PDB Chemical Component HCP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HCP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3 C2 1.355 1.387
C3 C4 1.451 1.404
C3 O1 1.434 1.357
C2 N1 1.427 1.318
C2 C2A 1.512 1.507
N1 C6 1.285 1.319
C6 C5 1.478 1.380
C6 HC6 1.103 1.079
C4 C4A 1.492 1.475
C4 C5 1.344 1.399
C4A N2 1.301 1.292
C4A HC4 1.103 1.079
N2 C 1.458 1.465
C CA1 1.572 1.542
C CA2 1.569 1.549
C P2 1.826 1.823
CA1 CB1 1.533 1.540
CA1 HA11 1.115 1.089
CA1 HA12 1.115 1.089
CB1 CB2 1.619 1.542
CB1 HB11 1.115 1.090
CB1 HB12 1.115 1.090
CB2 CA2 1.537 1.548
CB2 HB21 1.115 1.090
CB2 HB22 1.115 1.089
CA2 HA21 1.115 1.090
CA2 HA22 1.115 1.090
P2 O6 1.575 1.610
P2 O7 1.573 1.480
P2 O8 1.569 1.610
O6 HO6 0.950 0.968
O8 HO8 0.950 0.967
O1 HO1 0.950 0.967
C2A HC21 1.115 1.089
C2A HC22 1.115 1.089
C2A HC23 1.114 1.091
C5 C5A 1.475 1.506
C5A O2 1.376 1.429
C5A HC51 1.115 1.089
C5A HC52 1.115 1.090
O2 P1 1.515 1.611
P1 O5 1.534 1.480
P1 O3 1.526 1.610
P1 O4 1.521 1.609
O3 HO3 0.950 0.967
O4 HO4 0.950 0.967

Bond Angles for HCP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C3 C4 118.8 118.9
C2 C3 O1 119.2 120.5
C3 C2 N1 122.2 120.8
C3 C2 C2A 118.2 119.6
C4 C3 O1 122.0 120.6
C3 C4 C4A 119.7 121.0
C3 C4 C5 117.8 118.1
C3 O1 HO1 119.2 106.8
N1 C2 C2A 119.5 119.6
C2 N1 C6 119.9 122.1
C2 C2A HC21 109.0 109.5
C2 C2A HC22 118.2 109.5
C2 C2A HC23 109.1 109.5
N1 C6 C5 119.8 121.1
N1 C6 HC6 113.3 119.5
C5 C6 HC6 127.0 119.5
C6 C5 C4 121.4 119.1
C6 C5 C5A 116.0 120.4
C4A C4 C5 122.3 121.0
C4 C4A N2 124.2 120.0
C4 C4A HC4 125.3 120.0
C4 C5 C5A 122.6 120.5
N2 C4A HC4 110.5 120.0
C4A N2 C 118.6 120.0
N2 C CA1 114.5 110.5
N2 C CA2 110.4 110.5
N2 C P2 102.1 110.4
CA1 C CA2 99.0 104.2
CA1 C P2 118.9 110.5
C CA1 CB1 100.1 106.6
C CA1 HA11 115.8 110.1
C CA1 HA12 115.9 110.0
CA2 C P2 112.1 110.6
C CA2 CB2 99.7 102.7
C CA2 HA21 116.0 110.7
C CA2 HA22 115.9 110.8
C P2 O6 120.1 109.5
C P2 O7 107.2 109.4
C P2 O8 108.7 109.5
CB1 CA1 HA11 115.8 109.9
CB1 CA1 HA12 115.8 110.0
CA1 CB1 CB2 104.3 106.6
CA1 CB1 HB11 114.2 110.1
CA1 CB1 HB12 114.2 110.0
HA11 CA1 HA12 94.6 110.1
