PDB Chemical Component HCE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HCE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.253 |
1.208 |
| OXT |
C |
1.237 |
1.343 |
| C |
CA |
1.525 |
1.508 |
| CB |
CA |
1.510 |
1.530 |
| CB |
CG |
1.500 |
1.529 |
| CA |
N |
1.463 |
1.469 |
| S5' |
CG |
1.854 |
1.814 |
| S5' |
C5' |
1.810 |
1.814 |
| C2 |
N1 |
1.387 |
1.322 |
| C2 |
N3 |
1.402 |
1.314 |
| N1 |
C6 |
1.348 |
1.329 |
| C5' |
C4' |
1.556 |
1.530 |
| C3' |
C2' |
1.552 |
1.543 |
| C3' |
C4' |
1.502 |
1.543 |
| C3' |
O3' |
1.459 |
1.430 |
| N3 |
C4 |
1.355 |
1.336 |
| C6 |
N6 |
1.352 |
1.386 |
| C6 |
C5 |
1.365 |
1.399 |
| C2' |
N1' |
1.499 |
1.486 |
| C4' |
C1' |
1.505 |
1.544 |
| C4 |
C5 |
1.365 |
1.406 |
| C4 |
C9 |
1.346 |
1.459 |
| C5 |
N7 |
1.351 |
1.375 |
| C1' |
N1' |
1.507 |
1.486 |
| N1' |
C10 |
1.441 |
1.470 |
| C9 |
C10 |
1.587 |
1.507 |
| C9 |
C8 |
1.343 |
1.346 |
| N7 |
C8 |
1.322 |
1.364 |
| OXT |
H1 |
0.950 |
0.967 |
| CA |
H2 |
1.100 |
1.089 |
| N |
H3 |
1.000 |
1.009 |
| N |
H4 |
1.000 |
1.009 |
| CB |
H6 |
1.100 |
1.090 |
| CB |
H7 |
1.100 |
1.090 |
| CG |
H8 |
1.100 |
1.090 |
| CG |
H9 |
1.100 |
1.090 |
| C5' |
H10 |
1.100 |
1.090 |
| C5' |
H11 |
1.100 |
1.090 |
| C4' |
H12 |
1.100 |
1.090 |
| C1' |
H13 |
1.100 |
1.090 |
| C1' |
H14 |
1.100 |
1.090 |
| C3' |
H15 |
1.100 |
1.090 |
| O3' |
H16 |
0.950 |
0.967 |
| C2' |
H17 |
1.100 |
1.090 |
| C2' |
H18 |
1.100 |
1.090 |
| C10 |
H20 |
1.100 |
1.090 |
| C10 |
H21 |
1.100 |
1.090 |
| C8 |
H22 |
1.080 |
1.080 |
| N7 |
H23 |
1.000 |
0.970 |
| C2 |
H24 |
1.080 |
1.080 |
| N6 |
H25 |
1.000 |
0.969 |
| N6 |
H26 |
1.000 |
0.970 |
Bond Angles for HCE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
118.6 |
120.0 |
| OXT |
C |
CA |
116.1 |
120.0 |
| C |
CA |
N |
110.1 |
109.5 |
| C |
CA |
H2 |
108.7 |
109.5 |
| CB |
CA |
H2 |
108.9 |
109.5 |
| CG |
CB |
H6 |
110.5 |
109.5 |
| CG |
CB |
H7 |
110.5 |
109.5 |
| CB |
CG |
H8 |
109.6 |
109.5 |
| CB |
CG |
H9 |
109.6 |
109.5 |
| N |
CA |
H2 |
109.5 |
109.5 |
| CA |
N |
H3 |
109.5 |
111.0 |
| CA |
N |
H4 |
109.4 |
111.0 |
| S5' |
CG |
H8 |
109.6 |
109.5 |
| S5' |
CG |
H9 |
109.6 |
109.4 |
| S5' |
C5' |
C4' |
109.2 |
109.5 |
| S5' |
C5' |
H10 |
109.5 |
109.5 |
| S5' |
C5' |
H11 |
109.6 |
109.5 |
| C2 |
N1 |
C6 |
118.9 |
121.4 |
| N1 |
C2 |
H24 |
120.3 |
118.8 |
| N1 |
C6 |
