PDB Chemical Component HCV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HCV

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C	C1	1.570	1.530
C	H	1.100	1.091
C	HA	1.100	1.091
C	HB	1.100	1.090
C4	N	1.341	1.347
N	C3	1.448	1.466
N	HN	1.000	0.970
O	C4	1.260	1.213
C7	S	1.814	1.814
S	HS	1.300	1.345
C1	C3	1.547	1.530
C1	C2	1.531	1.530
C1	H1	1.100	1.090
C5	N1	1.464	1.465
N1	C8	1.338	1.347
N1	HN1	1.000	0.971
O1	C8	1.230	1.213
C2	H2	1.100	1.090
C2	H2A	1.100	1.090
C2	H2B	1.100	1.090
C12	N2	1.463	1.469
N2	HN2	1.000	1.009
N2	HN2A	1.000	1.009
O2	C13	1.192	1.209
C3	C14	1.520	1.507
C3	H3	1.099	1.090
C13	O3	1.275	1.343
O3	HO3	0.950	0.967
C4	C5	1.527	1.508
C14	O4	1.226	1.343
O4	HO4	0.949	0.967
C6	C5	1.522	1.530
C5	H5	1.100	1.090
C14	O5	1.339	1.209
C6	C7	1.550	1.530
C6	H6	1.100	1.089
C6	H6A	1.100	1.090
C7	H7	1.100	1.090
C7	H7A	1.100	1.091
C8	C9	1.512	1.507
C10	C9	1.523	1.530
C9	H9	1.100	1.090
C9	H9A	1.100	1.090
C11	C10	1.555	1.530
C10	H10	1.100	1.089
C10	H10A	1.100	1.090
C11	C12	1.499	1.530
C11	H11	1.100	1.090
C11	H11A	1.100	1.089
C13	C12	1.550	1.506
C12	H12	1.100	1.091

Bond Angles for HCV

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C	C1	C2	111.8	109.5
C	C1	H1	106.5	109.4
H	C	HA	109.4	109.4
H	C	HB	109.4	109.5
HA	C	HB	109.5	109.5
C4	N	C3	115.1	120.0
C4	N	HN	122.5	120.1
O	C4	N	124.4	120.0
C3	N	HN	122.5	120.0
N	C3	C14	112.7	109.4
N	C3	H3	108.6	109.5
C7	S	HS	102.0	103.0
C6	C7	S	113.4	109.5
S	C7	H7	108.5	109.5
S	C7	H7A	108.5	109.4
C1	C3	C14	112.6	109.4
C1	C3	H3	107.3	109.5
C2	C1	H1	106.9	109.4
C1	C2	H2	109.5	109.4
C1	C2	H2A	109.5	109.4
C1	C2	H2B	109.5	109.5
C5	N1	HN1	118.0	120.0
O1	C8	C9	121.0	120.0
H2	C2	H2A	109.5	109.5
H2	C2	H2B	109.4	109.5
H2A	C2	H2B	109.5	109.5
C12	N2	HN2	109.5	111.0
C12	N2	HN2A	109.5	110.9
C11	C12	N2	105.9	109.5
C13	C12	N2	119.0	109.5
N2	C12	H12	110.4	109.5
HN2	N2	HN2A	109.5	111.1
O2	C13	O3	123.1	119.9
O2	C13	C12	120.4	120.0
C14	C3	H3	107.6	109.5
C3	C14	O4	117.5	120.0
C3	C14	O5	119.2	120.0
C13	O3	HO3	109.5	117.0
C12	C13	O3	116.3	120.1
C4	C5	H5	106.1	109.4
C14	O4	HO4	109.5	117.0
O5	C14	O4	123.3	120.0
C6	C5	H5	106.1	109.5
C7	C6	H6	110.3	109.5
C7	C6	H6A	110.2	109.5
C6	C7	H7	108.5	109.5
C6	C7	H7A	108.5	109.5
H6	C6	H6A	109.5	109.5
H7	C7	H7A	109.5	109.4
C8	C9	H9	108.8	109.5
C8	C9	H9A	108.8	109.5
C10	C9	H9	108.8	109.5
C10	C9	H9A	108.8	109.5
H9	C9	H9A	109.5	109.5
C11	C10	H10	108.2	109.5
C11	C10	H10A	108.2	109.4
C10	C11	H11	111.1	109.5
C10	C11	H11A	111.1	109.5
H10	C10	H10A	109.4	109.5
C11	C12	H12	110.0	109.4
H11	C11	H11A	109.5	109.5
C13	C12	H12	109.3	109.4

