PDB Chemical Component HEF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HEF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.394 |
1.346 |
| N1 |
C6 |
1.374 |
1.374 |
| N1 |
CM |
1.475 |
1.464 |
| C2 |
O2 |
1.232 |
1.216 |
| C2 |
N3 |
1.387 |
1.345 |
| N3 |
C4 |
1.390 |
1.347 |
| N3 |
HN3 |
1.020 |
0.970 |
| C4 |
O4 |
1.230 |
1.220 |
| C4 |
C5 |
1.457 |
1.403 |
| C5 |
C6 |
1.354 |
1.368 |
| C5 |
CM5 |
1.530 |
1.506 |
| C6 |
S' |
1.822 |
1.761 |
| CM5 |
HM51 |
1.115 |
1.091 |
| CM5 |
HM52 |
1.115 |
1.090 |
| CM5 |
HM53 |
1.115 |
1.090 |
| CM |
OM |
1.430 |
1.429 |
| CM |
HM1 |
1.114 |
1.091 |
| CM |
HM2 |
1.115 |
1.089 |
| OM |
CE1 |
1.433 |
1.429 |
| CE1 |
CE2 |
1.526 |
1.530 |
| CE1 |
HE11 |
1.114 |
1.090 |
| CE1 |
HE12 |
1.115 |
1.090 |
| CE2 |
OE |
1.418 |
1.429 |
| CE2 |
HE21 |
1.115 |
1.090 |
| CE2 |
HE22 |
1.116 |
1.090 |
| OE |
HOE |
0.950 |
0.967 |
| S' |
C1' |
1.821 |
1.762 |
| C1' |
C2' |
1.390 |
1.390 |
| C1' |
C6' |
1.389 |
1.388 |
| C2' |
C3' |
1.391 |
1.381 |
| C2' |
H2' |
1.103 |
1.080 |
| C3' |
C4' |
1.391 |
1.382 |
| C3' |
H3' |
1.103 |
1.080 |
| C4' |
C5' |
1.389 |
1.383 |
| C4' |
H4' |
1.103 |
1.081 |
| C5' |
C6' |
1.394 |
1.381 |
| C5' |
H5' |
1.103 |
1.079 |
| C6' |
H6' |
1.103 |
1.080 |
Bond Angles for HEF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.8 |
120.4 |
| C2 |
N1 |
CM |
118.0 |
119.8 |
| N1 |
C2 |
O2 |
122.5 |
119.5 |
| N1 |
C2 |
N3 |
115.7 |
121.0 |
| C6 |
N1 |
CM |
120.2 |
119.8 |
| N1 |
C6 |
C5 |
121.5 |
119.4 |
| N1 |
C6 |
S' |
118.1 |
120.3 |
| N1 |
CM |
OM |
111.4 |
109.5 |
| N1 |
CM |
HM1 |
111.5 |
109.4 |
| N1 |
CM |
HM2 |
111.5 |
109.5 |
| O2 |
C2 |
N3 |
121.8 |
119.5 |
| C2 |
N3 |
C4 |
126.0 |
120.6 |
| C2 |
N3 |
HN3 |
116.9 |
119.7 |
| C4 |
N3 |
HN3 |
117.1 |
119.7 |
| N3 |
C4 |
O4 |
120.1 |
120.2 |
| N3 |
C4 |
C5 |
114.5 |
119.6 |
| O4 |
C4 |
C5 |
125.4 |
120.2 |
| C4 |
C5 |
C6 |
120.5 |
119.1 |
| C4 |
C5 |
CM5 |
119.5 |
120.5 |
| C6 |
C5 |
CM5 |
120.0 |
120.5 |
| C5 |
C6 |
S' |
120.4 |
120.3 |
| C5 |
CM5 |
HM51 |
119.5 |
109.5 |
| C5 |
CM5 |
HM52 |
108.6 |
109.5 |
| C5 |
CM5 |
HM53 |
108.6 |
109.5 |
| C6 |
S' |
C1' |
106.0 |
100.0 |
| HM51 |
CM5 |
HM52 |
108.7 |
109.4 |
| HM51 |
CM5 |
HM53 |
108.6 |
109.5 |
| HM52 |
CM5 |
HM53 |
101.4 |
109.5 |
| OM |
CM |
HM1 |
111.5 |
109.5 |
| OM |
CM |
HM2 |
111.5 |
109.5 |
| CM |
OM |
CE1 |
111.5 |