N6 |
117.8 |
120.7 |
| C5' |
C4' |
C1' |
108.7 |
110.3 |
| C4' |
C5' |
H10 |
109.6 |
109.5 |
| C4' |
C5' |
H11 |
109.5 |
109.5 |
| C5' |
C4' |
H12 |
109.7 |
110.3 |
| O3' |
C3' |
C2' |
110.2 |
110.3 |
| C3' |
C2' |
N1' |
96.1 |
104.6 |
| C2' |
C3' |
H15 |
109.6 |
110.4 |
| C3' |
C2' |
H17 |
112.7 |
110.5 |
| C3' |
C2' |
H18 |
112.7 |
110.4 |
| C3' |
C4' |
H12 |
110.4 |
110.4 |
| O3' |
C3' |
H15 |
110.9 |
110.4 |
| C3' |
O3' |
H16 |
109.5 |
114.0 |
| C6 |
N6 |
H25 |
109.5 |
120.0 |
| C6 |
N6 |
H26 |
109.5 |
120.0 |
| C1' |
N1' |
C2' |
109.0 |
104.2 |
| C2' |
N1' |
C10 |
118.6 |
111.0 |
| N1' |
C2' |
H17 |
112.7 |
110.4 |
| N1' |
C2' |
H18 |
112.7 |
110.3 |
| C4' |
C1' |
N1' |
104.9 |
104.6 |
| C1' |
C4' |
H12 |
110.4 |
110.3 |
| C4' |
C1' |
H13 |
110.6 |
110.4 |
| C4' |
C1' |
H14 |
110.6 |
110.4 |
| C5 |
N7 |
H23 |
125.1 |
125.1 |
| C1' |
N1' |
C10 |
112.7 |
111.0 |
| N1' |
C1' |
H13 |
110.6 |
110.4 |
| N1' |
C1' |
H14 |
110.6 |
110.4 |
| N1' |
C10 |
H20 |
107.4 |
109.4 |
| N1' |
C10 |
H21 |
107.4 |
109.4 |
| C9 |
C10 |
H20 |
107.4 |
109.5 |
| C9 |
C10 |
H21 |
107.4 |
109.5 |
| C9 |
C8 |
H22 |
126.0 |
125.0 |
| N7 |
C8 |
H22 |
126.1 |
125.1 |
| H3 |
N |
H4 |
109.5 |
111.0 |
| H6 |
CB |
H7 |
109.5 |
109.5 |
| H8 |
CG |
H9 |
109.5 |
109.5 |
| H10 |
C5' |
H11 |
109.5 |
109.5 |
| H13 |
C1' |
H14 |
109.5 |
110.5 |
| H17 |
C2' |
H18 |
109.5 |
110.5 |
| H20 |
C10 |
H21 |
109.5 |
109.5 |
| H25 |
N6 |
H26 |
109.4 |
120.0 |
Torsion Angles for HCE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OXT |
C |
O |
CA |
183.0 |
180.3 |
| O |
C |
CA |
N |
330.1 |
340.0 |
| O |
C |
CA |
H2 |
210.1 |
220.0 |
| O |
C |
OXT |
CA |
177.1 |
179.7 |
| OXT |
C |
CA |
N |
147.4 |
159.7 |
| OXT |
C |
CA |
H2 |
27.4 |
39.7 |
| CB |
CA |
C |
H2 |
241.9 |
240.0 |
| N |
CA |
C |
H2 |
120.0 |
120.0 |
| C |
CA |
N |
H3 |
180.0 |
60.0 |
| C |
CA |
N |
H4 |
300.0 |
183.9 |
| C |
CA |
CB |
H2 |
118.0 |
120.0 |
| N |
CA |
CB |
H2 |
239.1 |
240.0 |
| CB |
CA |
N |
H3 |
60.1 |
300.0 |
| CB |
CA |
N |
H4 |
180.1 |
64.0 |
| CG |
CB |
CA |
H2 |
43.6 |
55.0 |
| S5' |
CG |
CB |
H8 |
240.1 |
240.0 |
| S5' |
CG |
CB |
H9 |
119.9 |
120.0 |
| H6 |
CB |
CG |
H7 |
121.3 |
120.0 |
| H8 |
CG |
CB |
H9 |
239.8 |
240.0 |
| C |
CA |
N |
H2 |
240.5 |
240.0 |
| CB |
CA |
N |
H2 |
120.6 |
120.0 |
| H3 |
N |
CA |
H4 |
240.0 |
236.0 |
| S5' |
