PDB Chemical Component HEU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HEU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP2 1.480 1.618
P OP1 1.481 1.501
P O5' 1.612 1.619
P OP3   1.616
OP2 HOP2 0.950 0.981
O5' C5' 1.415 1.418
C5' C4' 1.531 1.523
C5' H5' 1.092 1.092
C5' H5'' 1.090 1.093
C4' O4' 1.418 1.441
C4' C3' 1.537 1.522
C4' H4' 1.091 1.094
O4' C1' 1.412 1.434
C1' N1 1.494 1.434
C1' C2' 1.532 1.520
C1' H1' 1.091 1.095
N1 C2 1.397 1.415
N1 C6 1.375 1.385
C2 O2 1.231 1.236
C2 N3 1.396 1.422
N3 C7 1.488 1.460
N3 C4 1.394 1.401
C7 C8 1.530 1.517
C7 H71 1.089 1.094
C7 H72 1.089 1.094
C8 O9 1.408 1.422
C8 H81 1.091 1.095
C8 H82 1.088 1.095
O9 H9 0.961 0.971
C4 O4 1.229 1.229
C4 C5 1.444 1.477
C5 C6 1.350 1.331
C5 H5 1.080 1.083
C6 H6 1.079 1.085
C3' C2' 1.526 1.511
C3' O3' 1.417 1.426
C3' H3' 1.092 1.094
C2' H2' 1.086 1.097
C2' H2'' 1.090 1.095
O3' HO3' 0.950 0.974
OP3 HOP3   0.981

Bond Angles for HEU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 119.7 115.3
OP2 P O5' 107.8 103.7
OP2 P OP3   103.3
P OP2 HOP2 119.7 118.9
OP1 P O5' 108.2 115.0
OP1 P OP3   115.0
O5' P OP3   102.9
P O5' C5' 121.0 118.5
P OP3 HOP3   118.9
O5' C5' C4' 110.5 108.9
O5' C5' H5' 109.4 109.0
O5' C5' H5'' 110.3 108.9
C4' C5' H5' 107.8 110.3
C4' C5' H5'' 110.1 110.3
C5' C4' O4' 108.0 107.9
C5' C4' C3' 113.8 112.9
C5' C4' H4' 107.9 109.5
H5' C5' H5'' 108.7 109.3
O4' C4' C3' 108.4 106.2
O4' C4' H4' 109.3 107.9
C4' O4' C1' 109.2 109.3
C3' C4' H4' 109.4 112.2
C4' C3' C2' 102.3 103.1
C4' C3' O3' 108.3 109.9
C4' C3' H3' 111.7 113.5
O4' C1' N1 109.8 109.3
O4' C1' C2' 106.2 107.4
O4' C1' H1' 107.6 108.0
N1 C1' C2' 115.3 112.8
N1 C1' H1' 111.7 107.8
C1' N1 C2 118.0 119.7
C1' N1 C6 121.4 119.6
C2' C1' H1' 105.7 111.5
C1' C2' C3' 101.8 102.5
C1' C2' H2' 113.8 110.6
C1' C2' H2'' 111.5 111.7
C2 N1 C6 120.4 120.7
N1 C2 O2 121.8 122.3
N1 C2 N3 116.9 115.3
N1 C6 C5 121.9 124.0
N1 C6 H6 121.1 115.6
O2 C2 N3 121.3 122.5
C2 N3 C7 117.4 117.3
C2 N3 C4 124.9 125.4
C7 N3 C4 117.1 117.3
N3 C7 C8 108.3 109.6
N3 C7 H71 111.2 108.3
N3 C7 H72 111.5 108.1
N3 C4 O4 121.9 126.0
N3 C4 C5 114.5 115.0
C8 C7 H71 108.7 111.3
C8 C7 H72 110.2 110.4
C7 C8 O9 109.3 109.4
C7 C8 H81 109.8 110.0
C7 C8 H82 110.7 111.6
H71 C7 H72 106.9 109.1
O9 C8 H81 109.9 107.9
O9 C8 H82 108.9 108.7
C8 O9 H9 108.0 106.8
H81 C8 H82 108.2 109.0
O4 C4 C5 123.6 119.0
C4 C5 C6 121.3 119.7
