PDB Chemical Component HE0
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HE0
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5 |
S1 |
1.812 |
1.842 |
| S1 |
C2 |
1.837 |
1.836 |
| C3 |
C2 |
1.556 |
1.540 |
| C25 |
C2 |
1.509 |
1.530 |
| C2 |
C24 |
1.554 |
1.530 |
| N4 |
C3 |
1.434 |
1.466 |
| C3 |
C26 |
1.616 |
1.508 |
| C3 |
H3 |
1.100 |
1.090 |
| N4 |
C5 |
1.439 |
1.490 |
| N4 |
HN4 |
1.000 |
1.009 |
| C6 |
C5 |
1.543 |
1.530 |
| C5 |
H5 |
1.100 |
1.090 |
| C7 |
C6 |
1.490 |
1.507 |
| N8 |
C6 |
1.444 |
1.465 |
| C6 |
H6 |
1.100 |
1.090 |
| O29 |
C7 |
1.184 |
1.208 |
| C7 |
H7 |
1.080 |
1.080 |
| N8 |
C9 |
1.353 |
1.349 |
| N8 |
HN8 |
1.000 |
0.970 |
| C11 |
C9 |
1.493 |
1.507 |
| C9 |
O10 |
1.210 |
1.213 |
| C12 |
C11 |
1.512 |
1.531 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.089 |
| C13 |
C12 |
1.514 |
1.530 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.089 |
| C14 |
C13 |
1.543 |
1.530 |
| C13 |
H13 |
1.101 |
1.090 |
| C13 |
H13A |
1.100 |
1.090 |
| C15 |
C14 |
1.536 |
1.530 |
| C14 |
H14 |
1.101 |
1.089 |
| C14 |
H14A |
1.100 |
1.090 |
| C16 |
C15 |
1.510 |
1.506 |
| C15 |
N19 |
1.450 |
1.465 |
| C15 |
H15 |
1.100 |
1.090 |
| O17 |
C16 |
1.211 |
1.209 |
| C16 |
O18 |
1.329 |
1.342 |
| O18 |
HO18 |
0.950 |
0.967 |
| N19 |
C20 |
1.345 |
1.348 |
| N19 |
HN19 |
1.000 |
0.970 |
| O21 |
C20 |
1.210 |
1.214 |
| C20 |
C22 |
1.490 |
1.508 |
| C22 |
N23 |
1.478 |
1.469 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.090 |
| N23 |
HN23 |
1.000 |
1.009 |
| N23 |
HN2A |
1.000 |
1.009 |
| C24 |
H24 |
1.101 |
1.090 |
| C24 |
H24A |
1.100 |
1.089 |
| C24 |
H24B |
1.100 |
1.091 |
| C25 |
H25 |
1.099 |
1.090 |
| C25 |
H25A |
1.101 |
1.090 |
| C25 |
H25B |
1.100 |
1.090 |
| C26 |
O28 |
1.219 |
1.208 |
| C26 |
O27 |
1.263 |
1.341 |
| O27 |
HO27 |
0.950 |
0.968 |
Bond Angles for HE0
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S1 |
C2 |
C24 |
109.5 |
110.6 |
| C3 |
C2 |
C24 |
101.8 |
110.6 |
| C2 |
C24 |
H24 |
109.5 |
109.5 |
| C2 |
C24 |
H24A |
109.5 |
109.5 |
| C2 |
C24 |
H24B |
109.5 |
109.4 |
| N4 |
C3 |
C26 |
106.7 |
