PDB Chemical Component HDT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HDT

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C22	C17	1.399	1.389
C22	C21	1.394	1.381
C22	H22	1.062	1.080
N1	C2	1.340	1.362
N1	C6	1.318	1.368
N1	C9	1.351	1.378
C2	C3	1.391	1.351
C2	H2	1.061	1.080
C6	C5	1.383	1.407
C6	N7	1.400	1.329
C5	C4	1.396	1.361
C5	H5	1.062	1.080
C4	C3	1.400	1.404
C4	H4	1.062	1.080
C3	H3	1.061	1.080
C11	C10	1.385	1.402
C11	C12	1.388	1.380
C11	H11	1.062	1.080
C10	C9	1.496	1.472
C10	N15	1.360	1.335
C9	C8	1.350	1.379
C8	N7	1.276	1.327
C8	H8	1.062	1.080
C12	N13	1.340	1.325
C12	H12	1.062	1.080
C17	C18	1.393	1.388
C17	N16	1.408	1.397
C14	N15	1.352	1.323
C14	N16	1.364	1.385
C14	N13	1.350	1.325
C18	C19	1.397	1.381
C18	H18	1.062	1.081
C19	C20	1.390	1.382
C19	H19	1.061	1.080
C20	S23	1.605	1.762
C20	C21	1.395	1.383
O26	S23	1.432	1.421
S23	O25	1.440	1.420
S23	N24	1.601	1.656
N24	H241	1.030	0.969
N24	H242	1.030	0.970
C21	H21	1.062	1.080
N16	H16	0.994	0.970

Bond Angles for HDT

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C17	C22	C21	121.0	119.9
C17	C22	H22	119.5	120.0
C22	C17	C18	118.5	119.8
C22	C17	N16	118.6	120.1
C21	C22	H22	119.5	120.1
C22	C21	C20	120.0	120.1
C22	C21	H21	120.0	120.0
C2	N1	C6	124.8	120.5
C2	N1	C9	129.1	132.4
N1	C2	C3	117.5	120.6
N1	C2	H2	121.3	119.7
C6	N1	C9	106.1	107.0
N1	C6	C5	121.6	119.6
N1	C6	N7	108.8	108.4
N1	C9	C10	124.4	126.7
N1	C9	C8	108.8	106.5
C3	C2	H2	121.3	119.7
C2	C3	C4	118.5	120.2
C2	C3	H3	120.8	119.9
C5	C6	N7	129.6	132.0
C6	C5	C4	115.4	119.4
C6	C5	H5	122.3	120.3
C6	N7	C8	106.9	109.7
C4	C5	H5	122.3	120.3
C5	C4	C3	122.2	119.6
C5	C4	H4	118.9	120.2
C3	C4	H4	118.9	120.2
C4	C3	H3	120.7	119.9
C10	C11	C12	117.9	118.4
C10	C11	H11	121.0	120.7
C11	C10	C9	119.9	120.6
C11	C10	N15	120.0	118.8
C12	C11	H11	121.0	120.8
C11	C12	N13	119.9	119.4
C11	C12	H12	120.1	120.3
C9	C10	N15	120.1	120.6
C10	C9	C8	126.9	126.7
C10	N15	C14	121.1	120.6
C9	C8	N7	109.4	108.3
C9	C8	H8	125.3	125.8
N7	C8	H8	125.3	125.9
N13	C12	H12	120.0	120.3
C12	N13	C14	122.2	121.1
C18	C17	N16	122.6	120.1
C17	C18	C19	120.5	120.0
C17	C18	H18	119.7	120.0
C17	N16	C14	131.4	120.0