Torsion Angles for HCV

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C	C1	C3	C14	205.1	299.9
C	C1	C3	H3	323.3	60.0
C2	C1	C	H1	116.4	119.9
C	C1	C2	H2	180.0	60.1
C	C1	C2	H2A	300.0	180.0
C	C1	C2	H2B	60.0	300.0
H	C	C1	C2	53.3	300.0
H	C	C1	H1	297.0	180.1
HA	C	H	HB	120.0	120.0
HA	C	C1	C2	173.3	59.9
HA	C	C1	H1	57.0	300.0
H	C	HA	HB	240.1	240.0
HB	C	C1	C2	293.3	180.0
HB	C	C1	H1	177.0	60.0
H	C	HB	HA	119.9	120.0
C3	N	C4	HN	180.0	179.9
C4	N	C3	C14	267.1	85.1
C4	N	C3	H3	148.0	325.0
N	C4	C5	H5	308.7	60.0
C4	N	C3	HN	180.0	180.1
O	C4	N	C3	267.3	360.0
C1	C3	N	C14	124.9	119.9
C1	C3	N	H3	244.0	240.0
C14	C3	N	H3	119.1	120.1
N	C3	C14	O4	191.4	180.0
N	C3	C14	O5	11.0	360.0
C4	N	HN	C3	180.0	179.9
O	C4	N	HN	87.3	180.0
HN	N	C3	C14	87.1	265.0
HN	N	C3	H3	328.0	144.9
O	C4	C5	H5	120.1	240.0
S	C7	C6	H6	242.7	60.0
S	C7	C6	H6A	121.7	300.0
C6	C7	S	H7	239.4	120.1
C6	C7	S	H7A	120.6	240.0
H7	C7	S	H7A	241.2	119.9
C6	C7	S	HS	340.2	180.0
HS	S	C7	H7	100.8	59.9
HS	S	C7	H7A	219.6	300.0
C1	C3	N	HN	212.0	24.9
N	C3	C1	C14	235.1	240.1
N	C3	C1	H3	116.8	120.0
C14	C3	C1	H3	241.7	240.0
C1	C3	C14	O4	69.2	60.1
C1	C3	C14	O5	248.7	240.0
C	C1	C2	H1	243.9	240.1
C2	C1	C3	C14	332.0	60.0
C2	C1	C3	H3	90.3	180.0
H2	C2	C1	H2A	240.0	240.1
H2	C2	C1	H2B	120.0	120.1
H2A	C2	C1	H2B	240.0	240.0
C	C1	H1	C2	119.6	119.9
H1	C1	C3	C14	88.2	180.0
H1	C1	C3	H3	206.5	300.0
H1	C1	C2	H2	296.1	180.0
H1	C1	C2	H2A	56.1	299.9
H1	C1	C2	H2B	176.1	59.9
N1	C8	C9	H9	219.3	300.2
N1	C8	C9	H9A	338.5	60.3
O1	C8	C9	H9	42.6	119.9
O1	C8	C9	H9A	161.8	239.9
H2	C2	C1	H1	296.1	180.0
C1	C2	H2	H2A	120.0	119.9
C1	C2	H2	H2B	240.0	239.9
H2A	C2	H2	H2B	120.0	120.0
H2A	C2	C1	H1	56.1	299.9
C1	C2	H2A	H2	240.0	240.1
C1	C2	H2A	H2B	120.0	120.0
H2	C2	H2A	H2B	240.1	239.9
H2B	C2	C1	H1	176.1	59.9
C1	C2	H2B	H2	120.0	120.0
C1	C2	H2B	H2A	240.0	240.0
H2	C2	H2B	H2A	120.0	120.0
HN2	N2	C12	HN2A	240.0	236.0
O2	C13	C12	N2	160.2	339.9
N2	C12	C13	O3	336.4	160.0
C11	C12	N2	H12	119.0	120.0
C13	C12	N2	H12	232.4	240.0
C12	N2	HN2	HN2A	120.0	123.9
C11	C12	N2	HN2	180.0	176.0
C13	C12	N2	HN2	293.5	296.1
HN2	N2	C12	H12	61.0	56.0
C12	N2	HN2A	HN2	240.0	236.1
C11	C12	N2	HN2A	300.0	300.0
C13	C12	N2	HN2A	53.4	60.1
HN2A	N2	C12	H12	181.0	180.0
O2	C13	O3	HO3	0.0	0.1
C12	C13	O2	O3	176.0	180.1
O2	C13	C12	H12	32.1	219.9
C14	C3	N	HN	87.1	265.0
N	C3	C14	H3	240.4	240.0
C1	C3	C14	H3	118.1	120.0
C3	C14	O4	HO4	179.5	180.0
O5	C14	C3	O4	179.5	180.0
H3	C3	N	HN	328.0	144.9
N	C3	H3	C14	122.2	120.0