108.8 |
| N4 |
C3 |
H3 |
106.9 |
108.7 |
| C26 |
C3 |
H3 |
104.9 |
108.7 |
| C3 |
C26 |
O28 |
111.8 |
120.0 |
| C3 |
C26 |
O27 |
117.4 |
120.0 |
| C5 |
N4 |
HN4 |
105.8 |
111.0 |
| N4 |
C5 |
H5 |
110.6 |
111.1 |
| C6 |
C5 |
H5 |
109.1 |
111.1 |
| C7 |
C6 |
H6 |
109.2 |
109.5 |
| N8 |
C6 |
H6 |
109.9 |
109.5 |
| O29 |
C7 |
H7 |
115.6 |
120.0 |
| C9 |
N8 |
HN8 |
120.6 |
119.9 |
| N8 |
C9 |
O10 |
123.1 |
120.0 |
| C12 |
C11 |
H11 |
108.0 |
109.5 |
| C12 |
C11 |
H11A |
108.0 |
109.5 |
| H11 |
C11 |
H11A |
109.4 |
109.5 |
| C13 |
C12 |
H12 |
108.6 |
109.5 |
| C13 |
C12 |
H12A |
108.6 |
109.5 |
| H12 |
C12 |
H12A |
109.5 |
109.5 |
| C14 |
C13 |
H13 |
109.1 |
109.5 |
| C14 |
C13 |
H13A |
109.1 |
109.4 |
| H13 |
C13 |
H13A |
109.5 |
109.5 |
| C15 |
C14 |
H14 |
108.6 |
109.4 |
| C15 |
C14 |
H14A |
108.5 |
109.5 |
| H14 |
C14 |
H14A |
109.5 |
109.5 |
| C16 |
C15 |
N19 |
114.7 |
109.5 |
| C16 |
C15 |
H15 |
107.6 |
109.5 |
| N19 |
C15 |
H15 |
108.4 |
109.5 |
| C15 |
N19 |
C20 |
122.8 |
120.0 |
| C15 |
N19 |
HN19 |
118.6 |
120.1 |
| O17 |
C16 |
O18 |
125.4 |
120.0 |
| C16 |
O18 |
HO18 |
109.5 |
117.0 |
| C20 |
N19 |
HN19 |
118.6 |
120.0 |
| N19 |
C20 |
C22 |
113.9 |
120.0 |
| O21 |
C20 |
C22 |
120.8 |
119.9 |
| C20 |
C22 |
N23 |
110.4 |
109.5 |
| C20 |
C22 |
H22 |
109.2 |
109.4 |
| C20 |
C22 |
H22A |
109.2 |
109.4 |
| N23 |
C22 |
H22 |
109.3 |
109.5 |
| N23 |
C22 |
H22A |
109.3 |
109.5 |
| C22 |
N23 |
HN23 |
109.5 |
111.0 |
| C22 |
N23 |
HN2A |
109.5 |
111.0 |
| H22 |
C22 |
H22A |
109.4 |
109.5 |
| HN23 |
N23 |
HN2A |
109.5 |
111.0 |
| H24 |
C24 |
H24A |
109.5 |
109.5 |
| H24 |
C24 |
H24B |
109.5 |
109.4 |
| H24A |
C24 |
H24B |
109.4 |
109.4 |
| H25 |
C25 |
H25A |
109.5 |
109.4 |
| H25 |
C25 |
H25B |
109.5 |
109.5 |
| H25A |
C25 |
H25B |
109.4 |
109.5 |
| O27 |
C26 |
O28 |
124.2 |
120.0 |
| C26 |
O27 |
HO27 |
109.5 |
117.0 |
Torsion Angles for HE0
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
S1 |
C2 |
C24 |
97.8 |
100.2 |
| C3 |
C2 |
S1 |
C24 |
249.2 |
241.5 |
| S1 |
C2 |
C24 |
H24 |
180.0 |
61.4 |
| S1 |
C2 |
C24 |
H24A |
300.0 |
181.5 |
| S1 |
C2 |
C24 |
H24B |