106.8 |
| HM1 |
CM |
HM2 |
98.9 |
109.4 |
| OM |
CE1 |
CE2 |
111.7 |
109.5 |
| OM |
CE1 |
HE11 |
111.4 |
109.5 |
| OM |
CE1 |
HE12 |
111.3 |
109.4 |
| CE2 |
CE1 |
HE11 |
111.4 |
109.5 |
| CE2 |
CE1 |
HE12 |
111.4 |
109.5 |
| CE1 |
CE2 |
OE |
111.7 |
109.4 |
| CE1 |
CE2 |
HE21 |
111.4 |
109.5 |
| CE1 |
CE2 |
HE22 |
111.3 |
109.5 |
| HE11 |
CE1 |
HE12 |
99.0 |
109.5 |
| OE |
CE2 |
HE21 |
111.4 |
109.5 |
| OE |
CE2 |
HE22 |
111.4 |
109.5 |
| CE2 |
OE |
HOE |
111.7 |
106.8 |
| HE21 |
CE2 |
HE22 |
99.0 |
109.5 |
| S' |
C1' |
C2' |
119.8 |
120.1 |
| S' |
C1' |
C6' |
120.4 |
120.1 |
| C2' |
C1' |
C6' |
119.8 |
119.8 |
| C1' |
C2' |
C3' |
120.2 |
119.9 |
| C1' |
C2' |
H2' |
119.9 |
120.0 |
| C1' |
C6' |
C5' |
120.1 |
120.0 |
| C1' |
C6' |
H6' |
119.8 |
120.0 |
| C3' |
C2' |
H2' |
119.9 |
120.0 |
| C2' |
C3' |
C4' |
120.0 |
120.0 |
| C2' |
C3' |
H3' |
119.9 |
120.0 |
| C4' |
C3' |
H3' |
120.0 |
120.0 |
| C3' |
C4' |
C5' |
119.9 |
120.2 |
| C3' |
C4' |
H4' |
120.1 |
119.9 |
| C5' |
C4' |
H4' |
120.0 |
119.9 |
| C4' |
C5' |
C6' |
120.0 |
120.0 |
| C4' |
C5' |
H5' |
119.9 |
120.0 |
| C6' |
C5' |
H5' |
120.1 |
120.0 |
| C5' |
C6' |
H6' |
120.1 |
120.0 |
Torsion Angles for HEF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
CM |
178.7 |
179.9 |
| C2 |
N1 |
C6 |
C5 |
359.6 |
0.0 |
| C2 |
N1 |
C6 |
S' |
179.0 |
180.0 |
| C2 |
N1 |
CM |
OM |
70.8 |
255.5 |
| C2 |
N1 |
CM |
HM1 |
196.1 |
15.6 |
| C2 |
N1 |
CM |
HM2 |
305.5 |
135.5 |
| O2 |
C2 |
N1 |
N3 |
180.2 |
180.1 |
| N1 |
C2 |
N3 |
C4 |
0.0 |
359.8 |
| N1 |
C2 |
N3 |
HN3 |
180.0 |
180.0 |
| C2 |
N1 |
C6 |
CM |
181.4 |
180.1 |
| C6 |
N1 |
C2 |
O2 |
180.4 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
0.3 |
359.9 |
| C6 |
N1 |
CM |
OM |
252.1 |
75.6 |
| C6 |
N1 |
CM |
HM1 |
17.4 |
195.6 |
| C6 |
N1 |
CM |
HM2 |
126.8 |
315.6 |
| C4 |
C5 |
C6 |
N1 |
0.2 |
0.3 |
| N1 |
C6 |
C5 |
CM5 |
181.8 |
180.0 |
| C5 |
C6 |
N1 |
S' |
180.6 |
180.0 |
| N1 |
C6 |
S' |
C1' |
255.6 |
70.5 |
| C2 |
N1 |
CM |
C6 |
178.7 |
179.9 |
| CM |
N1 |
C2 |
O2 |
1.8 |
0.1 |
| CM |
N1 |
C2 |
N3 |
181.6 |
180.0 |
| CM |
N1 |
C6 |
C5 |
178.3 |
179.9 |
| CM |
N1 |
C6 |
S' |
357.6 |
359.9 |
| OM |
CM |
N1 |
HM1 |
234.7 |
240.0 |
| OM |
CM |
N1 |
HM2 |
125.3 |
120.0 |
| N1 |
CM |
OM |
CE1 |
139.7 |
90.0 |
| HM1 |
CM |
N1 |
HM2 |
250.5 |
240.1 |
| O2 |
C2 |
N1 |
C6 |
180.4 |
180.0 |
