PDB Chemical Component HCZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HCZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
S02 |
1.716 |
1.657 |
| S02 |
O03 |
1.659 |
1.421 |
| S02 |
O04 |
1.657 |
1.421 |
| S02 |
C05 |
1.825 |
1.762 |
| C05 |
C06 |
1.410 |
1.382 |
| C05 |
C10 |
1.398 |
1.385 |
| C06 |
C07 |
1.423 |
1.379 |
| C07 |
C08 |
1.375 |
1.388 |
| C07 |
S15 |
1.711 |
1.767 |
| C08 |
C09 |
1.433 |
1.394 |
| C08 |
N12 |
1.474 |
1.393 |
| C09 |
C10 |
1.398 |
1.380 |
| C10 |
CL11 |
1.785 |
1.736 |
| N12 |
C13 |
1.509 |
1.461 |
| C13 |
N14 |
1.545 |
1.477 |
| N14 |
S15 |
1.747 |
1.669 |
| S15 |
O16 |
1.463 |
1.421 |
| S15 |
O17 |
1.466 |
1.421 |
| N01 |
HN01 |
1.000 |
0.969 |
| N01 |
HN0A |
1.000 |
0.970 |
| C06 |
H06 |
1.079 |
1.081 |
| C09 |
H09 |
1.080 |
1.080 |
| N12 |
HN12 |
1.000 |
0.970 |
| C13 |
H13 |
1.100 |
1.091 |
| C13 |
H13A |
1.100 |
1.090 |
| N14 |
HN14 |
1.000 |
0.970 |
Bond Angles for HCZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N01 |
S02 |
O03 |
109.6 |
106.4 |
| N01 |
S02 |
O04 |
109.5 |
106.4 |
| N01 |
S02 |
C05 |
109.4 |
107.2 |
| S02 |
N01 |
HN01 |
109.5 |
120.0 |
| S02 |
N01 |
HN0A |
109.5 |
120.0 |
| O03 |
S02 |
O04 |
109.4 |
123.2 |
| O03 |
S02 |
C05 |
109.5 |
106.4 |
| O04 |
S02 |
C05 |
109.5 |
106.4 |
| S02 |
C05 |
C06 |
119.9 |
120.1 |
| S02 |
C05 |
C10 |
120.1 |
120.1 |
| C06 |
C05 |
C10 |
119.9 |
119.8 |
| C05 |
C06 |
C07 |
120.1 |
120.1 |
| C05 |
C06 |
H06 |
119.9 |
120.0 |
| C05 |
C10 |
C09 |
120.0 |
120.3 |
| C05 |
C10 |
CL11 |
120.0 |
119.9 |
| C06 |
C07 |
C08 |
120.0 |
120.6 |
| C06 |
C07 |
S15 |
121.0 |
119.9 |
| C07 |
C06 |
H06 |
120.0 |
119.9 |
| C08 |
C07 |
S15 |
119.1 |
119.5 |
| C07 |
C08 |
C09 |
119.9 |
119.1 |
| C07 |
C08 |
N12 |
119.7 |
122.1 |
| C07 |
S15 |
N14 |
108.5 |
104.8 |
| C07 |
S15 |
O16 |
109.9 |
106.8 |
| C07 |
S15 |
O17 |
109.6 |
106.8 |
| C09 |
C08 |
N12 |
120.3 |
118.8 |
| C08 |
C09 |
C10 |
120.1 |
120.2 |
| C08 |
C09 |
H09 |
119.9 |
120.0 |
| C08 |
N12 |
C13 |
120.7 |
123.3 |
| C08 |
N12 |
HN12 |
105.9 |
118.3 |
| C09 |
C10 |
CL11 |
120.0 |
119.9 |
| C10 |
C09 |
H09 |
119.9 |
119.9 |
| N12 |
C13 |
N14 |
109.4 |
108.7 |
| C13 |
N12 |
HN12 |
105.9 |
118.4 |
| N12 |
C13 |
H13 |
109.5 |
109.5 |
| N12 |
C13 |
H13A |
109.5 |
109.6 |
| C13 |
N14 |
S15 |
119.3 |