60.0 |
301.5 |
| S1 |
C2 |
C3 |
C24 |
115.8 |
118.5 |
| C3 |
C2 |
C24 |
H24 |
295.9 |
175.5 |
| C3 |
C2 |
C24 |
H24A |
55.9 |
295.6 |
| C3 |
C2 |
C24 |
H24B |
175.9 |
55.5 |
| C25 |
C2 |
C24 |
H24 |
58.0 |
298.5 |
| C25 |
C2 |
C24 |
H24A |
178.0 |
58.6 |
| C25 |
C2 |
C24 |
H24B |
298.0 |
178.6 |
| H24 |
C24 |
C2 |
H24A |
240.0 |
239.9 |
| H24 |
C24 |
C2 |
H24B |
120.0 |
119.9 |
| H24A |
C24 |
C2 |
H24B |
240.0 |
240.0 |
| N4 |
C3 |
C2 |
C24 |
265.2 |
237.6 |
| C26 |
C3 |
N4 |
H3 |
111.8 |
118.2 |
| N4 |
C3 |
C26 |
O28 |
184.3 |
23.4 |
| N4 |
C3 |
C26 |
O27 |
31.5 |
203.4 |
| C26 |
C3 |
C2 |
C24 |
29.2 |
358.5 |
| N4 |
C3 |
C26 |
H3 |
246.8 |
241.8 |
| O27 |
C26 |
C3 |
O28 |
207.2 |
180.0 |
| C3 |
C26 |
O27 |
HO27 |
149.2 |
180.1 |
| H3 |
C3 |
C2 |
C24 |
153.3 |
116.8 |
| N4 |
C3 |
H3 |
C26 |
113.1 |
118.3 |
| H3 |
C3 |
C26 |
O28 |
297.5 |
141.6 |
| H3 |
C3 |
C26 |
O27 |
144.6 |
321.6 |
| C5 |
N4 |
C3 |
C26 |
198.3 |
271.0 |
| C5 |
N4 |
C3 |
H3 |
86.4 |
152.7 |
| C6 |
C5 |
N4 |
H5 |
119.8 |
124.2 |
| HN4 |
N4 |
C3 |
C26 |
320.2 |
34.9 |
| HN4 |
N4 |
C3 |
H3 |
208.4 |
276.6 |
| HN4 |
N4 |
C5 |
H5 |
7.3 |
311.5 |
| C6 |
C5 |
N4 |
HN4 |
127.1 |
75.7 |
| N4 |
C5 |
C6 |
H5 |
239.3 |
235.8 |
| H5 |
C5 |
N4 |
HN4 |
7.3 |
311.5 |
| C7 |
C6 |
C5 |
H5 |
103.6 |
184.2 |
| N8 |
C6 |
C7 |
H6 |
118.5 |
120.0 |
| N8 |
C6 |
C5 |
H5 |
221.7 |
304.2 |
| C7 |
C6 |
N8 |
H6 |
241.9 |
240.0 |
| H6 |
C6 |
C5 |
H5 |
346.6 |
64.2 |
| O29 |
C7 |
C6 |
H6 |
221.4 |
240.0 |
| H7 |
C7 |
C6 |
H6 |
41.4 |
60.0 |
| C9 |
N8 |
C6 |
H6 |
314.8 |
35.0 |
| HN8 |
N8 |
C6 |
H6 |
134.8 |
214.9 |
| HN8 |
N8 |
C9 |
O10 |
183.2 |
180.1 |
| C11 |
C9 |
N8 |
HN8 |
10.9 |
0.1 |
| O10 |
C9 |
N8 |
HN8 |
183.2 |
180.1 |
| H11 |
C11 |
C12 |
H11A |
118.2 |
120.1 |
| C12 |
C11 |
H11 |
H11A |
242.7 |
240.0 |
| C12 |
C11 |
H11A |
H11 |
117.3 |
120.0 |
| C13 |
C12 |
C11 |
H11 |
76.7 |
60.1 |
| C13 |
C12 |
C11 |
H11A |
318.5 |
300.0 |
| H12 |
C12 |
C13 |
H12A |
119.0 |
120.1 |
| H12 |
C12 |
C11 |
H11 |
197.2 |
180.0 |
| H12 |
C12 |
C11 |
H11A |
78.9 |
60.0 |
| C13 |
C12 |
H12 |
H12A |
241.5 |
239.9 |
| H12A |
