PDB Chemical Component HCI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HCI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.219 |
1.208 |
| C1 |
O2 |
1.288 |
1.342 |
| C1 |
C2 |
1.560 |
1.507 |
| O2 |
HO2 |
0.950 |
0.967 |
| C2 |
C3 |
1.570 |
1.530 |
| C2 |
H21 |
1.100 |
1.089 |
| C2 |
H22 |
1.100 |
1.090 |
| C3 |
C1' |
1.523 |
1.507 |
| C3 |
H31 |
1.100 |
1.091 |
| C3 |
H32 |
1.100 |
1.090 |
| C1' |
C2' |
1.396 |
1.382 |
| C1' |
C6' |
1.399 |
1.382 |
| C2' |
C3' |
1.399 |
1.382 |
| C2' |
H2' |
1.080 |
1.080 |
| C3' |
C4' |
1.391 |
1.382 |
| C3' |
H3' |
1.080 |
1.081 |
| C4' |
C5' |
1.393 |
1.383 |
| C4' |
H4' |
1.080 |
1.080 |
| C5' |
C6' |
1.396 |
1.383 |
| C5' |
H5' |
1.080 |
1.080 |
| C6' |
H6' |
1.080 |
1.081 |
Bond Angles for HCI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
O2 |
120.6 |
120.0 |
| O1 |
C1 |
C2 |
116.1 |
120.0 |
| O2 |
C1 |
C2 |
123.3 |
120.0 |
| C1 |
O2 |
HO2 |
109.5 |
117.0 |
| C1 |
C2 |
C3 |
113.5 |
109.5 |
| C1 |
C2 |
H21 |
108.5 |
109.5 |
| C1 |
C2 |
H22 |
108.5 |
109.5 |
| C3 |
C2 |
H21 |
108.4 |
109.5 |
| C3 |
C2 |
H22 |
108.5 |
109.5 |
| C2 |
C3 |
C1' |
113.8 |
109.5 |
| C2 |
C3 |
H31 |
108.4 |
109.5 |
| C2 |
C3 |
H32 |
108.4 |
109.5 |
| H21 |
C2 |
H22 |
109.5 |
109.4 |
| C1' |
C3 |
H31 |
108.4 |
109.4 |
| C1' |
C3 |
H32 |
108.4 |
109.4 |
| C3 |
C1' |
C2' |
122.3 |
120.0 |
| C3 |
C1' |
C6' |
120.3 |
120.0 |
| H31 |
C3 |
H32 |
109.5 |
109.5 |
| C2' |
C1' |
C6' |
117.4 |
120.0 |
| C1' |
C2' |
C3' |
118.3 |
120.0 |
| C1' |
C2' |
H2' |
120.9 |
120.1 |
| C1' |
C6' |
C5' |
124.2 |
120.0 |
| C1' |
C6' |
H6' |
117.9 |
120.0 |
| C3' |
C2' |
H2' |
120.9 |
120.0 |
| C2' |
C3' |
C4' |
122.5 |
120.0 |
| C2' |
C3' |
H3' |
118.7 |
120.0 |
| C4' |
C3' |
H3' |
118.7 |
120.0 |
| C3' |
C4' |
C5' |
118.9 |
120.0 |
| C3' |
C4' |
H4' |
120.6 |
120.1 |
| C5' |
C4' |
H4' |
120.5 |
120.0 |
| C4' |
C5' |
C6' |
117.4 |
120.0 |
| C4' |
C5' |
H5' |
121.3 |
120.0 |
| C6' |
C5' |
H5' |
121.3 |
120.0 |
| C5' |
C6' |
H6' |
117.9 |
120.0 |
Torsion Angles for HCI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C1 |
O1 |
C2 |
179.8 |
180.3 |
| O1 |
C1 |
O2 |
HO2 |
0.0 |
359.9 |
| O1 |
C1 |
C2 |
C3 |
124.2 |
360.0 |
| O1 |
C1 |
C2 |
H21 |
244.7 |
120.0 |
| O1 |
C1 |
