PDB Chemical Component HCL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HCL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.261 |
1.209 |
| C |
CA |
1.566 |
1.507 |
| C |
OXT |
1.430 |
1.342 |
| N |
CA |
1.486 |
1.469 |
| N |
H2 |
1.000 |
1.009 |
| N |
H |
1.000 |
1.009 |
| CL |
C2 |
1.724 |
1.735 |
| C1 |
C2 |
1.395 |
1.383 |
| C1 |
C5 |
1.387 |
1.382 |
| C1 |
CA |
1.542 |
1.507 |
| C2 |
C3 |
1.384 |
1.389 |
| C3 |
O3 |
1.358 |
1.359 |
| C3 |
C4 |
1.391 |
1.386 |
| O3 |
HO3 |
0.949 |
0.967 |
| C4 |
C6 |
1.390 |
1.387 |
| C4 |
H4 |
1.080 |
1.080 |
| O4 |
C6 |
1.383 |
1.359 |
| O4 |
HO4 |
0.951 |
0.967 |
| C5 |
C6 |
1.394 |
1.388 |
| C5 |
H5 |
1.080 |
1.079 |
| CA |
HA |
1.100 |
1.089 |
| OXT |
HXT |
0.950 |
0.968 |
Bond Angles for HCL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
116.9 |
120.0 |
| O |
C |
OXT |
121.5 |
120.0 |
| CA |
C |
OXT |
121.5 |
120.0 |
| C |
CA |
N |
117.5 |
109.4 |
| C |
CA |
C1 |
111.3 |
109.4 |
| C |
CA |
HA |
106.1 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| CA |
N |
H |
109.5 |
111.0 |
| N |
CA |
C1 |
107.9 |
109.5 |
| N |
CA |
HA |
107.0 |
109.5 |
| H2 |
N |
H |
109.5 |
111.0 |
| CL |
C2 |
C1 |
122.1 |
120.0 |
| CL |
C2 |
C3 |
117.5 |
120.0 |
| C2 |
C1 |
C5 |
119.1 |
120.1 |
| C2 |
C1 |
CA |
121.3 |
119.9 |
| C1 |
C2 |
C3 |
120.4 |
120.0 |
| C5 |
C1 |
CA |
119.6 |
120.0 |
| C1 |
C5 |
C6 |
120.4 |
120.0 |
| C1 |
C5 |
H5 |
119.8 |
120.0 |
| C1 |
CA |
HA |
106.4 |
109.5 |
| C2 |
C3 |
O3 |
118.1 |
120.0 |
| C2 |
C3 |
C4 |
120.6 |
119.9 |
| O3 |
C3 |
C4 |
121.4 |
120.0 |
| C3 |
O3 |
HO3 |
109.5 |
114.0 |
| C3 |
C4 |
C6 |
119.1 |
119.9 |
| C3 |
C4 |
H4 |
120.4 |
120.1 |
| C6 |
C4 |
H4 |
120.4 |
120.0 |
| C4 |
C6 |
O4 |
119.6 |
120.0 |
| C4 |
C6 |
C5 |
120.3 |
120.0 |
| C6 |
O4 |
HO4 |
109.5 |
114.0 |
| O4 |
C6 |
C5 |
119.9 |
120.0 |
| C6 |
C5 |
H5 |
119.8 |
120.0 |
Torsion Angles for HCL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
OXT |
180.0 |
180.2 |
| O |
C |
CA |
N |
157.4 |
340.1 |
| O |
C |
CA |
C1 |
282.5 |
100.0 |
| O |
C |
CA |
HA |
37.8 |
220.1 |
| O |
C |
OXT |
HXT |
0.0 |
359.9 |
| O |
C |
CA |
OXT |
180.0 |
179.8 |
| CA |
C |
OXT |
HXT |
180.0 |
179.7 |
| C |
CA |
N |
H2 |
180.0 |
296.0 |
| C |
CA |
N |
H |
300.0 |
60.1 |
| N |
CA |
C |
C1 |
234.9 |
240.0 |
| N |
CA |
C |
HA |
119.6 |
120.0 |
| C2 |
C1 |
CA |
C |
97.7 |
85.1 |
| C5 |
C1 |
CA |
C |
276.5 |
264.7 |
| C1 |
CA |
C |
HA |
244.7 |
240.0 |
| O |
C |
OXT |
CA |
180.0 |
180.2 |
| OXT |
C |
CA |
N |
337.5 |
160.3 |
| OXT |
C |
CA |
C1 |
102.6 |
280.2 |
| OXT |
C |
CA |
HA |
217.9 |
40.3 |
| N |
CA |
C |
OXT |
337.5 |
160.3 |
| C |
CA |
N |
C1 |
126.8 |
119.9 |
| C |
CA |
N |
HA |
240.9 |
240.0 |
| H2 |
N |
CA |
H |
240.0 |
236.0 |
| C2 |
C1 |
CA |
N |
228.0 |
205.0 |
| C5 |
C1 |
CA |
N |
46.8 |
24.6 |
| C1 |
CA |
N |
HA |
114.1 |
120.1 |
| CA |
N |
H2 |
H |
120.0 |
124.0 |
| H2 |
N |
CA |
C1 |
53.2 |
176.1 |
| H2 |
N |
CA |
HA |
299.1 |
56.0 |
