PDB Chemical Component HEK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HEK

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1 C3 1.230 1.212
C2 C3 1.519 1.507
C2 N 1.449 1.465
C3 N1 1.338 1.348
O C1 1.231 1.213
N C1 1.337 1.347
C1 C24 1.499 1.508
N1 C4 1.463 1.464
C4 C 1.557 1.507
C4 C5 1.531 1.530
N4 N3 1.312 1.286
N4 N2 1.345 1.286
C O7 1.202 1.208
C5 N2 1.462 1.465
N3 C7 1.365 1.345
N2 C6 1.342 1.353
O6 C23 1.229 1.215
C7 C6 1.369 1.364
C7 C8 1.472 1.485
C9 C8 1.393 1.392
C9 C10 1.394 1.395
C23 C10 1.495 1.477
C23 O5 1.308 1.347
C8 C13 1.393 1.393
C10 C11 1.395 1.395
C13 C12 1.394 1.392
C11 C12 1.393 1.391
C12 C14 1.476 1.484
C14 N11 1.365 1.345
C14 C15 1.369 1.365
N11 N10 1.313 1.286
C15 N5 1.343 1.352
N10 N5 1.344 1.287
N5 C16 1.460 1.465
C16 C17 1.532 1.530
N6 C17 1.478 1.468
C17 C18 1.559 1.508
C18 O2 1.231 1.212
C18 N7 1.335 1.348
N7 C19 1.447 1.465
C19 C20 1.517 1.507
C20 O3 1.230 1.213
C20 N8 1.333 1.348
N8 C21 1.447 1.465
C21 C22 1.516 1.507
C22 O4 1.235 1.213
C22 N9 1.325 1.349
C2 H1 1.099 1.090
C2 H2 1.100 1.091
C5 H3 1.100 1.090
C5 H4 1.100 1.090
C4 H5 1.100 1.090
C11 H6 1.080 1.080
C13 H7 1.080 1.080
C9 H8 1.080 1.080
N1 H9 0.999 0.971
O5 H10 0.950 0.967
C6 H11 1.080 1.080
N H12 1.000 0.971
C24 H13 1.100 1.090
C24 H14 1.100 1.091
C24 H15 1.100 1.089
N6 H16 1.000 1.009
N6 H17 1.000 1.010
N7 H19 1.000 0.970
N8 H20 0.999 0.970
N9 H21 1.000 0.969
N9 H22 1.000 0.969
C15 H23 1.080 1.080
C16 H24 1.100 1.090
C16 H25 1.100 1.090
C17 H26 1.100 1.090
C19 H27 1.100 1.090
C19 H28 1.100 1.089
C21 H29 1.100 1.090
C21 H30 1.100 1.089
C H31 1.080 1.079

Bond Angles for HEK

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C2 N 117.6 109.5
C2 C3 N1 116.7 120.0
C3 C2 H1 107.4 109.5
C3 C2 H2 107.4 109.5
C2 N C1 121.5 120.0
N C2 H1 107.4 109.5
N C2 H2 107.4 109.5
C2 N H12 119.3 120.0
C3 N1 C4 122.1 120.0
C3 N1 H9 118.9 120.0
N C1 C24 116.1 120.0
C1 C24 H13 109.5 109.5
C1 C24 H14 109.5 109.4
C1 C24 H15 109.5 109.5
N1 C4 C 112.0 109.5
N1 C4 H5 107.1 109.5
C4 C O7 118.4 120.0
C C4 H5 106.0 109.5
C4 C H31 120.8 120.1
C4 C5 H3 109.6 109.5
C4 C5 H4 109.6 109.5
C5 N2 C6 128.4 125.7
N3 C7 C6 107.8 106.2
N3 C7 C8 122.2 126.9
N2 C6 C7 105.1 106.0
N2 C6 H11 127.4 126.9
O6 C23 C10 121.9 120.0
O6 C23 O5 122.9 120.0
C7 C6 H11 127.5 127.0
C8 C9 H8 119.8 120.0
C23 O5 H10 109.5 117.0
C8 C13 H7 119.8 119.9
C10 C11 C12 120.2 120.0
C10 C11 H6 119.9 120.0
C13 C12 C14 120.0 120.0
C11 C12 C14 120.3 120.0
C12 C11 H6 119.9 120.0
C12 C14 N11 122.2 126.9
C12 C14 C15 130.0 126.9