CG |
CB |
H6 |
66.4 |
60.0 |
| S5' |
CG |
CB |
H7 |
305.1 |
300.0 |
| CB |
CG |
S5' |
H8 |
119.9 |
120.0 |
| CB |
CG |
S5' |
H9 |
240.1 |
240.0 |
| H8 |
CG |
S5' |
H9 |
120.2 |
120.0 |
| C5' |
S5' |
CG |
H8 |
91.1 |
60.0 |
| C5' |
S5' |
CG |
H9 |
330.9 |
300.0 |
| S5' |
C5' |
C4' |
C1' |
175.2 |
66.5 |
| C4' |
C5' |
S5' |
H10 |
240.0 |
240.0 |
| C4' |
C5' |
S5' |
H11 |
119.9 |
120.0 |
| S5' |
C5' |
C4' |
H12 |
54.4 |
304.3 |
| H10 |
C5' |
S5' |
H11 |
239.9 |
240.0 |
| C2 |
N1 |
C6 |
N6 |
180.7 |
180.0 |
| C6 |
N1 |
C2 |
H24 |
177.5 |
180.0 |
| N1 |
C6 |
N6 |
H25 |
0.0 |
359.9 |
| N1 |
C6 |
N6 |
H26 |
120.0 |
180.0 |
| S5' |
C5' |
C4' |
H10 |
119.9 |
120.0 |
| S5' |
C5' |
C4' |
H11 |
240.0 |
240.0 |
| C3' |
C4' |
C5' |
H12 |
235.9 |
237.8 |
| C5' |
C4' |
C1' |
N1' |
111.5 |
142.7 |
| C1' |
C4' |
C5' |
H12 |
120.7 |
122.2 |
| C5' |
C4' |
C1' |
H13 |
230.8 |
261.5 |
| C5' |
C4' |
C1' |
H14 |
352.3 |
24.0 |
| H10 |
C5' |
C4' |
H11 |
120.1 |
120.0 |
| C2' |
C3' |
C4' |
H12 |
153.2 |
119.0 |
| O3' |
C3' |
C2' |
H15 |
237.7 |
237.7 |
| C2' |
C3' |
O3' |
H16 |
180.0 |
61.5 |
| C1' |
N1' |
C2' |
C3' |
38.5 |
39.5 |
| C3' |
C2' |
N1' |
C10 |
169.3 |
159.0 |
| N1' |
C2' |
C3' |
H17 |
242.3 |
241.2 |
| N1' |
C2' |
C3' |
H18 |
117.7 |
118.7 |
| H17 |
C2' |
C3' |
H18 |
235.4 |
237.5 |
| C3' |
C4' |
C5' |
H10 |
170.4 |
62.0 |
| C3' |
C4' |
C5' |
H11 |
50.3 |
302.0 |
| C5' |
C4' |
C3' |
H12 |
123.7 |
122.2 |
| C3' |
C4' |
C1' |
N1' |
350.2 |
23.9 |
| C1' |
C4' |
C3' |
H12 |
241.6 |
241.0 |
| C3' |
C4' |
C1' |
H13 |
109.5 |
142.6 |
| C3' |
C4' |
C1' |
H14 |
231.0 |
265.1 |
| O3' |
C3' |
C2' |
N1' |
74.5 |
95.0 |
| C2' |
C3' |
O3' |
H15 |
121.5 |
122.2 |
| O3' |
C3' |
C2' |
H17 |
192.3 |
213.8 |
| O3' |
C3' |
C2' |
H18 |
316.8 |
336.3 |
| O3' |
C3' |
C4' |
H12 |
34.2 |
0.1 |
| H25 |
N6 |
C6 |
H26 |
240.0 |
179.9 |
| C6 |
C5 |
N7 |
H23 |
359.8 |
0.1 |
| N1' |
C2' |
C3' |
H15 |
196.8 |
217.2 |
| C3' |
C2' |
N1' |
H17 |
117.7 |
118.8 |
| C3' |
C2' |
N1' |
H18 |
242.3 |
241.2 |
| C4' |
C1' |
N1' |
C2' |
340.4 |
320.5 |
| C1' |
N1' |
C2' |
C10 |
229.2 |
240.5 |
| C2' |
N1' |
C1' |
H13 |
221.1 |
201.7 |
| C2' |
N1' |
C1' |
H14 |
99.7 |
79.3 |
| C2' |
N1' |
C10 |
H20 |
51.9 |
194.6 |
| C2' |
N1' |
C10 |
H21 |
169.6 |
314.6 |
| H17 |
C2' |
N1' |
H18 |
124.5 |
122.4 |
| C1' |
C4' |
C5' |
H10 |
55.2 |
306.5 |