| CA |
N |
H |
H2 |
240.0 |
236.0 |
| H |
N |
CA |
C1 |
173.2 |
300.1 |
| H |
N |
CA |
HA |
59.1 |
180.0 |
| CL |
C2 |
C1 |
C5 |
180.9 |
180.0 |
| CL |
C2 |
C1 |
CA |
359.7 |
359.6 |
| C1 |
C2 |
CL |
C3 |
179.5 |
180.1 |
| CL |
C2 |
C3 |
O3 |
358.8 |
0.1 |
| CL |
C2 |
C3 |
C4 |
179.1 |
180.0 |
| C |
CA |
C1 |
C2 |
97.7 |
85.1 |
| N |
CA |
C1 |
C2 |
228.0 |
205.0 |
| CL |
C2 |
C1 |
C3 |
180.5 |
179.9 |
| C5 |
C1 |
C2 |
CA |
181.2 |
180.4 |
| C2 |
C1 |
C5 |
C6 |
0.2 |
360.0 |
| C2 |
C1 |
C5 |
H5 |
180.2 |
179.9 |
| C2 |
C1 |
CA |
HA |
342.5 |
325.1 |
| C1 |
C2 |
C3 |
O3 |
179.3 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
359.6 |
359.9 |
| C |
CA |
C1 |
C5 |
276.5 |
264.7 |
| N |
CA |
C1 |
C5 |
46.8 |
24.6 |
| C2 |
C1 |
C5 |
CA |
178.8 |
179.6 |
| C5 |
C1 |
C2 |
C3 |
0.4 |
0.1 |
| C5 |
C1 |
CA |
HA |
161.3 |
144.7 |
| C4 |
C6 |
C5 |
C1 |
359.1 |
359.9 |
| O4 |
C6 |
C5 |
C1 |
173.9 |
180.0 |
| C6 |
C5 |
C1 |
H5 |
180.0 |
180.1 |
| C1 |
CA |
C |
OXT |
102.6 |
280.2 |
| C |
CA |
C1 |
N |
229.7 |
240.1 |
| C |
CA |
C1 |
HA |
115.1 |
120.0 |
| C1 |
CA |
N |
H2 |
53.2 |
176.1 |
| C1 |
CA |
N |
H |
173.2 |
300.1 |
| N |
CA |
C1 |
HA |
245.5 |
239.9 |
| C2 |
C1 |
CA |
C5 |
181.2 |
180.4 |
| CA |
C1 |
C2 |
C3 |
179.2 |
179.7 |
| CA |
C1 |
C5 |
C6 |
181.4 |
180.3 |
| CA |
C1 |
C5 |
H5 |
1.4 |
0.3 |
| CL |
C2 |
C3 |
C1 |
179.5 |
180.1 |
| C3 |
C2 |
C1 |
C5 |
0.4 |
0.1 |
| C3 |
C2 |
C1 |
CA |
179.2 |
179.7 |
| O3 |
C3 |
C2 |
C4 |
179.7 |
180.0 |
| C2 |
C3 |
O3 |
HO3 |
180.0 |
90.0 |
| C2 |
C3 |
C4 |
C6 |
359.6 |
360.0 |
| C2 |
C3 |
C4 |
H4 |
179.6 |
180.0 |
| C2 |
C3 |
O3 |
C4 |
180.3 |
180.0 |
| O3 |
C3 |
C4 |
C6 |
180.0 |
180.0 |
| O3 |
C3 |
C4 |
H4 |
360.0 |
360.0 |
| C2 |
C3 |
C4 |
O3 |
179.7 |
180.0 |
| C4 |
C3 |
O3 |
HO3 |
359.7 |
270.0 |
| C6 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C6 |
O4 |
186.2 |
180.0 |
| C3 |
C4 |
C6 |
C5 |
1.0 |
0.1 |
| HO3 |
O3 |
C3 |
C4 |
359.7 |
270.0 |
| C1 |
C5 |
C6 |
C4 |
359.1 |
359.9 |
| C3 |
C4 |
C6 |
H4 |
180.0 |
180.0 |
| C4 |
C6 |
O4 |
HO4 |
180.0 |
90.0 |
| O4 |
C6 |
C4 |
C5 |
185.2 |
179.9 |
| C4 |
C6 |
C5 |
H5 |
179.1 |
180.0 |
| C3 |
C4 |
H4 |
C6 |
180.0 |
180.0 |
| H4 |
C4 |
C6 |
O4 |
6.2 |
360.0 |
| H4 |
C4 |
C6 |
C5 |
181.0 |
180.1 |
| C1 |
C5 |
C6 |
O4 |
173.9 |
180.0 |
| O4 |
C6 |
C4 |
H4 |
6.2 |
360.0 |
| C4 |
C6 |
O4 |
C5 |
174.8 |
180.1 |
| O4 |
C6 |
C5 |
H5 |
353.9 |
0.1 |
| HO4 |
O4 |
C6 |
C5 |
5.2 |
270.0 |
| C6 |
C5 |
C1 |
CA |
181.4 |
180.3 |
| C1 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| C5 |
C6 |
C4 |
H4 |
181.0 |
180.1 |
| C4 |
C6 |
C5 |
O4 |
185.2 |
179.9 |
| C5 |
C6 |
O4 |
HO4 |
5.2 |
270.0 |
| H5 |
C5 |
C1 |
CA |
1.4 |
0.3 |
| C1 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| HA |
CA |
C |
OXT |
217.9 |
40.3 |
| C |
CA |
HA |
N |
126.3 |
120.0 |
| C |
CA |
HA |
C1 |
241.4 |
240.0 |
| HA |
CA |
N |
H2 |
299.1 |
56.0 |
| HA |
CA |
N |
H |
59.1 |
180.0 |
| N |
CA |
HA |
C1 |
115.1 |
120.1 |