PDB Chemical Component HEU

Ideal Model

Chemical Description

Name 3-(2-HYDROXYETHYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Formula C11 H17 N2 O9 P
Formal charge 0
Molecular weight 352.234 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 40
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-3-(2-hydroxyethyl)uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[3-(2-hydroxyethyl)-2,4-dioxo-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) OCCN1C(=O)C=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C1=O
SMILES (CACTVS) OCCN1C(=O)C=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C1=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)N(C2=O)CCO)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H17N2O9P/c14-4-3-12-9(16)1-2-13(11(12)17)10-5-7(15)8(22-10)6-21-23(18,19)20/h1-2,7-8,10,14-15H,3-6H2,(H2,18,19,20)/t7-,8+,10+/m0/s1
InChIKey descriptor GBGSUYUQSAGQFW-QXFUBDJGSA-N

Status Information

Last modified 2011-06-04
Created 2002-02-15
Release status REL
Model PDB code 1KXS
Processing site RCSB