| C1' |
C4' |
C5' |
H11 |
295.1 |
186.5 |
| C5' |
C4' |
C1' |
H12 |
239.7 |
237.9 |
| C3' |
C4' |
C1' |
H12 |
118.4 |
119.0 |
| C4' |
C1' |
N1' |
C10 |
206.5 |
201.0 |
| N1' |
C1' |
C4' |
H13 |
240.7 |
241.2 |
| N1' |
C1' |
C4' |
H14 |
119.2 |
118.8 |
| H13 |
C1' |
C4' |
H14 |
238.5 |
237.5 |
| C4 |
C5 |
N7 |
H23 |
178.3 |
179.8 |
| C4 |
C9 |
C10 |
H20 |
311.6 |
319.7 |
| C4 |
C9 |
C10 |
H21 |
194.0 |
199.6 |
| C4 |
C9 |
C8 |
H22 |
177.9 |
180.2 |
| C5 |
N7 |
C8 |
H22 |
182.4 |
180.1 |
| C3' |
C2' |
N1' |
C1' |
38.5 |
39.5 |
| C2' |
N1' |
C1' |
C10 |
133.9 |
119.6 |
| C1' |
N1' |
C2' |
H17 |
280.8 |
280.7 |
| C1' |
N1' |
C2' |
H18 |
156.3 |
158.2 |
| N1' |
C1' |
C4' |
H12 |
231.8 |
264.9 |
| C4' |
C1' |
N1' |
H13 |
119.3 |
118.8 |
| C4' |
C1' |
N1' |
H14 |
240.7 |
241.3 |
| C1' |
N1' |
C10 |
H20 |
181.1 |
310.0 |
| C1' |
N1' |
C10 |
H21 |
298.7 |
70.0 |
| H13 |
C1' |
N1' |
H14 |
121.5 |
122.5 |
| C1' |
N1' |
C10 |
C2' |
129.1 |
115.4 |
| C10 |
N1' |
C2' |
H17 |
51.6 |
40.2 |
| C10 |
N1' |
C2' |
H18 |
287.1 |
277.8 |
| C10 |
N1' |
C1' |
H13 |
87.2 |
82.2 |
| C10 |
N1' |
C1' |
H14 |
325.8 |
319.7 |
| C9 |
C10 |
N1' |
H20 |
238.8 |
240.0 |
| C9 |
C10 |
N1' |
H21 |
121.2 |
120.0 |
| H20 |
C10 |
N1' |
H21 |
242.3 |
240.0 |
| N1' |
C10 |
C9 |
H20 |
121.2 |
120.0 |
| N1' |
C10 |
C9 |
H21 |
238.8 |
240.0 |
| H20 |
C10 |
C9 |
H21 |
117.7 |
120.0 |
| C8 |
C9 |
C10 |
H20 |
128.3 |
140.1 |
| C8 |
C9 |
C10 |
H21 |
10.7 |
20.0 |
| N7 |
C8 |
C9 |
H22 |
180.0 |
180.1 |
| C9 |
C8 |
N7 |
H22 |
180.0 |
179.9 |
| H1 |
OXT |
C |
CA |
182.9 |
180.3 |
| C |
CA |
H2 |
N |
120.3 |
120.0 |
| H2 |
CA |
N |
H3 |
299.5 |
180.0 |
| H2 |
CA |
N |
H4 |
59.5 |
304.0 |
| H3 |
N |
CA |
H2 |
299.5 |
180.0 |
| CA |
N |
H3 |
H4 |
120.0 |
123.9 |
| H4 |
N |
CA |
H2 |
59.5 |
304.0 |
| CA |
N |
H4 |
H3 |
240.0 |
236.0 |
| H6 |
CB |
CA |
H2 |
162.9 |
175.0 |
| CG |
CB |
H6 |
H7 |
238.1 |
240.0 |
| H6 |
CB |
CG |
H8 |
186.3 |
180.0 |
| H6 |
CB |
CG |
H9 |
306.5 |
300.0 |
| H7 |
CB |
CA |
H2 |
284.2 |
295.0 |
| CG |
CB |
H7 |
H6 |
121.9 |
120.0 |
| H7 |
CB |
CG |
H8 |
65.0 |
60.0 |
| H7 |
CB |
CG |
H9 |
185.2 |
180.0 |
| H8 |
CG |
CB |
H6 |
186.3 |
180.0 |
| H8 |
CG |
CB |
H7 |
65.0 |
60.0 |
| CB |
CG |
H8 |
H9 |
120.2 |
120.0 |
| S5' |
CG |
H8 |
H9 |
239.8 |
240.0 |
| H9 |
CG |
CB |
H6 |
306.5 |
300.0 |
| H9 |
CG |
CB |
H7 |