C4 C5 H5 119.2 118.5
C6 C5 H5 119.5 121.7
C5 C6 H6 116.9 120.4
C2' C3' O3' 112.6 109.7
C2' C3' H3' 111.8 113.2
C3' C2' H2' 106.5 109.7
C3' C2' H2'' 113.8 114.1
O3' C3' H3' 110.0 107.4
C3' O3' HO3' 108.3 107.3
H2' C2' H2'' 109.2 108.3

Torsion Angles for HEU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 O5' 124.1 233.4
OP1 P OP2 OP3   126.3
O5' P OP2 OP3   252.9
OP2 P O5' C5' 174.9 53.2
OP2 P OP3 HOP3   78.5
OP2 P OP1 O5' 236.1 120.6
OP2 P OP1 OP3   239.9
OP1 P OP2 HOP2 180.0 48.8
O5' P OP1 OP3   119.3
OP1 P O5' C5' 44.1 179.9
OP1 P OP3 HOP3   312.0
OP2 P O5' OP1 130.8 233.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 55.9 175.4
OP1 P O5' OP3   234.2
O5' P OP3 HOP3   186.2
P O5' C5' C4' 166.0 180.0
P O5' C5' H5' 47.5 300.4
P O5' C5' H5'' 288.0 59.6
OP2 P OP3 OP1   126.5
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP1 P OP3 O5'   125.8
OP3 P O5' C5'   305.8
HOP2 OP2 P OP1 180.0 48.8
HOP2 OP2 P O5' 55.9 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 118.5 239.6
C4' C5' O5' H5'' 238.0 120.4
O5' C5' C4' O4' 308.1 62.4
O5' C5' C4' C3' 68.5 179.5
O5' C5' C4' H4' 190.1 305.3
H5' C5' O5' H5'' 119.5 240.8
O5' C5' C4' H5' 240.5 119.6
O5' C5' C4' H5'' 122.1 240.5
H5' C5' C4' H5'' 241.5 120.9
O4' C4' C5' C3' 239.6 242.9
O4' C4' C5' H4' 118.0 117.1
C5' C4' O4' C1' 127.4 108.6
C3' C4' C5' H4' 238.4 234.2
C5' C4' C3' C2' 258.0 271.2
C5' C4' C3' O3' 138.9 154.2
C5' C4' C3' H3' 17.6 34.0
O5' C5' H5' C4' 120.2 240.5
O5' C5' H5' H5'' 239.5 119.0
C4' C5' H5' H5'' 119.3 238.5
H5' C5' C4' O4' 67.5 302.9
H5' C5' C4' C3' 188.0 60.0
H5' C5' C4' H4' 309.5 185.7
O5' C5' H5'' C4' 237.8 119.4
O5' C5' H5'' H5' 119.9 241.0
C4' C5' H5'' H5' 242.2 121.5
H5'' C5' C4' O4' 186.0 181.9
H5'' C5' C4' C3' 306.4 299.0
H5'' C5' C4' H4' 68.0 64.8
O4' C4' C5' H5' 67.5 302.9
O4' C4' C5' H5'' 186.0 181.9
C5' C4' O4' C3' 123.8 121.4
C5' C4' O4' H4' 242.9 241.8
C3' C4' O4' H4' 119.1 120.5
O4' C4' C3' C2' 18.2 29.2
O4' C4' C3' O3' 259.1 272.3
O4' C4' C3' H3' 137.8 152.1
C4' O4' C1' N1 210.4 228.3
C4' O4' C1' C2' 335.8 351.0
C4' O4' C1' H1' 88.6 111.3
C3' C4' C5' H5' 188.0 60.0
C3' C4' C5' H5'' 306.4 299.0
C5' C4' C3' O4' 239.8 241.9
C5' C4' C3' H4' 120.7 124.3
O4' C4' C3' H4' 240.9 242.4
C3' C4' O4' C1' 3.6 347.3
C1' C2' C3' C4' 329.2 326.6
C2' C3' C4' O3' 119.1 116.9
C2' C3' C4' H3' 240.4 237.2
C4' C3' C2' H2' 88.7 84.1
C4' C3' C2' H2'' 209.1 205.7
