |
| H7 |
C6' |
N1' |
H4 |
309.9 |
302.3 |
| N1' |
C6' |
H7 |
H6 |
241.2 |
240.1 |
| H7 |
C6' |
C5' |
C4' |
164.0 |
179.2 |
| C5' |
C6' |
H7 |
H6 |
118.8 |
120.0 |
| H7 |
C6' |
C5' |
H8 |
284.4 |
299.2 |
| H7 |
C6' |
C5' |
H9 |
43.6 |
59.3 |
| C6' |
C5' |
H8 |
C4' |
237.4 |
240.1 |
| H8 |
C5' |
C6' |
H6 |
43.6 |
59.2 |
| H8 |
C5' |
C6' |
H7 |
284.4 |
299.2 |
| C6' |
C5' |
H8 |
H9 |
118.7 |
120.1 |
| C4' |
C5' |
H8 |
H9 |
241.3 |
240.0 |
| H8 |
C5' |
C4' |
H10 |
312.8 |
302.2 |
| H8 |
C5' |
C4' |
H11 |
71.8 |
62.3 |
| C6' |
C5' |
H9 |
C4' |
122.6 |
119.9 |
| H9 |
C5' |
C6' |
H6 |
162.8 |
179.2 |
| H9 |
C5' |
C6' |
H7 |
43.6 |
59.3 |
| C6' |
C5' |
H9 |
H8 |
241.3 |
239.9 |
| C4' |
C5' |
H9 |
H8 |
118.7 |
120.1 |
| H9 |
C5' |
C4' |
H10 |
193.7 |
182.2 |
| H9 |
C5' |
C4' |
H11 |
312.6 |
302.3 |
| H10 |
C4' |
C5' |
H8 |
312.8 |
302.2 |
| H10 |
C4' |
C5' |
H9 |
193.7 |
182.2 |
| C5' |
C4' |
H10 |
H11 |
118.4 |
120.1 |
| C39 |
C4' |
H10 |
H11 |
241.6 |
239.8 |
| H11 |
C4' |
C5' |
H8 |
71.8 |
62.3 |
| H11 |
C4' |
C5' |
H9 |
312.6 |
302.3 |
| C5' |
C4' |
H11 |
H10 |
241.6 |
239.9 |
| C39 |
C4' |
H11 |
H10 |
118.4 |
120.2 |
| C2' |
C39 |
H12 |
C4' |
240.0 |
240.2 |
| C2' |
C39 |
H12 |
O7' |
120.2 |
120.1 |
| H12 |
C39 |
C2' |
H3 |
178.7 |
180.8 |
| H12 |
C39 |
C4' |
H10 |
174.6 |
177.9 |
| H12 |
C39 |
C4' |
H11 |
55.6 |
57.7 |
| H12 |
C39 |
O7' |
H13 |
299.0 |
300.0 |
| H13 |
O7' |
C39 |
H12 |
299.0 |
300.0 |
| N3 |
C1' |
H14 |
H15 |
121.2 |
240.0 |
| C21 |
C1' |
H14 |
H15 |
238.8 |
120.0 |
| N3 |
C1' |
H15 |
H14 |
238.8 |
120.0 |
| C21 |
C1' |
H15 |
H14 |
121.2 |
240.0 |
| H16 |
C5 |
C10 |
C9 |
179.2 |
179.9 |