CB2 CB1 HB11 114.2 110.1
CB2 CB1 HB12 114.2 110.0
CB1 CB2 CA2 104.7 104.2
CB1 CB2 HB21 114.0 110.4
CB1 CB2 HB22 114.0 110.5
HB11 CB1 HB12 96.3 110.0
CA2 CB2 HB21 114.0 110.5
CA2 CB2 HB22 114.0 110.5
CB2 CA2 HA21 116.0 110.7
CB2 CA2 HA22 116.0 110.8
HB21 CB2 HB22 96.5 110.5
HA21 CA2 HA22 94.4 110.9
O6 P2 O7 107.6 109.5
O6 P2 O8 104.7 109.5
P2 O6 HO6 120.1 106.8
O7 P2 O8 107.9 109.5
P2 O8 HO8 108.7 106.8
HC21 C2A HC22 109.0 109.5
HC21 C2A HC23 101.0 109.4
HC22 C2A HC23 109.1 109.5
C5 C5A O2 114.0 109.5
C5 C5A HC51 110.5 109.5
C5 C5A HC52 110.6 109.4
O2 C5A HC51 110.6 109.5
O2 C5A HC52 110.5 109.5
C5A O2 P1 106.0 106.8
HC51 C5A HC52 99.7 109.4
O2 P1 O5 114.1 109.5
O2 P1 O3 114.1 109.4
O2 P1 O4 101.9 109.5
O5 P1 O3 114.8 109.5
O5 P1 O4 102.2 109.5
O3 P1 O4 107.9 109.5
P1 O3 HO3 114.1 106.7
P1 O4 HO4 101.9 106.8

Torsion Angles for HCP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4 C3 C2 O1 181.3 179.4
C2 C3 C4 C4A 174.5 180.2
C2 C3 C4 C5 358.7 0.6
C2 C3 O1 HO1 180.0 269.4
N1 C2 C3 C2A 177.9 179.7
C3 C2 N1 C6 1.8 0.3
C3 C2 C2A HC21 54.7 269.7
C3 C2 C2A HC22 180.0 29.7
C3 C2 C2A HC23 305.3 149.7
C2 C3 C4 O1 178.7 180.6
C4 C3 C2 N1 0.2 359.4
C4 C3 C2 C2A 182.2 179.7
C4 C3 O1 HO1 358.7 90.0
C6 C5 C4 C3 0.8 359.7
C4A C4 C3 C5 175.8 179.7
C3 C4 C4A N2 2.6 0.4
C3 C4 C4A HC4 182.6 180.3
C3 C4 C5 C5A 180.2 179.6
C2 C3 O1 C4 181.3 179.4
O1 C3 C2 N1 178.9 180.0
O1 C3 C2 C2A 0.9 0.3
O1 C3 C4 C4A 355.8 359.7
O1 C3 C4 C5 180.0 180.0
N1 C2 C3 C4 0.2 359.4
N1 C2 C3 O1 178.9 180.0
C3 C2 N1 C2A 182.1 180.3
N1 C2 C2A HC21 236.7 90.0
N1 C2 C2A HC22 2.0 210.0
N1 C2 C2A HC23 127.3 330.0
C2 N1 C6 C5 357.6 360.0
C2 N1 C6 HC6 177.7 180.0
C2A C2 C3 C4 182.2 179.7
C2A C2 C3 O1 0.9 0.3
C3 C2 C2A N1 178.0 179.7
C2A C2 N1 C6 179.7 180.0
HC21 C2A C2 HC22 234.8 239.9
HC21 C2A C2 HC23 109.5 120.0
HC22 C2A C2 HC23 234.7 240.0
C6 N1 C2 C2A 179.7 180.0
C5 C6 N1 HC6 180.0 180.0
N1 C6 C5 C4 1.1 0.0
N1 C6 C5 C5A 181.6 180.1
C3 C4 C5 C6 0.8 359.7
N1 C6 C5 HC6 180.0 180.0
C4A C4 C5 C6 185.1 180.0
C4 C5 C6 C5A 179.5 179.9
C6 C5 C5A O2 275.4 360.0
C6 C5 C5A HC51 150.1 120.1
C6 C5 C5A HC52 40.6 240.0