115.9 |
| N14 |
C13 |
H13 |
109.5 |
109.6 |
| N14 |
C13 |
H13A |
109.5 |
109.6 |
| C13 |
N14 |
HN14 |
106.3 |
122.1 |
| N14 |
S15 |
O16 |
109.7 |
106.7 |
| N14 |
S15 |
O17 |
109.6 |
106.8 |
| S15 |
N14 |
HN14 |
106.3 |
122.0 |
| O16 |
S15 |
O17 |
109.5 |
123.5 |
| HN01 |
N01 |
HN0A |
109.5 |
120.0 |
| H13 |
C13 |
H13A |
109.4 |
109.7 |
Torsion Angles for HCZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O03 |
S02 |
N01 |
O04 |
120.0 |
227.1 |
| O03 |
S02 |
N01 |
C05 |
240.0 |
113.5 |
| O04 |
S02 |
N01 |
C05 |
120.0 |
246.4 |
| N01 |
S02 |
C05 |
C06 |
111.3 |
115.0 |
| N01 |
S02 |
C05 |
C10 |
291.4 |
294.7 |
| HN01 |
N01 |
S02 |
HN0A |
240.0 |
180.3 |
| N01 |
S02 |
O03 |
O04 |
240.0 |
122.9 |
| N01 |
S02 |
O03 |
C05 |
120.0 |
245.9 |
| O03 |
S02 |
N01 |
HN01 |
180.0 |
353.5 |
| O03 |
S02 |
N01 |
HN0A |
300.0 |
173.2 |
| O04 |
S02 |
O03 |
C05 |
240.0 |
123.0 |
| O03 |
S02 |
C05 |
C06 |
231.4 |
1.5 |
| O03 |
S02 |
C05 |
C10 |
51.5 |
181.2 |
| N01 |
S02 |
O04 |
O03 |
120.0 |
237.1 |
| N01 |
S02 |
O04 |
C05 |
240.1 |
114.1 |
| O04 |
S02 |
N01 |
HN01 |
60.0 |
126.5 |
| O04 |
S02 |
N01 |
HN0A |
180.1 |
306.2 |
| O03 |
S02 |
O04 |
C05 |
120.0 |
237.0 |
| O04 |
S02 |
C05 |
C06 |
351.4 |
228.6 |
| O04 |
S02 |
C05 |
C10 |
171.4 |
48.2 |
| N01 |
S02 |
C05 |
O03 |
239.9 |
113.5 |
| N01 |
S02 |
C05 |
O04 |
120.0 |
246.5 |
| C05 |
S02 |
N01 |
HN01 |
300.0 |
240.0 |
| C05 |
S02 |
N01 |
HN0A |
60.1 |
59.7 |
| O03 |
S02 |
C05 |
O04 |
240.0 |
133.0 |
| C06 |
C05 |
S02 |
C10 |
179.9 |
180.3 |
| S02 |
C05 |
C06 |
C07 |
180.1 |
180.0 |
| S02 |
C05 |
C06 |
H06 |
0.1 |
359.9 |
| S02 |
C05 |
C10 |
C09 |
180.0 |
180.2 |
| S02 |
C05 |
C10 |
CL11 |
2.3 |
0.4 |
| S02 |
C05 |
C06 |
C10 |
180.1 |
179.7 |
| C06 |
C05 |
C10 |
C09 |
0.1 |
359.9 |
| C06 |
C05 |
C10 |
CL11 |
182.3 |
180.1 |
| C05 |
C06 |
C07 |
C08 |
360.0 |
359.2 |
| C05 |
C06 |
C07 |
S15 |
180.0 |
178.6 |
| C07 |
C06 |
C05 |
H06 |
180.0 |
180.1 |
| S02 |
C05 |
C10 |
C06 |
179.9 |
180.3 |
| C10 |
C05 |
C06 |
C07 |
360.0 |
0.3 |
| C10 |
C05 |
C06 |
H06 |
180.0 |
180.2 |
| C08 |
C09 |
C10 |
C05 |
359.9 |
0.5 |
| C09 |
C10 |
C05 |
CL11 |
177.7 |
179.8 |
| C05 |
C10 |
C09 |
H09 |
179.9 |
180.3 |
| C07 |
C06 |
C05 |
C10 |
360.0 |
0.3 |
| C05 |
C06 |
C07 |
H06 |
180.0 |
179.9 |
| C08 |
C07 |
C06 |
S15 |
180.0 |
