PDB Chemical Component HDY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HDY

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C10	C9	1.499	1.507
C10	H101	1.100	1.089
C10	H102	1.100	1.090
C10	H103	1.100	1.089
C9	N8	1.335	1.327
C9	C7	1.497	1.380
N8	C5	1.368	1.329
C5	C4	1.380	1.408
C5	N6	1.397	1.369
C4	C3	1.394	1.361
C4	H4	1.062	1.079
C3	C2	1.405	1.403
C3	H3	1.061	1.080
C2	C1	1.401	1.351
C2	H2	1.061	1.080
N6	C1	1.344	1.363
N6	C7	1.444	1.377
C1	H1	1.061	1.080
C7	C11	1.469	1.472
C11	C12	1.391	1.401
C11	N16	1.352	1.335
C12	C13	1.391	1.381
C12	H12	1.062	1.081
C13	N14	1.342	1.325
C13	H13	1.062	1.080
N14	C15	1.364	1.325
N16	C15	1.340	1.324
C15	N17	1.357	1.384
N17	C18	1.363	1.399
N17	H17	0.994	0.970
C18	C19	1.393	1.389
C18	C23	1.405	1.388
C19	C20	1.398	1.381
C19	H19	1.061	1.080
C20	C21	1.395	1.387
C20	H20	1.061	1.080
C23	C22	1.408	1.382
C23	H23	1.062	1.078
C22	C21	1.402	1.387
C22	H22	1.062	1.079
C21	O24	1.399	1.360
O24	C25	1.444	1.430
C25	C26	1.546	1.530
C25	H251	1.100	1.090
C25	H252	1.100	1.089
C26	O31	1.428	1.428
C26	C27	1.543	1.530
C26	H26	1.100	1.090
O31	H31	0.990	0.967
C27	N28	1.473	1.469
C27	H271	1.100	1.090
C27	H272	1.100	1.090
N28	C30	1.458	1.469
N28	C29	1.460	1.468
C30	H301	1.100	1.090
C30	H302	1.100	1.090
C30	H303	1.100	1.089
C29	H291	1.100	1.090
C29	H292	1.100	1.090
C29	H293	1.100	1.091

Bond Angles for HDY

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C9	C10	H101	109.5	109.5
C9	C10	H102	109.5	109.5
C9	C10	H103	109.4	109.5
C10	C9	N8	124.0	125.9
C10	C9	C7	127.0	125.8
H101	C10	H102	109.4	109.5
H101	C10	H103	109.4	109.5
H102	C10	H103	109.5	109.5
N8	C9	C7	108.9	108.3
C9	N8	C5	108.3	109.7
C9	C7	N6	104.9	106.6
C9	C7	C11	129.7	126.7
N8	C5	C4	127.1	132.0
N8	C5	N6	113.0	108.4
C4	C5	N6	119.9	119.6
C5	C4	C3	117.5	119.4
C5	C4	H4	121.2	120.3
C5	N6	C1	124.1	120.5
C5	N6	C7	104.9	107.0
C3	C4	H4	121.3	120.4
C4	C3	C2	121.2	119.7
C4	C3	H3	119.4	120.1
C2	C3	H3	119.4	120.2
C3	C2	C1	120.4	120.2
C3	C2	H2	119.8	119.9
C1	C2	H2	119.8	119.9
C2	C1	N6	116.9	120.6
C2	C1	H1	121.6	119.7
C1	N6	C7	131.0	132.4
N6	C1	H1	121.5	119.7
N6	C7	C11	125.4	126.8
C7	C11	C12	122.8	120.6
C7	C11	N16	116.0	120.6
C12	C11	N16	121.2	118.8
C11	C12	C13	117.6	118.5
C11	C12	H12	121.2	120.8
C11	N16	C15	120.5	120.6
C13	C12	H12	121.2	120.8
C12	C13	N14	119.1	119.3
C12	C13	H13	120.5	120.4
N14	C13	H13	120.5	120.3
C13	N14	C15	122.6	121.1
N14	C15	N16	119.0	121.7
N14	C15	N17	119.5	119.1
N16	C15	N17	121.5	119.2
C15	N17	C18	130.3	120.0
C15	N17	H17	114.9	120.0
C18	N17	H17	114.9	120.0
N17	C18	C19	116.4	120.0
N17	C18	C23	125.4	120.0