| O2 |
C2 |
N1 |
CM |
1.8 |
0.1 |
| N1 |
C2 |
O2 |
N3 |
179.8 |
179.9 |
| O2 |
C2 |
N3 |
C4 |
179.8 |
179.7 |
| O2 |
C2 |
N3 |
HN3 |
359.9 |
359.9 |
| N3 |
C2 |
N1 |
C6 |
0.3 |
359.9 |
| N3 |
C2 |
N1 |
CM |
181.6 |
180.0 |
| N1 |
C2 |
N3 |
O2 |
180.2 |
180.1 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
179.8 |
| C2 |
N3 |
C4 |
O4 |
179.8 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
359.8 |
0.5 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.2 |
| O4 |
C4 |
N3 |
C5 |
179.9 |
179.5 |
| N3 |
C4 |
C5 |
C6 |
0.1 |
359.4 |
| N3 |
C4 |
C5 |
CM5 |
178.5 |
179.8 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
179.8 |
| HN3 |
N3 |
C4 |
O4 |
359.8 |
359.8 |
| HN3 |
N3 |
C4 |
C5 |
179.8 |
180.3 |
| O4 |
C4 |
N3 |
HN3 |
359.8 |
359.8 |
| N3 |
C4 |
O4 |
C5 |
180.1 |
180.5 |
| O4 |
C4 |
C5 |
C6 |
180.1 |
179.9 |
| O4 |
C4 |
C5 |
CM5 |
358.5 |
0.3 |
| N1 |
C6 |
C5 |
C4 |
0.2 |
0.3 |
| C5 |
C4 |
N3 |
HN3 |
179.8 |
180.3 |
| N3 |
C4 |
C5 |
O4 |
179.9 |
179.5 |
| C6 |
C5 |
C4 |
CM5 |
181.6 |
179.6 |
| C4 |
C5 |
C6 |
S' |
180.8 |
180.3 |
| C4 |
C5 |
CM5 |
HM51 |
180.0 |
359.7 |
| C4 |
C5 |
CM5 |
HM52 |
305.3 |
119.7 |
| C4 |
C5 |
CM5 |
HM53 |
54.7 |
239.7 |
| C5 |
C6 |
N1 |
CM |
178.3 |
179.9 |
| N1 |
C6 |
C5 |
S' |
179.3 |
180.0 |
| C4 |
C5 |
C6 |
CM5 |
178.4 |
180.4 |
| C6 |
C5 |
CM5 |
HM51 |
358.4 |
180.0 |
| C6 |
C5 |
CM5 |
HM52 |
123.7 |
300.0 |
| C6 |
C5 |
CM5 |
HM53 |
233.1 |
60.1 |
| C5 |
C6 |
S' |
C1' |
75.0 |
250.5 |
| C4 |
C5 |
CM5 |
C6 |
181.6 |
179.6 |
| CM5 |
C5 |
C6 |
S' |
2.5 |
360.0 |
| HM51 |
CM5 |
C5 |
HM52 |
234.7 |
240.0 |
| HM51 |
CM5 |
C5 |
HM53 |
125.2 |
120.0 |
| HM52 |
CM5 |
C5 |
HM53 |
250.6 |
239.9 |
| S' |
C6 |
N1 |
CM |
357.6 |
359.9 |
| N1 |
C6 |
S' |
C5 |
180.6 |
180.0 |
| S' |
C6 |
C5 |
CM5 |
2.5 |
360.0 |
| C6 |
S' |
C1' |
C2' |
183.8 |
186.8 |
| C6 |
S' |
C1' |
C6' |
1.8 |
6.4 |
| C5 |
CM5 |
HM51 |
HM52 |
125.3 |
120.0 |
| C5 |
CM5 |
HM51 |
HM53 |
234.8 |
240.0 |
| HM52 |
CM5 |
HM51 |
HM53 |
109.5 |
120.0 |
| C5 |
CM5 |
HM52 |
HM51 |
228.6 |
240.0 |
| C5 |
CM5 |
HM52 |
HM53 |
114.3 |
120.0 |
| HM51 |
CM5 |
HM52 |
HM53 |
245.7 |
240.0 |
| C5 |
CM5 |
HM53 |
HM51 |
131.4 |
120.0 |
| C5 |
CM5 |
HM53 |
HM52 |
245.7 |
239.9 |
| HM51 |
CM5 |
HM53 |
HM52 |
114.4 |
120.0 |
| N1 |
CM |
OM |
HM1 |
125.3 |
120.0 |
| N1 |
CM |
OM |
HM2 |
234.7 |
240.0 |
| HM1 |
CM |
OM |