C12 |
C11 |
H11 |
316.2 |
300.1 |
| H12A |
C12 |
C11 |
H11A |
198.0 |
180.0 |
| C13 |
C12 |
H12A |
H12 |
118.5 |
120.1 |
| C14 |
C13 |
C12 |
H12 |
186.3 |
60.0 |
| C14 |
C13 |
C12 |
H12A |
67.3 |
300.0 |
| H13 |
C13 |
C14 |
H13A |
119.6 |
120.0 |
| H13 |
C13 |
C12 |
H12 |
306.5 |
180.0 |
| H13 |
C13 |
C12 |
H12A |
187.5 |
60.0 |
| C14 |
C13 |
H13 |
H13A |
240.7 |
240.0 |
| H13A |
C13 |
C12 |
H12 |
66.1 |
300.1 |
| H13A |
C13 |
C12 |
H12A |
307.0 |
180.0 |
| C14 |
C13 |
H13A |
H13 |
119.3 |
120.0 |
| C15 |
C14 |
C13 |
H13 |
63.5 |
60.0 |
| C15 |
C14 |
C13 |
H13A |
303.9 |
300.0 |
| H14 |
C14 |
C15 |
H14A |
118.9 |
120.0 |
| H14 |
C14 |
C13 |
H13 |
184.1 |
180.0 |
| H14 |
C14 |
C13 |
H13A |
64.5 |
60.0 |
| C15 |
C14 |
H14 |
H14A |
241.7 |
240.0 |
| H14A |
C14 |
C13 |
H13 |
303.0 |
300.0 |
| H14A |
C14 |
C13 |
H13A |
183.4 |
180.0 |
| C15 |
C14 |
H14A |
H14 |
118.3 |
120.0 |
| C16 |
C15 |
C14 |
H14 |
53.7 |
55.0 |
| C16 |
C15 |
C14 |
H14A |
294.8 |
295.0 |
| N19 |
C15 |
C16 |
H15 |
120.7 |
120.0 |
| C16 |
C15 |
N19 |
C20 |
249.1 |
275.0 |
| C16 |
C15 |
N19 |
HN19 |
69.1 |
95.0 |
| N19 |
C15 |
C14 |
H14 |
180.0 |
175.0 |
| N19 |
C15 |
C14 |
H14A |
61.1 |
55.0 |
| C16 |
C15 |
N19 |
H15 |
239.8 |
240.0 |
| C20 |
N19 |
C15 |
HN19 |
180.0 |
180.0 |
| C15 |
N19 |
C20 |
C22 |
178.7 |
180.0 |
| H15 |
C15 |
C14 |
H14 |
297.8 |
294.9 |
| H15 |
C15 |
C14 |
H14A |
178.9 |
175.0 |
| C16 |
C15 |
H15 |
N19 |
124.6 |
120.0 |
| H15 |
C15 |
N19 |
C20 |
9.3 |
35.0 |
| H15 |
C15 |
N19 |
HN19 |
189.3 |
215.0 |
| O17 |
C16 |
C15 |
N19 |
156.4 |
360.0 |
| O17 |
C16 |
C15 |
H15 |
35.8 |
240.0 |
| O17 |
C16 |
O18 |
HO18 |
0.0 |
0.1 |
| O18 |
C16 |
C15 |
N19 |
331.3 |
180.1 |
| O18 |
C16 |
C15 |
H15 |
210.6 |
60.1 |
| C20 |
N19 |
C15 |
H15 |
9.3 |
35.0 |
| C15 |
N19 |
C20 |
HN19 |
180.0 |
180.0 |
| O21 |
C20 |
N19 |
C22 |
181.3 |
180.0 |
| N19 |
C20 |
C22 |
N23 |
192.1 |
180.0 |
| N19 |
C20 |
C22 |
H22 |
312.2 |
300.1 |
| N19 |
C20 |
C22 |
H22A |
71.9 |
60.0 |
| HN19 |
N19 |
C15 |
H15 |
189.3 |
215.0 |
| C15 |
N19 |
HN19 |
C20 |
180.0 |
180.0 |
| HN19 |
N19 |
C20 |
C22 |
358.8 |