C14 C15 H23 127.5 127.0
C15 N5 C16 128.5 125.8
N10 N5 C16 120.5 125.8
N5 C16 C17 113.2 109.5
N5 C16 H24 108.5 109.5
N5 C16 H25 108.5 109.5
N6 C17 C16 112.8 109.5
C16 C17 C18 108.0 109.5
C17 C16 H24 108.5 109.5
C17 C16 H25 108.5 109.5
C16 C17 H26 107.3 109.5
N6 C17 C18 113.6 109.5
C17 N6 H16 109.5 111.0
C17 N6 H17 109.5 111.0
N6 C17 H26 107.9 109.5
C18 C17 H26 107.0 109.4
C18 N7 C19 122.6 120.0
C18 N7 H19 118.7 120.0
N7 C19 C20 115.7 109.5
C19 N7 H19 118.7 120.0
N7 C19 H27 107.9 109.4
N7 C19 H28 107.9 109.5
C20 C19 H27 107.9 109.5
C20 C19 H28 107.9 109.5
C20 N8 C21 121.9 120.0
C20 N8 H20 119.1 120.0
N8 C21 C22 112.5 109.4
C21 N8 H20 119.0 120.0
N8 C21 H29 108.7 109.5
N8 C21 H30 108.7 109.5
C22 C21 H29 108.7 109.4
C22 C21 H30 108.7 109.5
C22 N9 H21 120.0 120.0
C22 N9 H22 120.0 120.0
H1 C2 H2 109.5 109.4
H3 C5 H4 109.5 109.4
H13 C24 H14 109.4 109.5
H13 C24 H15 109.5 109.6
H14 C24 H15 109.5 109.4
H16 N6 H17 109.5 111.0
H21 N9 H22 120.0 120.0
H24 C16 H25 109.5 109.5
H27 C19 H28 109.5 109.5
H29 C21 H30 109.5 109.5

Torsion Angles for HEK

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C3 C2 H1 282.8 120.0
O1 C3 C2 H2 40.5 240.0
O1 C3 N1 H9 164.5 180.0
C3 C2 N C1 141.2 180.0
N C2 C3 H1 238.8 240.0
N C2 C3 H2 121.2 120.1
C3 C2 N H12 321.2 359.9
C2 C3 N1 C4 163.9 180.0
C2 C3 N1 H9 343.9 360.0
H1 C2 C3 H2 242.3 240.0
N C2 C3 N1 342.3 180.0
C3 C2 N H1 121.2 120.0
C3 C2 N H2 238.8 240.0
C2 N C1 C24 179.9 180.0
H1 C2 N H2 117.7 120.0
N1 C3 C2 N 342.3 180.0
N1 C3 C2 H1 103.4 300.0
N1 C3 C2 H2 221.1 60.0
C3 N1 C4 C 245.9 275.0
C3 N1 C4 H5 1.8 35.0
O C1 C24 H13 0.0 270.1
O C1 C24 H14 120.0 30.0
O C1 C24 H15 240.0 150.0
C1 N C2 H1 20.0 60.0
C1 N C2 H2 262.3 300.1
C2 N C1 H12 180.0 179.9
N C1 C24 H13 179.7 90.0
N C1 C24 H14 299.7 210.0
N C1 C24 H15 59.7 329.9
H13 C24 C1 H14 240.0 240.0
H13 C24 C1 H15 120.0 120.1
H14 C24 C1 H15 240.0 240.1
C3 N1 C4 H9 180.0 179.9
N1 C4 C O7 156.1 0.0
C C4 N1 H5 244.1 240.0
N1 C4 C H31 336.1 180.0
N1 C4 C5 H3 304.7 175.0
N1 C4 C5 H4 64.9 55.0
N1 C4 C H5 116.5 120.0
C C4 C5 H3 177.2 55.0
C C4 C5 H4 297.4 295.0
C3 N1 C4 C5 117.9 155.0
C4 C5 N2 C6 244.7 125.0
H3 C5 C4 H4 239.8 120.0
N4 N2 C6 H11 179.6 180.2
O7 C C4 H5 39.6 240.0
C4 C O7 H31 180.0 180.0
C5 N2 C6 C7 176.2 180.0
C5 N2 C6 H11 356.2 359.9
N2 C6 C7 N3 359.9 359.6
N3 C7 C6 H11 179.9 179.6
N3 C7 C6 N2 359.9 359.6
C7 C6 N2 H11 180.0 180.0
O6 C23 O5 H10 0.0 359.9
N3 C7 C6 C8 182.4 179.6
N2 C6 C7 H11 180.0 180.0
N3 C7 C8 C6 177.3 180.5
N2 C6 C7 C8 177.5 180.0
C7 C8 C9 H8 356.6 0.0
C7 C8 C13 H7 4.1 0.1
