Atom Nomenclature for HCZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for HCZ

Atom Name (V3) Atom Name (V2)
N01 N01
S02 S02
O03 O03
O04 O04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
CL11 CL11
N12 N12
C13 C13
N14 N14
S15 S15
O16 O16
O17 O17
HN01 HN01
HN0A HN0A
H06 H06
H09 H09
HN12 HN12
H13 H13
H13A H13A
HN14 HN14