185.2 |
180.0 |
| CB |
CG |
H9 |
H8 |
239.7 |
240.0 |
| S5' |
CG |
H9 |
H8 |
120.2 |
120.0 |
| S5' |
C5' |
H10 |
C4' |
240.3 |
240.0 |
| S5' |
C5' |
H10 |
H11 |
120.2 |
120.0 |
| H10 |
C5' |
C4' |
C1' |
55.2 |
306.5 |
| C4' |
C5' |
H10 |
H11 |
239.9 |
240.0 |
| H10 |
C5' |
C4' |
H12 |
294.5 |
184.3 |
| S5' |
C5' |
H11 |
C4' |
119.7 |
120.0 |
| S5' |
C5' |
H11 |
H10 |
239.9 |
239.9 |
| H11 |
C5' |
C4' |
C1' |
295.1 |
186.5 |
| C4' |
C5' |
H11 |
H10 |
120.1 |
120.0 |
| H11 |
C5' |
C4' |
H12 |
174.4 |
64.3 |
| C5' |
C4' |
H12 |
C1' |
119.7 |
122.2 |
| H12 |
C4' |
C5' |
H10 |
294.5 |
184.3 |
| H12 |
C4' |
C5' |
H11 |
174.4 |
64.3 |
| H12 |
C4' |
C1' |
N1' |
231.8 |
264.9 |
| H12 |
C4' |
C1' |
H13 |
351.1 |
23.6 |
| H12 |
C4' |
C1' |
H14 |
112.6 |
146.1 |
| H13 |
C1' |
N1' |
C2' |
221.1 |
201.7 |
| C4' |
C1' |
H13 |
N1' |
244.2 |
244.8 |
| H13 |
C1' |
C4' |
H12 |
351.1 |
23.6 |
| C4' |
C1' |
H13 |
H14 |
122.1 |
122.4 |
| H13 |
C1' |
N1' |
C10 |
87.2 |
82.2 |
| N1' |
C1' |
H13 |
H14 |
237.9 |
237.6 |
| H14 |
C1' |
N1' |
C2' |
99.7 |
79.3 |
| C4' |
C1' |
H14 |
N1' |
115.8 |
115.2 |
| H14 |
C1' |
C4' |
H12 |
112.6 |
146.1 |
| C4' |
C1' |
H14 |
H13 |
237.9 |
237.6 |
| H14 |
C1' |
N1' |
C10 |
325.8 |
319.7 |
| N1' |
C1' |
H14 |
H13 |
122.1 |
122.4 |
| O3' |
C3' |
H15 |
C2' |
121.8 |
122.2 |
| H15 |
C3' |
C2' |
N1' |
196.8 |
217.2 |
| H15 |
C3' |
C2' |
H17 |
314.5 |
336.0 |
| H15 |
C3' |
C2' |
H18 |
79.1 |
98.5 |
| H15 |
C3' |
C4' |
H12 |
271.5 |
237.9 |
| H15 |
C3' |
O3' |
H16 |
58.5 |
299.3 |
| H16 |
O3' |
C3' |
C2' |
180.0 |
61.5 |
| H16 |
O3' |
C3' |
H15 |
58.5 |
299.3 |
| C3' |
C2' |
H17 |
N1' |
252.6 |
244.8 |
| H17 |
C2' |
C3' |
H15 |
314.5 |
336.0 |
| C3' |
C2' |
H17 |
H18 |
126.3 |
122.5 |
| H17 |
C2' |
N1' |
C10 |
51.6 |
40.2 |
| N1' |
C2' |
H17 |
H18 |
233.7 |
237.7 |
| C3' |
C2' |
H18 |
N1' |
107.4 |
115.2 |
| H18 |
C2' |
C3' |
H15 |
79.1 |
98.5 |
| C3' |
C2' |
H18 |
H17 |
233.7 |
237.5 |
| H18 |
C2' |
N1' |
C10 |
287.1 |
277.8 |
| N1' |
C2' |
H18 |
H17 |
126.3 |
122.4 |
| N1' |
C10 |
H20 |
H21 |
116.3 |
119.9 |
| C9 |
C10 |
H20 |
H21 |
243.7 |
239.9 |
| N1' |
C10 |
H21 |
H20 |
243.7 |
240.1 |
| C9 |
C10 |
H21 |
H20 |
116.3 |
120.1 |
| H23 |
N7 |
C8 |
H22 |
2.4 |
0.0 |
| H24 |
C2 |
N1 |
C6 |
177.5 |
180.0 |
| C6 |
N6 |
H25 |
H26 |
120.0 |
180.1 |
| C6 |
N6 |
H26 |
H25 |
240.0 |
179.9 |