N3 C7 C8 C9 0.4 184.9
C9 C8 C13 H7 181.3 180.1
O6 C23 C10 C9 4.0 179.8
C9 C10 C11 H6 180.1 180.0
O6 C23 C10 O5 181.0 180.1
C23 C10 C11 H6 1.4 359.7
O6 C23 O5 C10 179.0 179.9
C8 C13 C12 C14 176.7 180.0
O6 C23 C10 C11 182.7 0.1
C10 C11 C12 C14 182.6 180.0
C12 C11 C10 H6 180.0 180.0
C11 C12 C13 C14 181.9 180.0
C13 C12 C11 H6 180.6 180.0
C13 C12 C14 N11 353.8 5.0
C13 C12 C14 C15 174.0 185.3
C10 C11 C12 H6 180.0 180.0
C13 C12 C11 C14 178.1 180.0
C11 C12 C14 N11 171.9 185.0
C11 C12 C14 C15 352.1 5.3
C14 C12 C11 H6 2.6 0.0
C12 C14 C15 H23 359.9 0.1
C12 C14 N11 C15 180.2 180.2
C12 C14 C15 N11 179.8 179.8
C14 C15 N5 C16 180.8 179.9
C12 C14 N11 N10 180.3 179.9
N11 N10 N5 C16 179.4 179.9
C12 C14 C15 N5 179.9 180.1
N10 N5 C15 C16 179.0 179.8
C15 N5 C16 C17 271.6 124.7
C15 N5 C16 H24 32.1 244.7
C15 N5 C16 H25 151.0 4.7
C15 N5 N10 C16 180.9 180.2
N10 N5 C16 C17 92.7 305.0
N10 N5 C16 H24 213.2 65.0
N10 N5 C16 H25 332.1 185.0
N6 C17 C16 N5 321.7 295.0
N5 C16 C17 C18 195.4 175.0
C17 C16 N5 H24 239.5 240.0
C17 C16 N5 H25 120.6 120.0
N5 C16 C17 H26 80.4 55.0
H24 C16 N5 H25 241.1 240.0
N5 C16 C17 H24 120.5 120.0
N5 C16 C17 H25 239.5 240.0
N6 C17 C16 C18 126.3 120.0
C16 C17 N6 H16 180.0 300.0
C16 C17 N6 H17 300.0 64.0
N6 C17 C16 H26 241.3 240.0
C18 C17 C16 H26 115.0 120.0
H24 C16 C17 H25 118.9 120.0
N5 C16 C17 N6 321.7 295.0
C16 C17 N6 C18 236.7 240.0
N6 C17 C16 H24 201.2 175.0
N6 C17 C16 H25 82.2 55.0
C16 C17 N6 H26 118.3 120.0
C18 C17 N6 H26 241.6 240.0
H16 N6 C17 H17 240.0 236.0
N6 C17 C18 C16 234.1 240.0
C18 C17 C16 H24 74.8 55.0
C18 C17 C16 H25 315.9 295.0
C16 C17 C18 H26 244.8 240.0
C18 C17 N6 H16 303.3 60.0
C18 C17 N6 H17 63.3 184.0
N6 C17 C18 H26 118.9 120.0
C17 C18 N7 C19 162.7 180.0
C17 C18 N7 H19 342.6 360.0
N6 C17 C18 N7 105.1 160.0
C18 N7 C19 C20 78.7 180.0
C19 N7 C18 H19 180.0 180.0
C18 N7 C19 H27 199.6 300.0
C18 N7 C19 H28 317.9 60.0
C18 N7 C19 H19 180.0 180.0
C20 C19 N7 H27 239.1 240.0
C20 C19 N7 H28 120.9 120.0
H27 C19 N7 H28 241.8 240.0
C20 C19 N7 H19 258.8 0.0
N7 C19 C20 H27 120.9 120.0
N7 C19 C20 H28 239.1 240.0
C19 C20 N8 C21 147.3 180.0
C19 C20 N8 H20 327.2 360.0
H27 C19 C20 H28 118.2 120.0
N7 C19 C20 N8 125.8 180.0
C20 N8 C21 C22 282.3 180.0
C21 N8 C20 H20 180.0 180.1
C20 N8 C21 H29 42.7 299.9
C20 N8 C21 H30 161.8 60.0
C20 N8 C21 H20 180.0 179.9
C22 C21 N8 H29 239.6 240.1
C22 C21 N8 H30 120.4 120.0
H29 C21 N8 H30 240.9 240.0
C22 C21 N8 H20 102.3 0.1
N8 C21 C22 H29 120.4 120.0
N8 C21 C22 H30 239.5 239.9
C21 C22 N9 H21 178.0 360.0
C21 C22 N9 H22 358.0 180.0