C2 |
H22 |
3.6 |
240.0 |
| O1 |
C1 |
O2 |
C2 |
180.2 |
179.7 |
| O2 |
C1 |
C2 |
C3 |
304.4 |
179.7 |
| O2 |
C1 |
C2 |
H21 |
64.9 |
299.7 |
| O2 |
C1 |
C2 |
H22 |
183.8 |
59.7 |
| O1 |
C1 |
C2 |
O2 |
179.8 |
180.3 |
| C2 |
C1 |
O2 |
HO2 |
179.8 |
180.2 |
| C3 |
C2 |
C1 |
H21 |
239.4 |
240.0 |
| C3 |
C2 |
C1 |
H22 |
120.6 |
120.0 |
| C1 |
C2 |
C3 |
C1' |
280.7 |
180.0 |
| C1 |
C2 |
C3 |
H31 |
41.4 |
300.0 |
| C1 |
C2 |
C3 |
H32 |
160.1 |
60.0 |
| H21 |
C2 |
C1 |
H22 |
241.2 |
240.0 |
| HO2 |
O2 |
C1 |
C2 |
179.8 |
180.2 |
| C1 |
C2 |
C3 |
H21 |
120.6 |
120.1 |
| C1 |
C2 |
C3 |
H22 |
239.4 |
240.0 |
| H21 |
C2 |
C3 |
H22 |
118.8 |
119.9 |
| C1' |
C3 |
C2 |
H31 |
239.3 |
240.0 |
| C1' |
C3 |
C2 |
H32 |
120.6 |
120.0 |
| C2 |
C3 |
C1' |
C2' |
259.2 |
90.0 |
| C2 |
C3 |
C1' |
C6' |
82.5 |
269.8 |
| H31 |
C3 |
C2 |
H32 |
241.3 |
240.0 |
| C1 |
C2 |
H21 |
C3 |
236.4 |
240.0 |
| C1 |
C2 |
H21 |
H22 |
118.2 |
120.0 |
| C3 |
C2 |
H21 |
H22 |
241.8 |
240.1 |
| H21 |
C2 |
C3 |
C1' |
160.1 |
59.9 |
| H21 |
C2 |
C3 |
H31 |
280.8 |
180.0 |
| H21 |
C2 |
C3 |
H32 |
39.5 |
300.0 |
| C1 |
C2 |
H22 |
C3 |
123.7 |
120.0 |
| C1 |
C2 |
H22 |
H21 |
241.8 |
239.9 |
| C3 |
C2 |
H22 |
H21 |
118.2 |
120.0 |
| H22 |
C2 |
C3 |
C1' |
41.3 |
300.0 |
| H22 |
C2 |
C3 |
H31 |
162.0 |
60.0 |
| H22 |
C2 |
C3 |
H32 |
280.7 |
180.0 |
| C1' |
C3 |
C2 |
H21 |
160.1 |
59.9 |
| C1' |
C3 |
C2 |
H22 |
41.3 |
300.0 |
| C2 |
C3 |
C1' |
H31 |
120.6 |
120.1 |
| C2 |
C3 |
C1' |
H32 |
239.4 |
240.0 |
| H31 |
C3 |
C1' |
H32 |
118.7 |
119.9 |
| C2' |
C1' |
C3 |
C6' |
176.7 |
180.2 |
| C3 |
C1' |
C2' |
C3' |
173.8 |
180.0 |
| C3 |
C1' |
C2' |
H2' |
353.8 |
0.0 |
| C3 |
C1' |
C6' |
C5' |
180.8 |
179.7 |
| C3 |
C1' |
C6' |
H6' |
0.8 |
360.0 |
| H31 |
C3 |
C2 |
H21 |
280.8 |
180.0 |
| H31 |
C3 |
C2 |
H22 |
162.0 |
60.0 |
| C2 |
C3 |
H31 |
C1' |
236.1 |
239.9 |
| C2 |
C3 |
H31 |
H32 |
118.1 |
120.0 |
| C1' |
C3 |
H31 |
H32 |
242.0 |
240.1 |
| H31 |
C3 |
C1' |
C2' |
138.6 |
329.9 |
| H31 |
C3 |
C1' |
C6' |
321.9 |
149.7 |
| H32 |
C3 |
C2 |
H21 |
39.5 |
300.0 |
| H32 |
C3 |
C2 |
H22 |
280.7 |
180.0 |
| C2 |
C3 |
H32 |
C1' |
123.9 |
120.0 |
| C2 |
C3 |
H32 |
H31 |
242.0 |
239.9 |
| C1' |
C3 |
H32 |
H31 |
118.1 |
119.9 |
| H32 |
C3 |
C1' |
C2' |