N1 C6 HC6 C5 180.0 180.0
HC6 C6 C5 C4 181.1 180.0
HC6 C6 C5 C5A 1.6 0.0
C4A C4 C3 O1 355.8 359.7
C3 C4 C4A C5 184.4 180.4
C6 C5 C4 C4A 185.1 180.0
C4A C4 C5 C5A 4.5 360.0
N2 C4A C4 HC4 180.0 180.1
C4 C4A N2 C 197.3 179.9
C5 C4 C3 O1 180.0 180.0
C3 C4 C5 C4A 175.7 179.7
C4 C5 C6 HC6 181.1 180.0
C6 C5 C4 C5A 180.5 180.1
C5 C4 C4A N2 178.2 180.0
C5 C4 C4A HC4 358.2 359.9
C4 C5 C5A O2 95.9 180.0
C4 C5 C5A HC51 330.6 300.1
C4 C5 C5A HC52 221.1 60.0
N2 C4A C4 C5 178.2 180.0
C4 C4A N2 HC4 180.0 179.9
C4A N2 C CA1 328.7 180.0
C4A N2 C CA2 79.3 294.8
C4A N2 C P2 198.8 57.4
HC4 C4A C4 C5 358.2 359.9
C4 C4A HC4 N2 180.0 180.1
HC4 C4A N2 C 17.3 0.0
C N2 C4A HC4 17.3 0.0
CA1 C N2 CA2 249.4 245.2
CA1 C N2 P2 129.9 122.5
N2 C CA1 CB1 171.0 95.1
N2 C CA1 HA11 45.8 214.3
N2 C CA1 HA12 296.3 335.8
CA2 C N2 P2 240.5 237.4
N2 C CA2 CB2 186.3 279.2
N2 C CA2 HA21 61.0 37.5
N2 C CA2 HA22 311.5 160.9
N2 C P2 O6 185.2 180.7
N2 C P2 O7 308.3 60.7
N2 C P2 O8 64.6 300.8
N2 C CA1 CA2 117.4 118.7
N2 C CA1 P2 239.0 237.5
CA2 C CA1 P2 121.6 118.8
CA1 C CA2 CB2 306.7 38.0
CA1 C CA2 HA21 181.4 156.2
CA1 C CA2 HA22 72.0 279.7
CA1 C P2 O6 58.1 58.2
CA1 C P2 O7 181.2 298.1
CA1 C P2 O8 297.6 178.2
CB1 CA1 C HA11 125.2 240.8
CB1 CA1 C HA12 234.7 119.3
C CA1 CB1 CB2 327.3 359.9
C CA1 CB1 HB11 202.1 119.3
C CA1 CB1 HB12 92.6 240.7
HA11 CA1 C HA12 109.5 238.4
N2 C CA2 CA1 239.6 241.2
N2 C CA2 P2 113.2 122.5
CA1 C CA2 P2 233.6 241.3
CA2 C CA1 CB1 53.6 336.4
CA2 C CA1 HA11 288.4 95.6
CA2 C CA1 HA12 178.9 217.1
CA2 C P2 O6 303.4 303.3
CA2 C P2 O7 66.5 183.3
CA2 C P2 O8 182.9 63.3
CB1 CB2 CA2 C 32.6 322.0
C CA2 CB2 HB21 157.8 203.4
C CA2 CB2 HB22 267.3 80.8
CB2 CA2 C HA21 125.3 241.7
CB2 CA2 C HA22 234.7 118.3
HA21 CA2 C HA22 109.5 236.6
N2 C P2 CA1 127.1 122.6
N2 C P2 CA2 241.7 237.4
CA1 C P2 CA2 114.7 114.8
P2 C CA1 CB1 292.1 217.6
P2 C CA1 HA11 166.8 336.8
P2 C CA1 HA12 57.3 98.4
P2 C CA2 CB2 73.1 156.7
P2 C CA2 HA21 307.8 274.9
P2 C CA2 HA22 198.3 38.4
O6 P2 C O7 236.9 120.0
O6 P2 C O8 120.5 240.0
C P2 O6 HO6 180.0 180.0
O7 P2 C O8 243.6 120.0
C P2 O8 HO8 180.0 299.9
CB1 CA1 C CA2 53.6 336.4