C19	C18	C23	118.3	120.0
C18	C19	C20	121.6	120.0
C18	C19	H19	119.2	120.0
C18	C23	C22	120.0	119.9
C18	C23	H23	120.0	120.0
C20	C19	H19	119.2	120.0
C19	C20	C21	120.8	120.0
C19	C20	H20	119.6	120.0
C21	C20	H20	119.6	120.0
C20	C21	C22	117.9	120.1
C20	C21	O24	121.6	120.0
C22	C23	H23	120.0	120.1
C23	C22	C21	121.5	120.0
C23	C22	H22	119.3	120.0
C21	C22	H22	119.2	120.0
C22	C21	O24	120.4	120.0
C21	O24	C25	130.6	106.8
O24	C25	C26	110.6	109.4
O24	C25	H251	109.2	109.4
O24	C25	H252	108.8	109.4
C26	C25	H251	109.2	109.5
C26	C25	H252	108.8	109.6
C25	C26	O31	109.5	109.5
C25	C26	C27	114.4	109.4
C25	C26	H26	105.5	109.5
H251	C25	H252	110.3	109.5
O31	C26	C27	107.9	109.4
O31	C26	H26	112.3	109.5
C26	O31	H31	109.5	106.8
C27	C26	H26	107.2	109.5
C26	C27	N28	116.2	109.4
C26	C27	H271	107.8	109.4
C26	C27	H272	105.5	109.5
N28	C27	H271	107.8	109.5
N28	C27	H272	105.6	109.6
C27	N28	C30	109.6	106.7
C27	N28	C29	110.7	106.8
H271	C27	H272	114.3	109.4
C30	N28	C29	104.8	106.7
N28	C30	H301	109.5	109.5
N28	C30	H302	109.5	109.5
N28	C30	H303	109.5	109.5
N28	C29	H291	109.5	109.5
N28	C29	H292	109.5	109.5
N28	C29	H293	109.4	109.4
H301	C30	H302	109.5	109.5
H301	C30	H303	109.5	109.5
H302	C30	H303	109.5	109.5
H291	C29	H292	109.5	109.5
H291	C29	H293	109.5	109.5
H292	C29	H293	109.5	109.4

Torsion Angles for HDY

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H101	C10	C9	H102	240.0	240.0
H101	C10	C9	H103	120.0	120.0
H102	C10	C9	H103	240.0	240.0
N8	C9	C10	C7	180.5	180.5
C10	C9	N8	C5	180.9	180.0
C10	C9	C7	N6	179.3	180.0
C10	C9	C7	C11	2.5	0.3
C9	C10	H101	H102	120.0	120.0
C9	C10	H101	H103	240.0	240.0
H101	C10	C9	N8	315.3	90.0
H101	C10	C9	C7	134.7	269.5
H102	C10	H101	H103	120.0	120.0
C9	C10	H102	H101	240.0	240.0
C9	C10	H102	H103	120.0	120.0
H102	C10	C9	N8	75.3	210.0
H102	C10	C9	C7	254.7	29.5
H101	C10	H102	H103	240.0	239.9
C9	C10	H103	H101	120.0	120.0
C9	C10	H103	H102	240.0	240.0
H103	C10	C9	N8	195.3	330.0
H103	C10	C9	C7	14.8	149.5
H101	C10	H103	H102	120.0	120.0
N8	C9	C10	H101	315.3	90.0
N8	C9	C10	H102	75.3	210.0
N8	C9	C10	H103	195.3	330.0
C10	C9	N8	C7	179.5	179.6
N8	C9	C7	N6	358.8	359.6
N8	C9	C7	C11	182.0	179.9
C9	N8	C5	C4	181.1	179.7
C9	N8	C5	N6	358.9	359.7
C7	C9	C10	H101	134.7	269.5
C7	C9	C10	H102	254.7	29.5
C7	C9	C10	H103	14.8	149.5
C10	C9	C7	N8	180.5	180.4
C7	C9	N8	C5	1.4	0.4
C5	N6	C7	C9	0.5	0.3
C1	N6	C7	C9	178.7	180.3
N6	C7	C9	C11	176.8	179.7
C9	C7	C11	C12	344.1	139.6
C9	C7	C11	N16	160.6	319.9
C5	N8	C9	C7	1.4	0.4
C4	C5	N8	N6	182.2	180.0
N8	C5	C4	C3	178.4	180.0
N8	C5	C4	H4	358.4	0.1
N8	C5	N6	C1	181.9	180.0
N8	C5	N6	C7	0.4	360.0
N8	C5	C4	N6	177.6	180.1