C17	N16	H16	114.3	120.0
N15	C14	N16	124.0	119.1
N15	C14	N13	118.8	121.7
N16	C14	N13	117.1	119.1
C14	N16	H16	114.3	120.0
C19	C18	H18	119.7	120.0
C18	C19	C20	120.6	120.1
C18	C19	H19	119.7	120.0
C20	C19	H19	119.7	119.9
C19	C20	S23	120.4	120.0
C19	C20	C21	119.3	120.1
S23	C20	C21	120.3	119.9
C20	S23	O26	107.3	105.8
C20	S23	O25	110.7	105.8
C20	S23	N24	110.8	107.4
C20	C21	H21	120.0	119.9
O26	S23	O25	109.4	125.4
O26	S23	N24	108.9	105.8
O25	S23	N24	109.7	105.7
S23	N24	H241	109.5	120.0
S23	N24	H242	109.5	120.0
H241	N24	H242	109.5	120.0

Torsion Angles for HDT

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C21	C22	C17	H22	180.0	179.9
C17	C22	C21	C20	358.6	0.4
C17	C22	C21	H21	178.6	180.0
C18	C17	C22	N16	186.4	180.0
C22	C17	C18	C19	357.0	360.0
C22	C17	C18	H18	176.9	180.0
C22	C17	N16	C14	172.3	213.7
C22	C17	N16	H16	352.3	33.7
C17	C22	C21	H22	180.0	180.1
C21	C22	C17	C18	3.2	359.8
C21	C22	C17	N16	176.8	179.8
C19	C20	C21	C22	359.5	359.5
S23	C20	C21	C22	181.1	179.8
C20	C21	C22	H21	180.0	180.5
C17	C22	H22	C21	180.0	179.9
H22	C22	C17	C18	183.2	179.9
H22	C22	C17	N16	356.8	359.9
H22	C22	C21	C20	178.6	180.4
H22	C22	C21	H21	358.5	359.9
C6	N1	C2	C9	180.5	180.9
C2	N1	C6	C5	359.7	359.4
C2	N1	C6	N7	180.1	179.7
C2	N1	C9	C10	0.6	0.7
C2	N1	C9	C8	180.0	180.5
C3	C2	N1	H2	180.0	180.3
N1	C2	C3	C4	0.2	359.6
N1	C2	C3	H3	180.2	179.7
C2	N1	C6	C9	179.6	179.3
C6	N1	C2	C3	0.1	0.6
C6	N1	C2	H2	180.2	180.3
C6	N1	C9	C10	180.1	179.9
C6	N1	C9	C8	359.5	359.6
C5	C6	N1	N7	179.6	179.7
N1	C6	C5	C4	0.1	0.3
N1	C6	C5	H5	180.2	180.3
N1	C6	N7	C8	359.6	359.7
C2	N1	C9	C6	180.5	180.8
C9	N1	C2	C3	179.6	179.7
C9	N1	C2	H2	359.6	359.4
C9	N1	C6	C5	180.1	180.1
C9	N1	C6	N7	0.6	0.5
C11	C10	C9	N1	152.2	320.0
N1	C9	C10	N15	333.0	140.4
C10	C9	N1	C8	180.6	180.2
N1	C9	C8	N7	0.2	0.2
N1	C9	C8	H8	180.2	180.2
C3	C2	N1	C6	0.1	0.6
C3	C2	N1	C9	179.6	179.7
N1	C2	C3	H2	180.0	179.7
C5	C4	C3	C2	359.7	0.1
C2	C3	C4	H4	179.7	180.1
C4	C3	C2	H3	180.0	179.9
H2	C2	N1	C6	180.2	180.3
H2	C2	N1	C9	359.6	359.4
N1	C2	H2	C3	180.0	180.3
H2	C2	C3	C4	180.1	179.9
H2	C2	C3	H3	0.1	0.1
C5	C6	N1	C9	180.1	180.1
N1	C6	C5	N7	180.5	180.4