HM2 |
109.5 |
120.0 |
| CM |
OM |
CE1 |
CE2 |
168.2 |
180.0 |
| CM |
OM |
CE1 |
HE11 |
293.4 |
300.0 |
| CM |
OM |
CE1 |
HE12 |
42.9 |
60.0 |
| N1 |
CM |
HM1 |
OM |
234.8 |
240.0 |
| N1 |
CM |
HM1 |
HM2 |
117.4 |
120.0 |
| OM |
CM |
HM1 |
HM2 |
242.6 |
240.0 |
| HM1 |
CM |
OM |
CE1 |
14.4 |
330.0 |
| N1 |
CM |
HM2 |
OM |
125.2 |
120.0 |
| N1 |
CM |
HM2 |
HM1 |
242.6 |
240.1 |
| OM |
CM |
HM2 |
HM1 |
117.4 |
120.0 |
| HM2 |
CM |
OM |
CE1 |
264.9 |
210.0 |
| CE1 |
OM |
CM |
HM1 |
14.4 |
330.0 |
| CE1 |
OM |
CM |
HM2 |
264.9 |
210.0 |
| CE2 |
CE1 |
OM |
HE11 |
234.7 |
240.0 |
| CE2 |
CE1 |
OM |
HE12 |
125.3 |
120.0 |
| OM |
CE1 |
CE2 |
OE |
43.3 |
60.0 |
| OM |
CE1 |
CE2 |
HE21 |
168.6 |
180.0 |
| OM |
CE1 |
CE2 |
HE22 |
278.1 |
300.1 |
| HE11 |
CE1 |
OM |
HE12 |
250.5 |
240.0 |
| OM |
CE1 |
CE2 |
HE11 |
125.2 |
120.0 |
| OM |
CE1 |
CE2 |
HE12 |
234.8 |
240.0 |
| HE11 |
CE1 |
CE2 |
HE12 |
109.5 |
120.0 |
| OE |
CE2 |
CE1 |
HE21 |
234.7 |
240.0 |
| OE |
CE2 |
CE1 |
HE22 |
125.2 |
120.0 |
| CE1 |
CE2 |
OE |
HOE |
180.1 |
180.0 |
| HE21 |
CE2 |
CE1 |
HE22 |
250.5 |
240.0 |
| OM |
CE1 |
HE11 |
CE2 |
234.6 |
240.0 |
| OM |
CE1 |
HE11 |
HE12 |
117.2 |
120.0 |
| CE2 |
CE1 |
HE11 |
HE12 |
242.7 |
240.0 |
| HE11 |
CE1 |
CE2 |
OE |
278.1 |
300.0 |
| HE11 |
CE1 |
CE2 |
HE21 |
43.4 |
60.0 |
| HE11 |
CE1 |
CE2 |
HE22 |
152.8 |
180.0 |
| OM |
CE1 |
HE12 |
CE2 |
125.4 |
120.0 |
| OM |
CE1 |
HE12 |
HE11 |
242.7 |
240.0 |
| CE2 |
CE1 |
HE12 |
HE11 |
117.3 |
120.0 |
| HE12 |
CE1 |
CE2 |
OE |
168.5 |
180.0 |
| HE12 |
CE1 |
CE2 |
HE21 |
293.8 |
300.0 |
| HE12 |
CE1 |
CE2 |
HE22 |
43.3 |
60.0 |
| OE |
CE2 |
CE1 |
HE11 |
278.1 |
300.0 |
| OE |
CE2 |
CE1 |
HE12 |
168.5 |
180.0 |
| CE1 |
CE2 |
OE |
HE21 |
125.3 |
120.0 |
| CE1 |
CE2 |
OE |
HE22 |
234.8 |
240.1 |
| HE21 |
CE2 |
OE |
HE22 |
109.5 |
120.1 |
| HE21 |
CE2 |
CE1 |
HE11 |
43.4 |
60.0 |
| HE21 |
CE2 |
CE1 |
HE12 |
293.8 |
300.0 |
| CE1 |
CE2 |
HE21 |
OE |
234.5 |
240.1 |
| CE1 |
CE2 |
HE21 |
HE22 |
117.2 |
120.0 |
| OE |
CE2 |
HE21 |
HE22 |
242.7 |
240.0 |
| HE21 |
CE2 |
OE |
HOE |
54.8 |
60.0 |
| HE22 |
CE2 |
CE1 |
HE11 |
152.8 |
180.0 |
| HE22 |
CE2 |
CE1 |
HE12 |
43.3 |
60.0 |
| CE1 |
CE2 |
HE22 |
OE |
125.4 |
119.9 |
| CE1 |
CE2 |
HE22 |
HE21 |
242.8 |
240.0 |
| OE |
CE2 |
HE22 |
HE21 |
117.3 |
120.0 |
| HE22 |
CE2 |
OE |
HOE |
305.3 |
299.9 |
| HOE |
OE |
