PDB Chemical Component HEE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HEE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.510	1.529
C1	P	1.610	1.822
C1	H11	1.114	1.089
C1	H12	1.115	1.090
C2	C3	1.509	1.529
C2	H21	1.115	1.089
C2	H22	1.115	1.090
C3	C4	1.509	1.529
C3	H31	1.115	1.089
C3	H32	1.116	1.090
C4	C5	1.515	1.529
C4	H41	1.116	1.089
C4	H42	1.115	1.090
C5	C6	1.499	1.529
C5	H51	1.115	1.089
C5	H52	1.114	1.090
C6	H61	1.115	1.090
C6	H62	1.115	1.090
C6	H63	1.115	1.089
P	O1P	1.597	1.480
P	O2P	1.622	1.610
P	O3P	1.615	1.609
O2P	C1'	1.436	1.428
O3P	HOP3	0.950	0.968
C1'	C2'	1.511	1.529
C1'	H1'1	1.115	1.090
C1'	H1'2	1.115	1.090
C2'	H2'1	1.115	1.091
C2'	H2'2	1.115	1.088
C2'	H2'3	1.115	1.090

Bond Angles for HEE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	P	120.3	109.5
C2	C1	H11	108.3	109.5
C2	C1	H12	108.3	109.4
C1	C2	C3	110.8	109.5
C1	C2	H21	111.8	109.5
C1	C2	H22	111.7	109.4
P	C1	H11	108.3	109.5
P	C1	H12	108.3	109.4
C1	P	O1P	107.3	109.4
C1	P	O2P	106.0	109.5
C1	P	O3P	109.5	109.5
H11	C1	H12	101.7	109.5
C3	C2	H21	111.7	109.5
C3	C2	H22	111.7	109.4
C2	C3	C4	111.4	109.5
C2	C3	H31	111.5	109.5
C2	C3	H32	111.5	109.4
H21	C2	H22	98.6	109.5
C4	C3	H31	111.5	109.5
C4	C3	H32	111.5	109.4
C3	C4	C5	111.5	109.5
C3	C4	H41	111.5	109.5
C3	C4	H42	111.4	109.4
H31	C3	H32	98.9	109.5
C5	C4	H41	111.5	109.5
C5	C4	H42	111.5	109.4
C4	C5	C6	110.3	109.5
C4	C5	H51	111.9	109.5
C4	C5	H52	111.9	109.4
H41	C4	H42	98.8	109.5
C6	C5	H51	111.9	109.5
C6	C5	H52	111.9	109.4
C5	C6	H61	110.3	109.5
C5	C6	H62	112.0	109.4
C5	C6	H63	111.9	109.5
H51	C5	H52	98.5	109.5
H61	C6	H62	111.9	109.4
H61	C6	H63	111.9	109.5
H62	C6	H63	98.4	109.5
O1P	P	O2P	113.7	109.5
O1P	P	O3P	107.6	109.4
O2P	P	O3P	112.6	109.5
P	O2P	C1'	123.1	106.9
P	O3P	HOP3	109.5	106.7
O2P	C1'	C2'	109.7	109.5
O2P	C1'	H1'1	112.1	109.5
O2P	C1'	H1'2	112.1	109.4
C2'	C1'	H1'1	112.2	109.5
C2'	C1'	H1'2	112.1	109.4
C1'	C2'	H2'1	109.7	109.5
C1'	C2'	H2'2	112.1	109.6
C1'	C2'	H2'3	112.1	109.4
H1'1	C1'	H1'2	98.3	109.4
H2'1	C2'	H2'2	112.2	109.5