19.9 |
210.0 |
| H32 |
C3 |
C1' |
C6' |
203.2 |
29.8 |
| C2' |
C1' |
C3 |
H31 |
138.6 |
329.9 |
| C2' |
C1' |
C3 |
H32 |
19.9 |
210.0 |
| C3 |
C1' |
C2' |
C6' |
183.2 |
179.8 |
| C2' |
C1' |
C6' |
C5' |
3.9 |
359.5 |
| C2' |
C1' |
C6' |
H6' |
183.9 |
179.8 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
13.8 |
0.0 |
| C1' |
C2' |
C3' |
H3' |
193.8 |
180.0 |
| C6' |
C1' |
C3 |
H31 |
321.9 |
149.7 |
| C6' |
C1' |
C3 |
H32 |
203.2 |
29.8 |
| C3 |
C1' |
C6' |
C2' |
176.9 |
180.2 |
| C6' |
C1' |
C2' |
C3' |
350.6 |
0.2 |
| C6' |
C1' |
C2' |
H2' |
170.6 |
180.2 |
| C4' |
C5' |
C6' |
C1' |
358.1 |
0.4 |
| C1' |
C6' |
C5' |
H5' |
178.1 |
180.3 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.7 |
| C3' |
C2' |
C1' |
C6' |
350.6 |
0.2 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
180.1 |
| C2' |
C3' |
C4' |
C5' |
348.2 |
359.9 |
| C2' |
C3' |
C4' |
H4' |
168.2 |
180.0 |
| H2' |
C2' |
C1' |
C6' |
170.6 |
180.2 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
C4' |
193.8 |
180.1 |
| H2' |
C2' |
C3' |
H3' |
13.8 |
360.0 |
| C4' |
C3' |
C2' |
H2' |
193.8 |
180.1 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
179.9 |
| C5' |
C4' |
C3' |
H4' |
180.0 |
179.9 |
| C3' |
C4' |
C5' |
C6' |
5.5 |
359.8 |
| C3' |
C4' |
C5' |
H5' |
185.5 |
180.0 |
| H3' |
C3' |
C2' |
H2' |
13.8 |
360.0 |
| C2' |
C3' |
H3' |
C4' |
180.0 |
180.1 |
| H3' |
C3' |
C4' |
C5' |
168.2 |
180.0 |
| H3' |
C3' |
C4' |
H4' |
348.3 |
0.1 |
| C1' |
C6' |
C5' |
C4' |
358.1 |
0.4 |
| C5' |
C4' |
C3' |
H3' |
168.2 |
180.0 |
| C3' |
C4' |
C5' |
H4' |
180.0 |
180.1 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
179.8 |
| C4' |
C5' |
C6' |
H6' |
178.1 |
180.2 |
| H4' |
C4' |
C3' |
H3' |
348.3 |
0.1 |
| C3' |
C4' |
H4' |
C5' |
180.0 |
179.9 |
| H4' |
C4' |
C5' |
C6' |
185.5 |
179.8 |
| H4' |
C4' |
C5' |
H5' |
5.5 |
359.9 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.3 |
| C6' |
C5' |
C4' |
H4' |
185.5 |
179.8 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.2 |
| H5' |
C5' |
C4' |
H4' |
5.5 |
359.9 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
179.8 |
| H5' |
C5' |
C6' |
H6' |
358.1 |
0.0 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.7 |
| H6' |
C6' |
C5' |
H5' |
358.1 |
0.0 |