C5	C6	N7	C8	180.0	180.0
C4	C5	C6	H5	180.0	180.0
C6	C5	C4	C3	0.2	360.0
C6	C5	C4	H4	180.2	180.0
N7	C6	N1	C9	0.6	0.5
N1	C6	N7	C5	179.5	179.6
N7	C6	C5	C4	179.6	179.9
N7	C6	C5	H5	359.6	359.9
C9	C8	N7	C6	0.1	0.1
C6	N7	C8	H8	180.1	180.1
C2	C3	C4	C5	359.7	0.1
C4	C5	C6	N7	179.6	179.9
C6	C5	C4	H5	180.0	180.0
C3	C4	C5	H4	180.0	180.0
C5	C4	C3	H3	179.7	179.9
H5	C5	C6	N7	359.6	359.9
C6	C5	H5	C4	180.0	180.0
H5	C5	C4	C3	180.1	180.0
H5	C5	C4	H4	0.1	360.0
C4	C3	C2	H2	180.1	179.9
C2	C3	C4	H3	180.0	180.1
C3	C4	C5	H5	180.1	180.0
C5	C4	C3	H4	180.0	180.0
H4	C4	C5	H5	0.1	360.0
C5	C4	H4	C3	180.0	180.0
H4	C4	C3	H3	359.7	360.0
H3	C3	C2	H2	0.1	0.1
C2	C3	H3	C4	180.0	179.9
H3	C3	C4	H4	359.7	360.0
N1	C9	C10	C11	152.2	320.0
C12	C11	C10	H11	180.0	179.9
C10	C11	C12	N13	0.7	0.1
C10	C11	C12	H12	180.7	180.0
C9	C10	C11	N15	180.8	180.4
C11	C10	C9	C8	332.9	140.2
C11	C10	N15	C14	1.2	0.7
C10	C11	C12	H11	180.0	180.1
C12	C11	C10	C9	179.9	180.0
C12	C11	C10	N15	359.1	359.6
N13	C12	C11	H12	180.0	180.1
C11	C12	N13	C14	359.2	359.9
C10	C11	H11	C12	180.0	179.9
H11	C11	C10	C9	359.9	0.1
H11	C11	C10	N15	179.1	179.7
H11	C11	C12	N13	180.7	180.0
H11	C11	C12	H12	0.7	359.9
N1	C9	C10	C8	179.3	179.7
C9	C10	C11	C12	179.9	180.0
C9	C10	C11	H11	359.9	0.1
C11	C10	C9	N15	179.2	179.6
C9	C10	N15	C14	180.4	180.3
C10	C9	C8	N7	179.6	179.9
C10	C9	C8	H8	359.6	359.9
N15	C10	C11	C12	359.1	359.6
N15	C10	C11	H11	179.1	179.7
C11	C10	N15	C9	180.8	180.4
N15	C10	C9	C8	153.8	320.7
C10	N15	C14	N16	182.0	179.7
C10	N15	C14	N13	358.8	359.3
N1	C9	C8	C10	180.6	180.2
C6	N7	C8	C9	0.1	0.1
C8	C9	C10	N15	153.8	320.7
N7	C8	C9	H8	180.0	180.0
C9	C8	N7	H8	180.0	180.0
C9	C8	H8	N7	180.0	180.0
N13	C12	C11	H11	180.7	180.0
C11	C12	N13	H12	180.0	179.9
N15	C14	N13	C12	1.1	0.4
N16	C14	N13	C12	178.0	180.0
H12	C12	C11	H11	0.7	359.9
C11	C12	H12	N13	180.0	180.1
H12	C12	N13	C14	179.2	180.0
C18	C17	C22	C21	3.2	359.8
C18	C17	C22	H22	183.2	179.9
C22	C17	C18	N16	173.4	180.0
C18	C17	N16	C14	345.6	33.7
C18	C17	N16	H16	165.6	213.7
C19	C18	C17	H18	180.0	179.9
C17	C18	C19	C20	1.2	0.0
C17	C18	C19	H19	181.2	180.0
N16	C17	C22	C21	176.8	179.8
N16	C17	C22	H22	356.8	359.9