C1	C3	H3	C14	238.5	240.0
H3	C3	C14	O4	311.1	300.0
H3	C3	C14	O5	130.6	120.0
O3	C13	C12	N2	336.4	160.0
O2	C13	O3	C12	176.1	180.1
O3	C13	C12	H12	208.3	40.0
C12	C13	O3	HO3	183.9	180.0
C4	C5	N1	HN1	305.8	25.0
C6	C5	C4	H5	242.4	240.0
O4	C14	C3	H3	311.1	300.0
C3	C14	O4	O5	179.5	180.0
O5	C14	O4	HO4	0.0	0.0
C6	C5	N1	HN1	175.7	265.0
C4	C5	C6	H5	117.5	120.0
H5	C5	N1	HN1	60.5	145.0
O5	C14	C3	H3	130.6	120.0
C3	C14	O5	O4	180.5	180.0
S	C7	C6	H7	120.6	239.9
S	C7	C6	H7A	239.4	120.0
C7	C6	C5	H5	47.0	55.0
H6	C6	C7	H6A	121.0	120.0
H7	C7	C6	H7A	118.8	240.1
H6	C6	C7	S	242.7	60.0
H6	C6	C5	H5	166.5	175.0
C7	C6	H6	H6A	238.6	240.0
H6	C6	C7	H7	122.1	180.1
H6	C6	C7	H7A	3.3	300.0
H6A	C6	C7	S	121.7	300.0
H6A	C6	C5	H5	287.5	295.0
C7	C6	H6A	H6	121.5	120.0
H6A	C6	C7	H7	1.1	60.1
H6A	C6	C7	H7A	242.3	180.0
H7	C7	S	HS	100.8	59.9
C6	C7	H7	S	123.6	239.9
S	C7	H7	H7A	118.2	240.1
H7	C7	C6	H6	122.1	180.1
H7	C7	C6	H6A	1.1	60.1
C6	C7	H7	H7A	241.8	120.0
H7A	C7	S	HS	219.6	300.0
C6	C7	H7A	S	236.4	120.0
S	C7	H7A	H7	241.8	120.0
H7A	C7	C6	H6	3.3	300.0
H7A	C7	C6	H6A	242.3	180.0
C6	C7	H7A	H7	118.2	240.0
C10	C9	C8	H9	239.6	240.0
C10	C9	C8	H9A	120.4	120.0
H9	C9	C8	H9A	240.8	240.0
C8	C9	C10	H9	120.4	120.0
C8	C9	C10	H9A	239.6	240.0
H9	C9	C10	H9A	119.2	120.0
C8	C9	H9	H9A	118.8	120.0
C10	C9	H9	H9A	241.2	240.0
C8	C9	H9A	H9	241.2	240.0
C10	C9	H9A	H9	118.8	120.0
C10	C11	C12	N2	301.4	295.0
C11	C10	C9	H9	312.7	60.0
C11	C10	C9	H9A	193.5	300.0
H10	C10	C11	H10A	118.5	120.0
C10	C11	C12	H12	60.7	55.0
H11	C11	C10	H11A	237.8	120.0
H10	C10	C9	H9	73.4	180.0
H10	C10	C9	H9A	314.2	60.0
C11	C10	H10	H10A	242.2	240.0
H10	C10	C11	H11	139.3	300.0
H10	C10	C11	H11A	261.5	179.9
H10A	C10	C9	H9	191.9	300.0
H10A	C10	C9	H9A	72.7	180.0
C11	C10	H10A	H10	117.8	120.0
H10A	C10	C11	H11	20.8	180.0
H10A	C10	C11	H11A	143.0	59.9
C13	C12	C11	N2	235.0	239.9
N2	C12	C11	H12	240.7	240.0
C11	C12	C13	O3	92.1	280.1
C13	C12	C11	H12	115.7	120.0
H11	C11	C12	N2	182.5	55.0
H11	C11	C10	H10	139.3	300.0
H11	C11	C10	H10A	20.8	180.0
C10	C11	H11	H11A	123.1	240.0
H11	C11	C12	H12	301.8	175.0
H11A	C11	C12	N2	60.3	175.0
H11A	C11	C10	H10	261.5	179.9
H11A	C11	C10	H10A	143.0	59.9
C10	C11	H11A	H11	236.9	120.0
H11A	C11	C12	H12	179.6	295.0
C11	C12	C13	N2	115.7	120.1
N2	C12	C13	H12	128.1	120.0
O2	C13	C12	O3	183.8	179.9
C11	C12	C13	H12	243.8	240.0
H12	C12	N2	HN2	61.0	56.0
H12	C12	N2	HN2A	181.0	180.0
C11	C12	H12	N2	243.5	240.0
C13	C12	H12	N2	132.7	120.0
H12	C12	C13	O3	208.3	40.0