CB1 CA1 C P2 292.1 217.6
C CA1 CB1 HA11 234.8 119.3
C CA1 CB1 HA12 125.3 240.7
HA11 CA1 CB1 HA12 250.5 121.4
CB2 CB1 CA1 HB11 125.3 240.6
CB2 CB1 CA1 HB12 234.7 119.2
CA1 CB1 CB2 CA2 0.1 23.7
CA1 CB1 CB2 HB21 234.8 142.3
CA1 CB1 CB2 HB22 125.3 265.0
HB11 CB1 CA1 HB12 109.4 238.6
HA11 CA1 C CA2 288.4 95.6
HA11 CA1 C P2 166.8 336.8
C CA1 HA11 CB1 116.7 242.9
C CA1 HA11 HA12 238.3 121.5
CB1 CA1 HA11 HA12 121.6 238.6
HA11 CA1 CB1 CB2 92.6 240.7
HA11 CA1 CB1 HB11 327.3 0.1
HA11 CA1 CB1 HB12 217.9 121.4
HA12 CA1 C CA2 178.9 217.1
HA12 CA1 C P2 57.3 98.4
C CA1 HA12 CB1 243.3 117.1
C CA1 HA12 HA11 121.7 238.5
CB1 CA1 HA12 HA11 238.4 121.3
HA12 CA1 CB1 CB2 202.0 119.2
HA12 CA1 CB1 HB11 76.8 238.6
HA12 CA1 CB1 HB12 327.3 360.0
C CA2 CB2 CB1 32.6 322.0
CB2 CB1 CA1 HA11 92.6 240.7
CB2 CB1 CA1 HA12 202.0 119.2
CA1 CB1 CB2 HB11 234.7 119.4
CA1 CB1 CB2 HB12 125.3 240.8
HB11 CB1 CB2 HB12 250.6 121.4
CA2 CB2 CB1 HB21 125.3 241.4
CA2 CB2 CB1 HB22 234.7 118.7
CB1 CB2 CA2 HA21 157.9 203.7
CB1 CB2 CA2 HA22 267.4 80.3
HB21 CB2 CB1 HB22 109.5 237.3
HB11 CB1 CA1 HA11 327.3 0.1
HB11 CB1 CA1 HA12 76.8 238.6
CA1 CB1 HB11 CB2 119.9 242.8
CA1 CB1 HB11 HB12 239.9 121.3
CB2 CB1 HB11 HB12 120.1 238.6
HB11 CB1 CB2 CA2 125.3 264.3
HB11 CB1 CB2 HB21 0.1 22.9
HB11 CB1 CB2 HB22 250.6 145.6
HB12 CB1 CA1 HA11 217.9 121.4
HB12 CB1 CA1 HA12 327.3 360.0
CA1 CB1 HB12 CB2 240.1 117.1
CA1 CB1 HB12 HB11 120.1 238.6
CB2 CB1 HB12 HB11 239.9 121.5
HB12 CB1 CB2 CA2 234.8 142.9
HB12 CB1 CB2 HB21 109.5 261.5
HB12 CB1 CB2 HB22 0.0 24.2
CB2 CA2 C P2 73.1 156.7
C CA2 CB2 HA21 234.7 118.3
C CA2 CB2 HA22 125.2 241.7
CA2 CB2 CB1 HB11 125.3 264.3
CA2 CB2 CB1 HB12 234.8 142.9
CB1 CB2 CA2 HB21 234.7 118.6
CB1 CB2 CA2 HB22 125.3 241.2
HB21 CB2 CA2 HB22 250.5 122.6
HA21 CA2 CB2 HA22 250.5 123.4
HB21 CB2 CB1 HB11 0.1 22.9
HB21 CB2 CB1 HB12 109.5 261.5
CB1 CB2 HB21 CA2 120.2 245.2
CB1 CB2 HB21 HB22 240.1 122.7
CA2 CB2 HB21 HB22 119.9 237.4
HB21 CB2 CA2 HA21 283.1 85.1
HB21 CB2 CA2 HA22 32.6 321.7
HB22 CB2 CB1 HB11 250.6 145.6
HB22 CB2 CB1 HB12 0.0 24.2
CB1 CB2 HB22 CA2 239.8 114.8
CB1 CB2 HB22 HB21 119.9 237.4