C4	C5	N6	C1	359.9	0.0
C4	C5	N6	C7	178.3	180.0
C3	C4	C5	H4	180.0	179.9
C5	C4	C3	C2	359.5	0.1
C5	C4	C3	H3	179.5	180.0
C9	C7	N6	C5	0.5	0.3
N8	C5	N6	C4	182.0	180.0
N6	C5	C4	C3	0.8	359.9
N6	C5	C4	H4	180.8	180.0
C2	C1	N6	C5	359.1	0.0
C1	N6	C5	C7	181.6	180.0
C5	N6	C1	H1	179.2	180.0
C5	N6	C7	C11	177.5	180.0
C3	C4	C5	N6	0.8	359.9
C5	C4	C3	H4	180.0	180.1
C2	C3	C4	H3	180.0	180.0
C4	C3	C2	C1	359.6	359.9
C4	C3	C2	H2	179.5	180.0
H4	C4	C5	N6	180.8	180.0
C5	C4	H4	C3	180.0	179.9
H4	C4	C3	C2	179.5	180.0
H4	C4	C3	H3	359.5	360.0
C2	C3	C4	H4	179.5	180.0
C4	C3	C2	H3	180.0	180.0
C1	C2	C3	H2	180.0	180.0
C3	C2	C1	N6	1.1	360.0
C3	C2	C1	H1	181.1	180.0
H3	C3	C4	H4	359.5	360.0
C4	C3	H3	C2	180.0	180.0
H3	C3	C2	C1	179.5	180.0
H3	C3	C2	H2	359.5	0.0
C5	N6	C1	C2	359.1	0.0
C1	C2	C3	H3	179.5	180.0
C3	C2	C1	H2	180.0	180.0
C2	C1	N6	C7	181.1	180.0
N6	C1	C2	H1	180.0	180.0
H2	C2	C3	H3	359.5	0.0
C3	C2	H2	C1	180.0	180.0
H2	C2	C1	N6	181.1	180.0
H2	C2	C1	H1	1.1	360.0
C9	C7	N6	C1	178.7	180.3
C5	N6	C1	C7	178.0	180.0
N6	C1	C2	H2	181.1	180.0
C2	C1	N6	H1	180.0	180.0
C1	N6	C7	C11	355.7	360.0
C9	C7	N6	C11	183.0	180.3
C5	N6	C7	C1	181.7	180.0
C7	N6	C1	H1	1.2	360.0
N6	C7	C11	C12	167.9	320.0
N6	C7	C11	N16	344.3	140.3
H1	C1	C2	H2	1.1	360.0
C2	C1	H1	N6	180.0	180.0
H1	C1	N6	C7	1.2	360.0
C9	C7	C11	N6	176.2	179.6
C12	C11	C7	N16	183.5	179.8
C7	C11	C12	C13	177.8	180.0
C7	C11	C12	H12	357.8	0.0
C7	C11	N16	C15	180.9	180.3
C7	C11	C12	N16	176.3	180.2
C12	C11	N16	C15	357.4	0.6
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	N14	0.3	360.0
C11	C12	C13	H13	180.2	180.0
C7	C11	N16	C12	183.5	179.8
N16	C11	C12	C13	1.5	359.7
N16	C11	C12	H12	181.5	179.8
N14	C15	N16	C11	1.9	359.4
C11	N16	C15	N17	181.6	179.7
C13	C12	C11	N16	1.5	359.7
C11	C12	C13	H12	180.0	180.0
N14	C13	C12	H13	180.0	179.9
C12	C13	N14	C15	359.1	0.0
H12	C12	C11	N16	181.5	179.8
C11	C12	H12	C13	180.0	179.9
H12	C12	C13	N14	180.2	179.9
H12	C12	C13	H13	0.2	360.0
N14	C13	C12	H12	180.2	179.9
C12	C13	N14	H13	180.0	180.1
C13	N14	C15	N16	359.9	0.3
C13	N14	C15	N17	180.2	179.9
H13	C13	C12	H12	0.2	360.0
C12	C13	H13	N14	180.0	179.9
H13	C13	N14	C15	179.1	179.9
C11	N16	C15	N14	1.9	359.4
C15	N14	C13	H13	179.1	179.9
N16	C15	N14	N17	179.7	180.4
N14	C15	N17	C18	186.3	5.6
N14	C15	N17	H17	6.3	185.6
N14	C15	N16	N17	180.3	179.6
N16	C15	N17	C18	6.6	185.2
N16	C15	N17	H17	186.6	5.2
N14	C15	N17	N16	179.7	180.4
C18	N17	C15	H17	180.0	180.0
C15	N17	C18	C19	140.2	213.6
C15	N17	C18	C23	318.5	33.7
C15	N17	C18	H17	180.0	180.0
C19	C18	N17	C23	181.7	179.9
N17	C18	C19	C20	178.9	180.1
N17	C18	C19	H19	358.9	0.1
N17	C18	C23	C22	181.3	179.7