C22	C17	N16	C18	186.6	180.0
N16	C17	C18	C19	183.6	180.0
N16	C17	C18	H18	3.6	0.0
N15	C14	N16	C17	352.3	185.2
C17	N16	C14	N13	175.5	5.6
C14	N16	C17	H16	180.0	180.0
C12	N13	C14	N15	1.1	0.4
C17	N16	C14	N15	352.3	185.2
N16	C14	N15	N13	183.3	180.4
N15	C14	N16	H16	172.3	5.2
C12	N13	C14	N16	178.0	180.0
C17	N16	C14	H16	180.0	180.0
N15	C14	N16	N13	176.8	179.6
C14	N13	C12	H12	179.2	180.0
N15	C14	N13	N16	183.0	180.4
N13	C14	N16	H16	355.5	185.6
C19	C18	C17	N16	183.6	180.0
C17	C18	C19	H18	180.0	180.1
C20	C19	C18	H19	180.0	180.0
C18	C19	C20	S23	179.0	180.0
C18	C19	C20	C21	0.7	0.2
H18	C18	C17	N16	3.6	0.0
C17	C18	H18	C19	180.0	179.9
H18	C18	C19	C20	181.2	180.0
H18	C18	C19	H19	1.2	360.0
C22	C21	C20	C19	359.5	359.5
C20	C19	C18	H18	181.2	180.0
C18	C19	C20	H19	180.0	180.0
S23	C20	C19	C21	178.3	179.7
C19	C20	S23	O26	272.2	337.4
C19	C20	S23	O25	153.0	202.6
C19	C20	S23	N24	31.1	90.0
C19	C20	C21	H21	179.5	180.0
H19	C19	C18	H18	1.2	360.0
C18	C19	H19	C20	180.0	180.0
H19	C19	C20	S23	359.0	360.0
H19	C19	C20	C21	180.7	180.2
C22	C21	C20	S23	181.1	179.8
S23	C20	C19	H19	359.0	360.0
C19	C20	S23	C21	181.7	180.3
S23	C20	C21	H21	1.1	0.3
O26	S23	C20	O25	119.2	134.8
O26	S23	C20	N24	241.2	247.4
O25	S23	C20	N24	122.0	112.6
C20	S23	N24	H241	91.9	180.0
C20	S23	N24	H242	212.0	359.6
C20	C21	C22	H22	178.6	180.4
C22	C21	C20	H21	180.0	179.5
C21	C20	C19	H19	180.7	180.2
C19	C20	C21	S23	178.3	179.7
C21	C20	S23	O26	90.6	157.2
C21	C20	S23	O25	331.3	22.3
C21	C20	S23	N24	209.4	269.8
O26	S23	C20	C21	90.6	157.2
C20	S23	O26	O25	239.9	236.8
C20	S23	O26	N24	120.0	113.8
O25	S23	O26	N24	240.1	237.0
O26	S23	N24	H241	209.7	292.6
O26	S23	N24	H242	329.7	112.2
O25	S23	C20	C21	331.3	22.3
C20	S23	O25	O26	117.9	123.2
C20	S23	O25	N24	237.4	246.2
O26	S23	O25	N24	119.5	123.1
O25	S23	N24	H241	329.4	67.4
O25	S23	N24	H242	89.4	247.0
N24	S23	C20	C21	209.4	269.8
C20	S23	N24	O26	242.2	247.4
C20	S23	N24	O25	122.5	112.6
O26	S23	N24	O25	240.3	225.2
H241	N24	S23	H242	240.0	180.4
S23	N24	H241	H242	120.0	179.6
S23	N24	H242	H241	240.0	180.4
H21	C21	C22	H22	358.5	359.9
C22	C21	H21	C20	180.0	180.5
C17	N16	H16	C14	180.0	180.0
H16	N16	C14	N13	355.5	185.6