O3' C3' C4' H3' 121.3 120.2
C4' C3' O3' HO3' 180.0 232.6
H4' C4' C5' H5' 309.5 185.7
H4' C4' C5' H5'' 68.0 64.8
C5' C4' H4' O4' 117.2 117.1
C5' C4' H4' C3' 235.7 233.8
O4' C4' H4' C3' 118.5 116.7
H4' C4' O4' C1' 244.5 226.8
H4' C4' C3' C2' 137.2 146.9
H4' C4' C3' O3' 18.1 29.9
H4' C4' C3' H3' 256.9 269.7
C1' O4' C4' C3' 3.6 347.3
C1' O4' C4' H4' 244.5 226.8
N1 C1' O4' C2' 234.7 237.3
N1 C1' O4' H1' 121.8 117.0
O4' C1' N1 C2 264.8 212.9
O4' C1' N1 C6 79.4 32.9
C2' C1' O4' H1' 247.1 239.7
O4' C1' C2' C3' 34.7 26.9
O4' C1' C2' H2' 280.6 270.0
O4' C1' C2' H2'' 156.4 149.4
O4' C1' N1 C2' 119.9 119.4
O4' C1' N1 H1' 240.7 242.9
C2' C1' N1 H1' 120.8 123.5
N1 C1' C2' C3' 156.6 147.4
N1 C1' C2' H2' 42.4 30.6
N1 C1' C2' H2'' 278.3 269.9
C2 N1 C1' C6 185.4 180.0
C1' N1 C2 O2 0.4 359.8
C1' N1 C2 N3 179.2 179.9
C1' N1 C6 C5 182.9 179.9
C1' N1 C6 H6 0.3 359.9
C4' C3' C2' C1' 329.2 326.6
O4' C1' C2' N1 238.1 239.5
O4' C1' C2' H1' 114.1 118.1
N1 C1' C2' H1' 236.0 238.6
C2' C1' N1 C2 144.9 93.5
C2' C1' N1 C6 319.5 273.5
C1' C2' C3' O3' 85.2 83.6
C1' C2' C3' H3' 209.6 203.6
C3' C2' C1' H2' 114.1 116.9
C3' C2' C1' H2'' 238.3 237.5
H2' C2' C1' H2'' 124.1 120.7
O4' C1' H1' N1 120.6 118.0
O4' C1' H1' C2' 246.8 242.3
N1 C1' H1' C2' 126.2 124.3
H1' C1' N1 C2 24.1 330.0
H1' C1' N1 C6 198.7 150.0
H1' C1' C2' C3' 280.6 268.8
H1' C1' C2' H2' 166.4 151.9
H1' C1' C2' H2'' 42.3 31.3
C2 N1 C1' C2' 144.9 93.5
C2 N1 C1' H1' 24.1 330.0
C1' N1 C2 C6 174.7 180.0
C2 N1 C6 C5 357.4 359.9
C2 N1 C6 H6 174.8 179.9
O2 C2 N1 N3 181.1 179.9
N1 C2 N3 C7 167.8 180.5
N1 C2 N3 C4 356.5 0.5
C6 N1 C1' C2' 319.5 273.5
C6 N1 C1' H1' 198.7 150.0
C1' N1 C6 C2 185.5 180.0
C6 N1 C2 O2 185.7 179.8
C6 N1 C2 N3 4.6 359.9
C4 C5 C6 N1 359.2 0.0
N1 C6 C5 H5 179.7 180.1
C5 C6 N1 H6 182.6 179.9
O2 C2 N1 C6 185.7 179.8
N1 C2 O2 N3 178.8 180.1
O2 C2 N3 C7 346.7 0.7
O2 C2 N3 C4 175.4 180.6
N3 C2 N1 C6 4.6 359.9
N1 C2 N3 O2 181.1 179.9
C7 N3 C2 C4 171.3 180.1
C2 N3 C7 C8 281.0 270.0
C2 N3 C7 H71 161.5 148.5
C2 N3 C7 H72 42.4 30.3
C2 N3 C4 O4 179.7 179.2
C2 N3 C4 C5 0.3 359.4
C2 N3 C7 C4 188.0 179.9
C7 N3 C4 O4 8.3 359.2
C7 N3 C4 C5 189.0 179.3
C8 C7 N3 H71 119.4 121.5
C8 C7 N3 H72 238.6 239.6
N3 C7 C8 O9 91.0 298.4
N3 C7 C8 H81 330.3 180.0
N3 C7 C8 H82 210.9 58.8
H71 C7 N3 H72 119.1 118.1
C2 N3 C4 C7 171.3 180.1
C4 N3 C7 C8 92.9 90.0
C4 N3 C7 H71 333.5 328.5
C4 N3 C7 H72 214.4 210.4
O4 C4 N3 C5 179.4 179.9