N17	C18	C23	H23	1.2	359.9
C15	N17	H17	C18	180.0	180.0
H17	N17	C18	C19	320.2	33.6
H17	N17	C18	C23	138.5	213.7
C19	C18	N17	H17	320.2	33.6
N17	C18	C19	C23	178.5	180.1
C19	C18	C23	C22	359.6	359.8
C19	C18	C23	H23	179.6	180.0
C20	C19	C18	H19	180.0	179.9
C18	C19	C20	C21	0.6	360.0
C18	C19	C20	H20	180.6	180.1
C23	C18	N17	H17	138.5	213.7
N17	C18	C23	C19	181.7	179.9
C23	C18	C19	C20	0.5	360.0
C23	C18	C19	H19	180.5	180.0
C22	C23	C18	H23	180.0	179.8
C18	C23	C22	C21	359.3	0.5
C18	C23	C22	H22	179.3	180.0
C20	C19	C18	C23	0.5	360.0
C18	C19	C20	H19	180.0	180.1
C21	C20	C19	H20	180.0	179.9
C19	C20	C21	C22	358.4	0.3
C19	C20	C21	O24	181.5	180.1
H19	C19	C18	C23	180.5	180.0
C18	C19	H19	C20	180.0	179.9
H19	C19	C20	C21	180.6	179.9
H19	C19	C20	H20	0.6	0.0
C21	C20	C19	H19	180.6	179.9
C19	C20	C21	H20	180.0	180.1
C23	C22	C21	C20	1.7	359.4
C20	C21	C22	H22	181.7	180.0
C22	C21	C20	O24	176.9	180.2
C20	C21	O24	C25	291.0	180.0
H20	C20	C19	H19	0.6	0.0
C19	C20	H20	C21	180.0	179.9
H20	C20	C21	C22	178.4	180.2
H20	C20	C21	O24	1.5	360.0
C18	C23	C22	H23	180.0	180.2
C20	C21	C22	C23	1.7	359.4
C21	C22	C23	H22	180.0	180.5
C23	C22	C21	O24	178.6	179.7
C18	C23	H23	C22	180.0	179.8
H23	C23	C22	C21	179.4	180.3
H23	C23	C22	H22	359.4	359.7
C22	C21	C20	H20	178.4	180.2
C20	C21	C22	O24	183.1	179.8
C21	C22	C23	H23	179.4	180.3
C23	C22	C21	H22	180.0	179.5
C22	C21	O24	C25	114.2	359.8
H22	C22	C23	H23	359.4	359.7
C23	C22	H22	C21	180.0	180.5
H22	C22	C21	O24	358.6	0.2
O24	C21	C20	H20	1.5	360.0
C20	C21	O24	C22	176.8	180.2
O24	C21	C22	H22	358.6	0.2
C21	O24	C25	C26	152.5	179.9
C21	O24	C25	H251	272.6	60.0
C21	O24	C25	H252	33.0	300.0
C26	C25	O24	H251	239.8	120.0
C26	C25	O24	H252	119.5	240.0
O24	C25	C26	O31	356.2	60.0
O24	C25	C26	C27	117.5	180.0
O24	C25	C26	H26	235.0	300.0
H251	C25	O24	H252	239.6	120.0
O24	C25	C26	H251	120.2	240.1
O24	C25	C26	H252	240.5	119.9
H251	C25	C26	H252	120.4	239.9
O31	C26	C25	C27	238.7	240.1
O31	C26	C25	H26	121.1	120.0
C25	C26	O31	H31	150.8	59.9
C27	C26	C25	H26	242.4	240.0
C25	C26	C27	N28	73.4	180.0
C25	C26	C27	H271	194.3	60.0
C25	C26	C27	H272	316.8	300.1
O24	C25	H251	C26	239.0	119.9
O24	C25	H251	H252	119.5	240.1
C26	C25	H251	H252	240.5	120.2
H251	C25	C26	O31	236.0	180.0
H251	C25	C26	C27	357.3	299.9
H251	C25	C26	H26	114.9	59.9
O24	C25	H252	C26	120.6	240.1
O24	C25	H252	H251	240.3	119.9
C26	C25	H252	H251	119.7	239.9
H252	C25	C26	O31	115.6	300.1
H252	C25	C26	C27	236.9	60.0
H252	C25	C26	H26	354.5	180.0
O31	C26	C25	H251	236.0	180.0
O31	C26	C25	H252	115.6	300.1
C25	C26	O31	C27	125.2	119.9
C25	C26	O31	H26	243.1	239.9