360.0 |
| O21 |
C20 |
N19 |
HN19 |
180.0 |
180.0 |
| N19 |
C20 |
O21 |
C22 |
178.7 |
180.0 |
| O21 |
C20 |
C22 |
N23 |
10.9 |
360.0 |
| O21 |
C20 |
C22 |
H22 |
131.0 |
120.1 |
| O21 |
C20 |
C22 |
H22A |
250.7 |
240.0 |
| C22 |
C20 |
N19 |
HN19 |
358.8 |
360.0 |
| N23 |
C22 |
C20 |
H22 |
239.8 |
239.9 |
| N23 |
C22 |
C20 |
H22A |
120.2 |
120.0 |
| C20 |
C22 |
N23 |
HN23 |
180.0 |
56.1 |
| C20 |
C22 |
N23 |
HN2A |
300.0 |
180.0 |
| H22 |
C22 |
C20 |
H22A |
240.3 |
240.1 |
| C20 |
C22 |
N23 |
H22 |
120.2 |
120.0 |
| C20 |
C22 |
N23 |
H22A |
239.9 |
240.0 |
| H22 |
C22 |
N23 |
H22A |
119.7 |
120.0 |
| HN23 |
N23 |
C22 |
HN2A |
240.0 |
236.1 |
| C20 |
C22 |
H22 |
N23 |
239.1 |
239.9 |
| C20 |
C22 |
H22 |
H22A |
119.5 |
119.9 |
| N23 |
C22 |
H22 |
H22A |
240.4 |
240.0 |
| H22 |
C22 |
N23 |
HN23 |
59.8 |
296.0 |
| H22 |
C22 |
N23 |
HN2A |
179.9 |
60.0 |
| C20 |
C22 |
H22A |
N23 |
120.9 |
120.0 |
| C20 |
C22 |
H22A |
H22 |
240.5 |
240.1 |
| N23 |
C22 |
H22A |
H22 |
119.6 |
120.1 |
| H22A |
C22 |
N23 |
HN23 |
300.1 |
176.0 |
| H22A |
C22 |
N23 |
HN2A |
60.2 |
299.9 |
| HN23 |
N23 |
C22 |
H22 |
59.8 |
296.0 |
| HN23 |
N23 |
C22 |
H22A |
300.1 |
176.0 |
| C22 |
N23 |
HN23 |
HN2A |
120.1 |
123.9 |
| HN2A |
N23 |
C22 |
H22 |
179.9 |
60.0 |
| HN2A |
N23 |
C22 |
H22A |
60.2 |
299.9 |
| C22 |
N23 |
HN2A |
HN23 |
239.9 |
236.1 |
| C2 |
C24 |
H24 |
H24A |
120.0 |
120.1 |
| C2 |
C24 |
H24 |
H24B |
240.0 |
240.0 |
| H24A |
C24 |
H24 |
H24B |
119.9 |
119.9 |
| C2 |
C24 |
H24A |
H24 |
240.0 |
239.9 |
| C2 |
C24 |
H24A |
H24B |
120.0 |
120.0 |
| H24 |
C24 |
H24A |
H24B |
240.0 |
240.1 |
| C2 |
C24 |
H24B |
H24 |
120.0 |
120.0 |
| C2 |
C24 |
H24B |
H24A |
240.0 |
240.0 |
| H24 |
C24 |
H24B |
H24A |
119.9 |
120.0 |
| H25A |
C25 |
H25 |
H25B |
120.0 |
120.0 |
| H25 |
C25 |
H25A |
H25B |
240.0 |
239.9 |
| H25 |
C25 |
H25B |
H25A |
120.0 |
120.0 |
| O28 |
C26 |
C3 |
H3 |
297.5 |
141.6 |
| C3 |
C26 |
O28 |
O27 |
209.4 |
180.0 |
| O28 |
C26 |
O27 |
HO27 |
0.0 |
0.1 |
| O27 |
C26 |
C3 |
H3 |
144.6 |
321.6 |
| C3 |
C26 |
O27 |
O28 |
149.2 |
180.0 |
| HO27 |
O27 |
C26 |
O28 |
0.0 |
0.1 |