N3 C4 C5 C6 1.9 0.3
N3 C4 C5 H5 181.5 180.3
C8 C7 N3 C4 92.9 90.0
N3 C7 C8 H71 239.0 240.3
N3 C7 C8 H72 122.2 119.0
H71 C7 C8 H72 243.2 238.7
O9 C8 C7 H81 120.7 118.4
O9 C8 C7 H82 240.1 239.6
C7 C8 O9 H9 65.3 139.9
H81 C8 C7 H82 119.4 121.2
H71 C7 N3 C4 333.5 328.5
N3 C7 H71 C8 119.2 120.5
N3 C7 H71 H72 238.1 242.5
C8 C7 H71 H72 119.0 122.1
H71 C7 C8 O9 211.9 58.1
H71 C7 C8 H81 91.3 299.7
H71 C7 C8 H82 331.8 178.5
H72 C7 N3 C4 214.4 210.4
N3 C7 H72 C8 239.7 240.2
N3 C7 H72 H71 121.7 117.6
C8 C7 H72 H71 242.0 237.4
H72 C7 C8 O9 328.8 179.5
H72 C7 C8 H81 208.1 61.0
H72 C7 C8 H82 88.7 299.9
O9 C8 C7 H71 211.9 58.1
O9 C8 C7 H72 328.8 179.5
C7 C8 O9 H81 239.4 240.3
C7 C8 O9 H82 121.0 122.1
H81 C8 O9 H82 241.6 241.9
H81 C8 C7 H71 91.3 299.7
H81 C8 C7 H72 208.1 61.0
C7 C8 H81 O9 120.3 119.4
C7 C8 H81 H82 239.1 237.3
O9 C8 H81 H82 118.8 118.0
H81 C8 O9 H9 186.0 259.7
H82 C8 C7 H71 331.8 178.5
H82 C8 C7 H72 88.7 299.9
C7 C8 H82 O9 239.8 239.2
C7 C8 H82 H81 120.4 121.8
O9 C8 H82 H81 240.5 242.5
H82 C8 O9 H9 304.3 17.8
H9 O9 C8 H81 186.0 259.7
H9 O9 C8 H82 304.3 17.8
N3 C4 O4 C5 180.7 180.2
O4 C4 C5 C6 182.5 180.5
O4 C4 C5 H5 2.1 0.4
N1 C6 C5 C4 359.2 0.0
N3 C4 C5 O4 179.4 179.9
C6 C5 C4 H5 180.4 180.1
C4 C5 C6 H6 181.7 179.9
N1 C6 C5 H6 177.5 180.1
C4 C5 C6 H5 179.6 179.9
C4 C5 H5 C6 180.4 180.1
H5 C5 C6 H6 2.2 0.0
N1 C6 H6 C5 182.5 179.9
H6 C6 C5 H5 2.2 0.0
C2' C3' C4' H4' 137.2 146.9
C4' C3' C2' O3' 244.0 242.9
C4' C3' C2' H3' 119.6 123.0
C3' C2' C1' H1' 280.6 268.8
C1' C2' C3' H2' 240.5 242.5
C1' C2' C3' H2'' 120.1 120.8
O3' C3' C2' H3' 235.6 240.1
C2' C3' O3' HO3' 67.6 119.9
H2' C2' C3' H2'' 239.6 238.3
O3' C3' C4' H4' 18.1 29.9
C4' C3' O3' C2' 112.4 112.7
C4' C3' O3' H3' 237.7 236.1
C2' C3' O3' H3' 125.4 123.4
O3' C3' C2' H2' 204.7 201.1
O3' C3' C2' H2'' 325.1 322.8
H3' C3' C4' H4' 256.9 269.7
C4' C3' H3' C2' 246.1 242.9
C4' C3' H3' O3' 120.2 121.7
C2' C3' H3' O3' 234.1 238.7
H3' C3' C2' H2' 329.1 321.1
H3' C3' C2' H2'' 89.5 82.7
H3' C3' O3' HO3' 302.2 356.5
H2' C2' C1' H1' 166.4 151.9
C1' C2' H2' C3' 111.3 112.3
C1' C2' H2' H2'' 234.6 237.3
H2' C2' C3' O3' 204.7 201.1
H2' C2' C3' H3' 329.1 321.1
C3' C2' H2' H2'' 123.3 125.1
H2'' C2' C1' H1' 42.3 31.3
C1' C2' H2'' C3' 245.5 244.4
C1' C2' H2'' H2' 126.7 122.0
H2'' C2' C3' O3' 325.1 322.8
H2'' C2' C3' H3' 89.5 82.7
C3' C2' H2'' H2' 241.1 237.5
HO3' O3' C3' H3' 302.2 356.5