H2'1	C2'	H2'3	112.2	109.4
H2'2	C2'	H2'3	98.3	109.4

Torsion Angles for HEE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
P	C1	C2	H11	234.8	239.9
P	C1	C2	H12	125.3	120.0
C2	C1	P	O1P	76.2	60.0
C2	C1	P	O2P	198.0	180.0
C2	C1	P	O3P	319.7	300.1
H11	C1	C2	H12	250.5	240.0
C3	C2	C1	H21	234.7	120.1
C3	C2	C1	H22	125.3	240.1
C1	C2	C3	C4	223.4	180.0
C1	C2	C3	H31	348.7	59.9
C1	C2	C3	H32	98.2	300.0
H21	C2	C1	H22	250.5	120.0
C2	C1	P	H11	125.2	120.1
C2	C1	P	H12	234.7	240.0
P	C1	C2	C3	284.7	180.0
P	C1	C2	H21	49.9	59.9
P	C1	C2	H22	159.4	300.0
H11	C1	P	H12	109.5	120.0
O1P	P	C1	O2P	238.2	240.0
O1P	P	C1	O3P	116.5	120.0
O2P	P	C1	O3P	238.3	240.0
C1	P	O2P	C1'	33.4	180.0
C1	P	O3P	HOP3	180.0	300.0
C2	C1	H11	P	228.0	239.9
C2	C1	H11	H12	114.0	120.0
H11	C1	C2	C3	49.9	300.1
H11	C1	C2	H21	175.2	180.0
H11	C1	C2	H22	284.6	60.0
P	C1	H11	H12	246.0	240.0
H11	C1	P	O1P	311.0	300.0
H11	C1	P	O2P	72.8	60.0
H11	C1	P	O3P	194.5	180.0
C2	C1	H12	P	132.1	120.0
C2	C1	H12	H11	246.1	240.0
H12	C1	C2	C3	159.4	60.1
H12	C1	C2	H21	284.7	300.0
H12	C1	C2	H22	34.1	180.0
P	C1	H12	H11	114.0	120.0
H12	C1	P	O1P	201.5	180.0
H12	C1	P	O2P	323.2	300.0
H12	C1	P	O3P	85.0	60.0
C3	C2	C1	P	284.7	180.0
C3	C2	C1	H11	49.9	300.1
C3	C2	C1	H12	159.4	60.1
C1	C2	C3	H21	125.3	239.9
C1	C2	C3	H22	234.7	120.0
H21	C2	C3	H22	109.4	240.0
C4	C3	C2	H31	234.7	120.1
C4	C3	C2	H32	125.3	240.0
C2	C3	C4	C5	83.3	180.0
C2	C3	C4	H41	208.5	59.9
C2	C3	C4	H42	317.9	299.9
H31	C3	C2	H32	250.5	120.0
H21	C2	C1	P	49.9	59.9
H21	C2	C1	H11	175.2	180.0
H21	C2	C1	H12	284.7	300.0
C1	C2	H21	C3	235.2	120.1
C1	C2	H21	H22	117.6	240.0
C3	C2	H21	H22	242.4	119.9
H21	C2	C3	C4	98.1	300.1
H21	C2	C3	H31	223.4	180.0
H21	C2	C3	H32	332.9	60.0
H22	C2	C1	P	159.4	300.0
H22	C2	C1	H11	284.6	60.0
H22	C2	C1	H12	34.1	180.0
C1	C2	H22	C3	124.8	240.0
C1	C2	H22	H21	242.3	120.0
C3	C2	H22	H21	117.6	240.0
H22	C2	C3	C4	348.7	60.0
H22	C2	C3	H31	114.0	300.0
H22	C2	C3	H32	223.5	180.0
C4	C3	C2	H21	98.1	300.1
C4	C3	C2	H22	348.7	60.0
C2	C3	C4	H31	125.3	239.9
C2	C3	C4	H32	234.8	119.9
H31	C3	C4	H32	109.4	240.0