H29 C21 C22 H30 119.1 120.0
N8 C21 C22 N9 274.7 180.0
H21 N9 C22 H22 180.0 180.0
C3 C2 H1 N 232.6 240.0
H1 C2 C3 N1 103.4 300.0
C3 C2 H1 H2 116.4 120.0
H1 C2 N C1 20.0 60.0
N C2 H1 H2 243.7 240.0
H1 C2 N H12 200.0 239.9
C3 C2 H2 N 127.4 120.1
H2 C2 C3 N1 221.1 60.0
C3 C2 H2 H1 243.7 240.0
H2 C2 N C1 262.3 300.1
N C2 H2 H1 116.3 120.0
H2 C2 N H12 82.3 119.9
C4 C5 H3 H4 120.3 240.0
H3 C5 N2 C6 124.8 245.0
C4 C5 H4 H3 239.7 120.0
H4 C5 N2 C6 4.6 5.0
N1 C4 H5 C 240.2 240.0
H5 C4 C O7 39.6 240.0
H5 C4 C H31 219.6 60.0
H5 C4 C5 H3 61.3 295.0
H5 C4 C5 H4 181.5 175.0
C10 C11 H6 C12 180.0 180.0
H6 C11 C12 C14 2.6 0.0
H7 C13 C12 C14 356.7 359.9
C3 N1 H9 C4 180.0 180.1
H9 N1 C4 C 65.9 95.0
H9 N1 C4 H5 181.8 215.1
N2 C6 H11 C7 180.0 180.0
C2 N H12 C1 180.0 180.1
H12 N C2 H1 200.0 239.9
H12 N C2 H2 82.3 119.9
H12 N C1 C24 359.9 0.1
C1 C24 H13 H14 120.0 119.9
C1 C24 H13 H15 240.0 240.0
H14 C24 H13 H15 120.0 120.0
C1 C24 H14 H13 240.0 240.0
C1 C24 H14 H15 120.0 120.0
H13 C24 H14 H15 240.0 239.9
C1 C24 H15 H13 120.0 120.0
C1 C24 H15 H14 240.0 240.1
H13 C24 H15 H14 120.0 120.0
H16 N6 C17 C16 180.0 300.0
H16 N6 C17 C18 303.3 60.0
C17 N6 H16 H17 120.0 124.0
H16 N6 C17 H26 61.7 180.0
H17 N6 C17 C16 300.0 64.0
H17 N6 C17 C18 63.3 184.0
C17 N6 H17 H16 240.0 236.0
H17 N6 C17 H26 181.7 304.0
C18 N7 H19 C19 180.0 180.0
H19 N7 C19 C20 258.8 0.0
H19 N7 C19 H27 19.7 120.0
H19 N7 C19 H28 137.9 240.0
C20 N8 H20 C21 180.0 180.1
H20 N8 C21 C22 102.3 0.1
H20 N8 C21 H29 222.7 120.0
H20 N8 C21 H30 341.9 240.0
C22 N9 H21 H22 180.0 180.0
C22 N9 H22 H21 180.0 180.0
H23 C15 N5 C16 0.8 360.0
N5 C16 H24 C17 236.6 240.0
N5 C16 H24 H25 118.3 120.0
H24 C16 C17 C18 74.8 55.0
C17 C16 H24 H25 241.7 240.0
H24 C16 C17 H26 319.9 295.0
N5 C16 H25 C17 123.4 120.0
N5 C16 H25 H24 241.7 240.0
H25 C16 C17 C18 315.9 295.0
C17 C16 H25 H24 118.3 120.0
H25 C16 C17 H26 200.9 175.0
N6 C17 H26 C16 121.8 120.0
C16 C17 H26 C18 115.6 120.0
H26 C17 C16 H24 319.9 295.0
H26 C17 C16 H25 200.9 175.0
N6 C17 H26 C18 237.5 240.0
H26 C17 N6 H16 61.7 180.0
H26 C17 N6 H17 181.7 304.0
N7 C19 H27 C20 234.3 240.0
H27 C19 N7 H19 19.7 120.0
N7 C19 H27 H28 117.2 120.0
C20 C19 H27 H28 242.8 240.0
N7 C19 H28 C20 125.6 120.0
H28 C19 N7 H19 137.9 240.0
N7 C19 H28 H27 242.8 240.0
C20 C19 H28 H27 117.2 120.0
N8 C21 H29 C22 237.3 240.1
H29 C21 N8 H20 222.7 120.0
N8 C21 H29 H30 118.6 120.1
C22 C21 H29 H30 241.4 240.0
N8 C21 H30 C22 122.8 120.0
H30 C21 N8 H20 341.9 240.0
N8 C21 H30 H29 241.4 240.0
C22 C21 H30 H29 118.6 120.0
C4 C H31 O7 180.0 180.0
H31 C C4 H5 219.6 60.0