180.6 |
| C06 |
C07 |
C08 |
C09 |
0.0 |
1.1 |
| C06 |
C07 |
C08 |
N12 |
180.0 |
182.1 |
| C06 |
C07 |
S15 |
N14 |
206.6 |
169.6 |
| C06 |
C07 |
S15 |
O16 |
326.5 |
282.6 |
| C06 |
C07 |
S15 |
O17 |
86.9 |
56.5 |
| C06 |
C07 |
C08 |
S15 |
180.0 |
179.4 |
| C08 |
C07 |
C06 |
H06 |
179.9 |
179.3 |
| C08 |
C07 |
S15 |
N14 |
26.6 |
348.9 |
| C08 |
C07 |
S15 |
O16 |
146.6 |
102.0 |
| C08 |
C07 |
S15 |
O17 |
266.9 |
235.9 |
| C09 |
C08 |
C07 |
N12 |
180.0 |
179.0 |
| C07 |
C08 |
C09 |
C10 |
0.1 |
359.1 |
| C07 |
C08 |
C09 |
H09 |
180.1 |
179.3 |
| C07 |
C08 |
N12 |
C13 |
314.3 |
337.4 |
| C07 |
C08 |
N12 |
HN12 |
74.3 |
157.3 |
| C06 |
C07 |
S15 |
C08 |
180.0 |
180.6 |
| S15 |
C07 |
C06 |
H06 |
360.0 |
358.7 |
| S15 |
C07 |
C08 |
C09 |
180.0 |
181.7 |
| S15 |
C07 |
C08 |
N12 |
0.0 |
2.8 |
| C13 |
N14 |
S15 |
C07 |
344.6 |
39.5 |
| N14 |
S15 |
C07 |
O16 |
240.0 |
247.0 |
| N14 |
S15 |
C07 |
O17 |
119.7 |
113.1 |
| C07 |
S15 |
N14 |
HN14 |
224.6 |
219.6 |
| O16 |
S15 |
C07 |
O17 |
239.6 |
226.1 |
| C05 |
C10 |
C09 |
C08 |
359.9 |
0.5 |
| C09 |
C08 |
C07 |
S15 |
180.0 |
181.7 |
| C07 |
C08 |
C09 |
N12 |
180.0 |
181.0 |
| C09 |
C08 |
N12 |
C13 |
134.4 |
158.4 |
| C09 |
C08 |
N12 |
HN12 |
254.4 |
338.3 |
| C08 |
C09 |
C10 |
CL11 |
177.6 |
180.3 |
| C10 |
C09 |
C08 |
H09 |
180.0 |
179.8 |
| N12 |
C08 |
C07 |
S15 |
0.0 |
2.8 |
| C07 |
C08 |
N12 |
C09 |
180.0 |
179.0 |
| N12 |
C08 |
C09 |
C10 |
180.0 |
178.1 |
| N12 |
C08 |
C09 |
H09 |
0.0 |
358.3 |
| C08 |
N12 |
C13 |
N14 |
53.4 |
50.2 |
| C13 |
N12 |
C08 |
HN12 |
240.0 |
180.1 |
| C08 |
N12 |
C13 |
H13 |
173.4 |
169.9 |
| C08 |
N12 |
C13 |
H13A |
293.4 |
290.3 |
| C05 |
C10 |
C09 |
CL11 |
182.3 |
180.2 |
| C10 |
C09 |
C08 |
N12 |
180.0 |
178.1 |
| C08 |
C09 |
C10 |
H09 |
180.0 |
180.2 |
| C05 |
C10 |
CL11 |
C09 |
177.7 |
179.8 |
| CL11 |
C10 |
C09 |
H09 |
357.6 |
0.1 |
| C08 |
N12 |
C13 |
HN12 |
120.0 |
179.9 |
| N12 |
C13 |
N14 |
S15 |
340.6 |
301.8 |
| N14 |
C13 |
N12 |
H13 |
240.0 |
240.3 |
| N14 |
C13 |
N12 |
H13A |
120.0 |
119.9 |
| N12 |
C13 |
N14 |
HN14 |
100.6 |
121.8 |
| H13 |
C13 |
N12 |
H13A |
240.0 |
239.6 |
| C07 |
S15 |
N14 |
C13 |
344.6 |
39.5 |
| N14 |
C13 |
N12 |
HN12 |
293.4 |
230.3 |
| N12 |
C13 |
N14 |
H13 |
120.0 |
119.7 |
| N12 |
C13 |
N14 |
H13A |
240.0 |
240.2 |
| C13 |
N14 |