CA2 CB2 HB22 HB21 240.1 122.6
HB22 CB2 CA2 HA21 32.6 322.5
HB22 CB2 CA2 HA22 142.1 199.1
HA21 CA2 C P2 307.8 274.9
C CA2 HA21 CB2 116.5 246.7
C CA2 HA21 HA22 238.3 123.4
HA21 CA2 CB2 HB21 283.1 85.1
HA21 CA2 CB2 HB22 32.6 322.5
CB2 CA2 HA21 HA22 121.8 236.6
HA22 CA2 C P2 198.3 38.4
C CA2 HA22 CB2 243.5 113.3
C CA2 HA22 HA21 121.8 236.7
HA22 CA2 CB2 HB21 32.6 321.7
HA22 CA2 CB2 HB22 142.1 199.1
CB2 CA2 HA22 HA21 238.2 123.4
C P2 O6 O7 123.0 240.0
C P2 O6 O8 237.5 120.0
O7 P2 O6 O8 114.6 240.0
O6 P2 O8 HO8 50.4 59.9
C P2 O7 O6 229.4 120.0
C P2 O7 O8 116.9 240.1
O6 P2 O7 O8 247.5 120.1
O7 P2 O6 HO6 57.0 300.0
O7 P2 O8 HO8 296.0 180.0
C P2 O8 O6 129.6 240.0
C P2 O8 O7 244.0 119.9
O6 P2 O8 O7 114.4 239.9
O8 P2 O6 HO6 302.4 60.0
HO6 O6 P2 O7 57.0 300.0
HO6 O6 P2 O8 302.4 60.0
C2 C2A HC21 HC22 130.4 120.0
C2 C2A HC21 HC23 245.2 240.0
HC22 C2A HC21 HC23 114.8 120.0
C2 C2A HC22 HC21 234.8 239.9
C2 C2A HC22 HC23 125.3 120.0
HC21 C2A HC22 HC23 250.5 240.0
C2 C2A HC23 HC21 114.8 120.0
C2 C2A HC23 HC22 229.5 240.0
HC21 C2A HC23 HC22 114.8 120.0
C5A C5 C6 HC6 1.6 0.0
C6 C5 C5A C4 179.5 179.9
O2 C5A C5 HC51 125.3 239.9
O2 C5A C5 HC52 234.8 120.0
C5 C5A O2 P1 198.0 180.1
HC51 C5A C5 HC52 109.5 240.1
C5 C5A O2 HC51 234.8 120.1
C5 C5A O2 HC52 125.3 240.1
HC51 C5A O2 HC52 250.5 120.0
C5A O2 P1 O5 19.0 60.0
C5A O2 P1 O3 153.6 180.0
C5A O2 P1 O4 269.6 300.0
C5 C5A HC51 O2 127.2 239.9
C5 C5A HC51 HC52 243.6 119.9
O2 C5A HC51 HC52 116.4 240.0
HC51 C5A O2 P1 323.2 60.0
C5 C5A HC52 O2 232.8 120.0
C5 C5A HC52 HC51 116.4 240.0
O2 C5A HC52 HC51 243.6 120.0
HC52 C5A O2 P1 72.7 300.0
P1 O2 C5A HC51 323.2 60.0
P1 O2 C5A HC52 72.7 300.0
O5 P1 O2 O3 225.4 240.0
O5 P1 O2 O4 109.3 120.0
O3 P1 O2 O4 244.0 240.0
O2 P1 O3 HO3 180.0 180.0
O2 P1 O4 HO4 180.0 300.0
O2 P1 O5 O3 134.3 120.0
O2 P1 O5 O4 250.9 240.0
O3 P1 O5 O4 116.5 120.0
O5 P1 O3 HO3 314.3 299.9
O5 P1 O4 HO4 61.8 180.0
O2 P1 O3 O5 225.7 240.0
O2 P1 O3 O4 112.4 120.0
O5 P1 O3 O4 246.8 239.9
O3 P1 O4 HO4 300.4 60.0
O2 P1 O4 O5 118.2 120.0
O2 P1 O4 O3 239.6 240.0
O5 P1 O4 O3 121.4 120.0
O4 P1 O3 HO3 67.6 60.0
HO3 O3 P1 O4 67.6 60.0