C5	C4	C3	H41	234.7	120.1
C5	C4	C3	H42	125.3	240.1
C3	C4	C5	C6	122.2	180.0
C3	C4	C5	H51	247.5	59.9
C3	C4	C5	H52	357.0	300.0
H41	C4	C3	H42	250.6	120.0
H31	C3	C2	H21	223.4	180.0
H31	C3	C2	H22	114.0	300.0
C2	C3	H31	C4	234.8	120.1
C2	C3	H31	H32	117.4	240.1
C4	C3	H31	H32	242.6	120.0
H31	C3	C4	C5	317.9	300.1
H31	C3	C4	H41	83.2	180.0
H31	C3	C4	H42	192.6	60.0
H32	C3	C2	H21	332.9	60.0
H32	C3	C2	H22	223.5	180.0
C2	C3	H32	C4	125.2	240.0
C2	C3	H32	H31	242.6	120.0
C4	C3	H32	H31	117.4	240.0
H32	C3	C4	C5	208.5	60.1
H32	C3	C4	H41	333.8	300.0
H32	C3	C4	H42	83.2	180.0
C5	C4	C3	H31	317.9	300.1
C5	C4	C3	H32	208.5	60.1
C3	C4	C5	H41	125.3	239.9
C3	C4	C5	H42	234.7	120.0
H41	C4	C5	H42	109.4	240.0
C6	C5	C4	H51	234.7	120.1
C6	C5	C4	H52	125.2	240.0
C4	C5	C6	H61	180.0	180.0
C4	C5	C6	H62	305.3	299.9
C4	C5	C6	H63	54.7	59.9
H51	C5	C4	H52	250.5	120.0
H41	C4	C3	H31	83.2	180.0
H41	C4	C3	H32	333.8	300.0
C3	C4	H41	C5	234.7	120.1
C3	C4	H41	H42	117.3	240.0
C5	C4	H41	H42	242.6	119.9
H41	C4	C5	C6	356.9	300.1
H41	C4	C5	H51	122.2	180.0
H41	C4	C5	H52	231.7	60.0
H42	C4	C3	H31	192.6	60.0
H42	C4	C3	H32	83.2	180.0
C3	C4	H42	C5	125.3	240.0
C3	C4	H42	H41	242.7	120.0
C5	C4	H42	H41	117.3	240.0
H42	C4	C5	C6	247.5	60.0
H42	C4	C5	H51	12.8	300.0
H42	C4	C5	H52	122.3	180.0
C6	C5	C4	H41	356.9	300.1
C6	C5	C4	H42	247.5	60.0
C4	C5	C6	H51	125.2	239.9
C4	C5	C6	H52	234.8	119.9
H51	C5	C6	H52	109.5	240.0
H61	C6	C5	H62	234.7	240.1
H61	C6	C5	H63	125.3	120.1
H62	C6	C5	H63	250.6	240.0
H51	C5	C4	H41	122.2	180.0
H51	C5	C4	H42	12.8	300.0
C4	C5	H51	C6	235.7	120.1
C4	C5	H51	H52	117.8	240.1
C6	C5	H51	H52	242.1	120.0
H51	C5	C6	H61	54.8	300.1
H51	C5	C6	H62	180.1	60.0
H51	C5	C6	H63	289.5	180.0
H52	C5	C4	H41	231.7	60.0
H52	C5	C4	H42	122.3	180.0
C4	C5	H52	C6	124.3	240.0
C4	C5	H52	H51	242.2	120.0
C6	C5	H52	H51	117.9	240.0
H52	C5	C6	H61	305.2	60.1
H52	C5	C6	H62	70.5	180.0
H52	C5	C6	H63	180.0	300.0
H61	C6	C5	H51	54.8	300.1
H61	C6	C5	H52	305.2	60.1
C5	C6	H61	H62	125.3	119.9
C5	C6	H61	H63	234.7	239.9
H62	C6	H61	H63	109.4	120.0