S15 |
O16 |
224.6 |
286.5 |
| C13 |
N14 |
S15 |
O17 |
104.2 |
152.6 |
| S15 |
N14 |
C13 |
HN14 |
240.0 |
180.0 |
| H13 |
C13 |
N14 |
H13A |
120.0 |
120.4 |
| C07 |
S15 |
N14 |
O16 |
120.0 |
113.0 |
| C07 |
S15 |
N14 |
O17 |
240.4 |
246.9 |
| S15 |
N14 |
C13 |
H13 |
220.6 |
182.1 |
| S15 |
N14 |
C13 |
H13A |
100.6 |
61.6 |
| C13 |
N14 |
S15 |
HN14 |
120.0 |
180.0 |
| O16 |
S15 |
N14 |
O17 |
120.3 |
133.9 |
| C07 |
S15 |
O16 |
N14 |
240.8 |
248.3 |
| C07 |
S15 |
O16 |
O17 |
120.4 |
124.2 |
| N14 |
S15 |
O16 |
O17 |
239.6 |
235.9 |
| O16 |
S15 |
N14 |
HN14 |
104.6 |
106.5 |
| C07 |
S15 |
O17 |
N14 |
118.9 |
111.7 |
| C07 |
S15 |
O17 |
O16 |
239.4 |
235.8 |
| N14 |
S15 |
O17 |
O16 |
120.5 |
124.1 |
| O17 |
S15 |
N14 |
HN14 |
344.2 |
332.6 |
| HN01 |
N01 |
S02 |
O03 |
180.0 |
353.5 |
| HN01 |
N01 |
S02 |
O04 |
60.0 |
126.5 |
| HN01 |
N01 |
S02 |
C05 |
300.0 |
240.0 |
| S02 |
N01 |
HN01 |
HN0A |
120.0 |
179.7 |
| HN0A |
N01 |
S02 |
O03 |
300.0 |
173.2 |
| HN0A |
N01 |
S02 |
O04 |
180.1 |
306.2 |
| HN0A |
N01 |
S02 |
C05 |
60.1 |
59.7 |
| S02 |
N01 |
HN0A |
HN01 |
240.0 |
180.3 |
| H06 |
C06 |
C05 |
C10 |
180.0 |
180.2 |
| C05 |
C06 |
H06 |
C07 |
180.0 |
180.1 |
| H06 |
C06 |
C07 |
C08 |
179.9 |
179.3 |
| H06 |
C06 |
C07 |
S15 |
360.0 |
358.7 |
| H09 |
C09 |
C08 |
N12 |
0.0 |
358.3 |
| C08 |
C09 |
H09 |
C10 |
180.0 |
179.8 |
| H09 |
C09 |
C10 |
CL11 |
357.6 |
0.1 |
| C08 |
N12 |
HN12 |
C13 |
230.8 |
180.1 |
| HN12 |
N12 |
C13 |
N14 |
293.4 |
230.3 |
| HN12 |
N12 |
C13 |
H13 |
53.4 |
350.0 |
| HN12 |
N12 |
C13 |
H13A |
173.4 |
110.4 |
| N12 |
C13 |
H13 |
N14 |
240.1 |
240.8 |
| H13 |
C13 |
N12 |
HN12 |
53.4 |
350.0 |
| N12 |
C13 |
H13 |
H13A |
120.0 |
120.4 |
| H13 |
C13 |
N14 |
S15 |
220.6 |
182.1 |
| N14 |
C13 |
H13 |
H13A |
240.0 |
239.6 |
| H13 |
C13 |
N14 |
HN14 |
340.6 |
2.1 |
| N12 |
C13 |
H13A |
N14 |
119.9 |
119.3 |
| H13A |
C13 |
N12 |
HN12 |
173.4 |
110.4 |
| N12 |
C13 |
H13A |
H13 |
240.0 |
239.7 |
| H13A |
C13 |
N14 |
S15 |
100.6 |
61.6 |
| N14 |
C13 |
H13A |
H13 |
120.0 |
120.4 |
| H13A |
C13 |
N14 |
HN14 |
220.6 |
241.6 |
| C13 |
N14 |
HN14 |
S15 |
231.9 |
180.0 |
| HN14 |
N14 |
C13 |
H13 |
340.6 |
2.1 |
| HN14 |
N14 |
C13 |
H13A |
220.6 |
241.6 |
| HN14 |
N14 |
S15 |
O16 |
104.6 |
106.5 |
| HN14 |
N14 |
S15 |
O17 |
344.2 |
332.6 |