C27	C26	O31	H26	117.9	120.0
O31	C26	C27	N28	195.6	299.9
O31	C26	C27	H271	316.5	180.0
O31	C26	C27	H272	79.0	60.0
C27	C26	C25	H251	357.3	299.9
C27	C26	C25	H252	236.9	60.0
C25	C26	C27	O31	237.8	240.0
C25	C26	C27	H26	116.6	120.1
O31	C26	C27	H26	238.8	240.0
C27	C26	O31	H31	25.7	299.9
N28	C27	C26	H271	239.0	119.9
N28	C27	C26	H272	116.5	239.9
C26	C27	N28	C30	108.6	180.0
C26	C27	N28	C29	223.7	293.9
H271	C27	C26	H272	237.5	120.0
H26	C26	C25	H251	114.9	59.9
H26	C26	C25	H252	354.5	180.0
C25	C26	H26	O31	119.3	120.1
C25	C26	H26	C27	237.7	240.0
O31	C26	H26	C27	118.4	119.9
H26	C26	O31	H31	267.7	180.0
H26	C26	C27	N28	316.8	59.9
H26	C26	C27	H271	77.8	300.0
H26	C26	C27	H272	200.3	180.0
H31	O31	C26	C27	25.7	299.9
H31	O31	C26	H26	267.7	180.0
N28	C27	C26	H26	316.8	59.9
C26	C27	N28	H271	121.0	240.1
C26	C27	N28	H272	243.5	120.0
H271	C27	N28	H272	122.5	240.0
C30	N28	C27	C29	244.9	246.2
C27	N28	C30	H301	177.6	180.1
C27	N28	C30	H302	297.6	300.0
C27	N28	C30	H303	57.6	60.0
C27	N28	C29	H291	235.2	66.2
C27	N28	C29	H292	355.2	186.3
C27	N28	C29	H293	115.2	306.2
H271	C27	C26	H26	77.8	300.0
C26	C27	H271	N28	233.9	119.9
C26	C27	H271	H272	116.9	240.0
N28	C27	H271	H272	243.0	120.1
H271	C27	N28	C30	347.6	300.0
H271	C27	N28	C29	102.7	53.8
H272	C27	C26	H26	200.3	180.0
C26	C27	H272	N28	123.5	240.0
C26	C27	H272	H271	241.8	119.9
N28	C27	H272	H271	118.3	240.0
H272	C27	N28	C30	225.1	60.0
H272	C27	N28	C29	340.2	173.8
C30	N28	C27	H271	347.6	300.0
C30	N28	C27	H272	225.1	60.0
C27	N28	C30	C29	118.8	113.8
C30	N28	C29	H291	353.2	180.0
C30	N28	C29	H292	113.2	300.0
C30	N28	C29	H293	233.2	60.0
H301	C30	N28	H302	240.0	240.0
H301	C30	N28	H303	120.0	120.1
H302	C30	N28	H303	240.0	240.0
C29	N28	C27	H271	102.7	53.8
C29	N28	C27	H272	340.2	173.8
C27	N28	C29	C30	241.9	246.2
C29	N28	C30	H301	58.8	66.2
C29	N28	C30	H302	178.8	186.2
C29	N28	C30	H303	298.8	306.2
H291	C29	N28	H292	240.0	239.9
H291	C29	N28	H293	120.0	120.0
H292	C29	N28	H293	240.0	240.1
H301	C30	N28	C29	58.8	66.2
N28	C30	H301	H302	120.0	120.0
N28	C30	H301	H303	240.0	240.0
H302	C30	H301	H303	120.0	120.0
H302	C30	N28	C29	178.8	186.2
N28	C30	H302	H301	240.0	240.0
N28	C30	H302	H303	120.0	120.0
H301	C30	H302	H303	240.0	240.0
H303	C30	N28	C29	298.8	306.2
N28	C30	H303	H301	120.0	120.0
N28	C30	H303	H302	240.0	240.0
H301	C30	H303	H302	120.0	120.0
N28	C29	H291	H292	120.0	120.1
N28	C29	H291	H293	240.0	240.0
H292	C29	H291	H293	120.0	120.0
N28	C29	H292	H291	240.0	239.9
N28	C29	H292	H293	120.0	119.9
H291	C29	H292	H293	240.0	240.0
N28	C29	H293	H291	120.0	120.0
N28	C29	H293	H292	240.0	240.0
H291	C29	H293	H292	120.0	120.0