PDB Chemical Component HDV

Ideal Model

Chemical Description

Name 9-{2-deoxy-2-fluoro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}-2-me thyl-9H-purin-6-amine
Synonyms Clofarabine-TRIPHOSPHATE
Formula C11 H17 F N5 O12 P3
Formal charge 0
Molecular weight 523.199 g/mol
Component type NON-POLYMER

Chemical features

Atom count 49
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Bond count 51
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 9-{2-deoxy-2-fluoro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}-2-methyl-9H-purin-6-amine
Systematic name (OpenEye OEToolkits) [[(2~{R},3~{R},4~{S},5~{R})-5-(6-azanyl-2-methyl-purin-9-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Cc1nc(N)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@@H]3F)c2n1
SMILES (CACTVS) Cc1nc(N)c2ncn([CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3F)c2n1
Stereo SMILES (OpenEye) Cc1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)F)N
InChI descriptor InChI=1S/C11H17FN5O12P3/c1-4-15-9(13)7-10(16-4)17(3-14-7)11-6(12)8(18)5(27-11)2-26-31(22,23)29-32(24,25)28-30(19,20)21/h3,5-6,8,11,18H,2H2,1H3,(H,22,23)(H,24,25)(H2,13,15,16)(H2,19,20,21)/t5-,6+,8-,11-/m1/s1
InChIKey descriptor BGNIGZFVXIGOQD-WCGPTHBMSA-N

Status Information

Last modified 2020-06-17
Created 2018-06-27
Release status REL
Model PDB code 6DWD
Processing site RCSB