CE2 |
HE21 |
54.8 |
60.0 |
| HOE |
OE |
CE2 |
HE22 |
305.3 |
299.9 |
| C2' |
C1' |
S' |
C6' |
182.1 |
180.3 |
| S' |
C1' |
C2' |
C3' |
177.8 |
180.0 |
| S' |
C1' |
C2' |
H2' |
357.7 |
360.0 |
| S' |
C1' |
C6' |
C5' |
182.3 |
179.7 |
| S' |
C1' |
C6' |
H6' |
2.2 |
0.3 |
| S' |
C1' |
C2' |
C6' |
177.9 |
179.7 |
| C2' |
C1' |
C6' |
C5' |
0.2 |
359.3 |
| C2' |
C1' |
C6' |
H6' |
180.2 |
179.9 |
| C3' |
C2' |
C1' |
H2' |
180.1 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
0.1 |
360.0 |
| C1' |
C2' |
C3' |
H3' |
180.0 |
180.0 |
| S' |
C1' |
C6' |
C2' |
182.1 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
359.9 |
0.3 |
| C6' |
C1' |
C2' |
H2' |
179.8 |
180.3 |
| C4' |
C5' |
C6' |
C1' |
359.8 |
0.7 |
| C1' |
C6' |
C5' |
H5' |
179.9 |
180.3 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.4 |
| C3' |
C2' |
C1' |
C6' |
359.9 |
0.3 |
| C1' |
C2' |
C3' |
H2' |
179.9 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
180.1 |
180.0 |
| C2' |
C3' |
C4' |
C5' |
359.9 |
0.0 |
| C2' |
C3' |
C4' |
H4' |
179.9 |
180.0 |
| H2' |
C2' |
C1' |
C6' |
179.8 |
180.3 |
| C1' |
C2' |
H2' |
C3' |
180.1 |
180.0 |
| H2' |
C2' |
C3' |
C4' |
180.1 |
180.0 |
| H2' |
C2' |
C3' |
H3' |
0.1 |
0.0 |
| C4' |
C3' |
C2' |
H2' |
180.1 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
179.9 |
180.0 |
| C5' |
C4' |
C3' |
H4' |
180.0 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
0.1 |
359.7 |
| C3' |
C4' |
C5' |
H5' |
180.1 |
180.0 |
| H3' |
C3' |
C2' |
H2' |
0.1 |
0.0 |
| C2' |
C3' |
H3' |
C4' |
180.1 |
180.0 |
| H3' |
C3' |
C4' |
C5' |
180.0 |
180.0 |
| H3' |
C3' |
C4' |
H4' |
359.9 |
360.0 |
| C1' |
C6' |
C5' |
C4' |
359.8 |
0.7 |
| C5' |
C4' |
C3' |
H3' |
180.0 |
180.0 |
| C3' |
C4' |
C5' |
H4' |
180.0 |
180.0 |
| C6' |
C5' |
C4' |
H5' |
180.1 |
179.6 |
| C4' |
C5' |
C6' |
H6' |
179.8 |
180.1 |
| H4' |
C4' |
C3' |
H3' |
359.9 |
360.0 |
| C3' |
C4' |
H4' |
C5' |
180.0 |
180.0 |
| H4' |
C4' |
C5' |
C6' |
180.2 |
179.7 |
| H4' |
C4' |
C5' |
H5' |
0.1 |
0.0 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.6 |
| C6' |
C5' |
C4' |
H4' |
180.2 |
179.7 |
| C4' |
C5' |
C6' |
H5' |
179.9 |
180.4 |
| H5' |
C5' |
C4' |
H4' |
0.1 |
0.0 |
| C4' |
C5' |
H5' |
C6' |
180.1 |
179.6 |
| H5' |
C5' |
C6' |
H6' |
359.9 |
359.7 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.4 |
| H6' |
C6' |
C5' |
H5' |
359.9 |
359.7 |