H62	C6	C5	H51	180.1	60.0
H62	C6	C5	H52	70.5	180.0
C5	C6	H62	H61	235.6	240.0
C5	C6	H62	H63	117.8	120.0
H61	C6	H62	H63	242.2	240.0
H63	C6	C5	H51	289.5	180.0
H63	C6	C5	H52	180.0	300.0
C5	C6	H63	H61	124.4	120.1
C5	C6	H63	H62	242.2	240.0
H61	C6	H63	H62	117.8	119.9
O1P	P	C1	H11	311.0	300.0
O1P	P	C1	H12	201.5	180.0
C1	P	O1P	O2P	116.9	120.0
C1	P	O1P	O3P	242.3	240.0
O2P	P	O1P	O3P	125.4	120.0
O1P	P	O2P	C1'	151.0	300.0
O1P	P	O3P	HOP3	63.7	180.0
O2P	P	C1	H11	72.8	60.0
O2P	P	C1	H12	323.2	300.0
C1	P	O2P	O1P	242.4	240.0
C1	P	O2P	O3P	119.7	120.1
O1P	P	O2P	O3P	237.3	240.0
O2P	P	O3P	HOP3	297.7	60.1
P	O2P	C1'	C2'	207.5	179.9
P	O2P	C1'	H1'1	332.8	300.1
P	O2P	C1'	H1'2	82.2	60.0
O3P	P	C1	H11	194.5	180.0
O3P	P	C1	H12	85.0	60.0
C1	P	O3P	O1P	116.3	120.0
C1	P	O3P	O2P	242.3	239.9
O1P	P	O3P	O2P	126.0	120.0
O3P	P	O2P	C1'	273.7	59.9
C1'	O2P	P	O3P	273.7	59.9
C2'	C1'	O2P	H1'1	234.7	239.9
C2'	C1'	O2P	H1'2	125.3	119.9
O2P	C1'	C2'	H2'1	180.0	179.9
O2P	C1'	C2'	H2'2	305.3	300.1
O2P	C1'	C2'	H2'3	54.7	60.1
H1'1	C1'	O2P	H1'2	250.6	240.0
O2P	C1'	C2'	H1'1	125.3	120.1
O2P	C1'	C2'	H1'2	234.7	240.1
H1'1	C1'	C2'	H1'2	109.5	119.9
H2'1	C2'	C1'	H2'2	234.7	239.9
H2'1	C2'	C1'	H2'3	125.3	119.9
H2'2	C2'	C1'	H2'3	250.6	240.0
O2P	C1'	H1'1	C2'	236.1	239.9
O2P	C1'	H1'1	H1'2	118.0	120.0
C2'	C1'	H1'1	H1'2	241.9	240.1
H1'1	C1'	C2'	H2'1	54.7	59.8
H1'1	C1'	C2'	H2'2	180.0	180.0
H1'1	C1'	C2'	H2'3	289.4	299.9
O2P	C1'	H1'2	C2'	123.9	120.0
O2P	C1'	H1'2	H1'1	242.0	240.0
C2'	C1'	H1'2	H1'1	118.1	120.0
H1'2	C1'	C2'	H2'1	305.3	299.9
H1'2	C1'	C2'	H2'2	70.5	60.0
H1'2	C1'	C2'	H2'3	180.0	180.0
H2'1	C2'	C1'	H1'1	54.7	59.8
H2'1	C2'	C1'	H1'2	305.3	299.9
C1'	C2'	H2'1	H2'2	125.2	120.2
C1'	C2'	H2'1	H2'3	234.8	240.1
H2'2	C2'	H2'1	H2'3	109.6	119.9
H2'2	C2'	C1'	H1'1	180.0	180.0
H2'2	C2'	C1'	H1'2	70.5	60.0
C1'	C2'	H2'2	H2'1	236.1	239.9
C1'	C2'	H2'2	H2'3	118.0	119.9
H2'1	C2'	H2'2	H2'3	241.9	240.1
H2'3	C2'	C1'	H1'1	289.4	299.9
H2'3	C2'	C1'	H1'2	180.0	180.0
C1'	C2'	H2'3	H2'1	123.9	120.0
C1'	C2'	H2'3	H2'2	242.0	240.0
H2'1	C2'	H2'3	H2'2	118.1	120.0