PDB Chemical Component HCC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HCC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.376 |
1.391 |
C1 |
C6 |
1.545 |
1.386 |
C1 |
O19 |
1.291 |
1.358 |
C2 |
C3 |
1.582 |
1.375 |
C2 |
H2 |
1.102 |
1.080 |
C3 |
C4 |
1.396 |
1.398 |
C3 |
H3 |
1.103 |
1.080 |
C4 |
C5 |
1.563 |
1.403 |
C4 |
C7 |
1.580 |
1.475 |
C5 |
C6 |
1.396 |
1.384 |
C5 |
O10 |
1.357 |
1.357 |
C6 |
H6 |
1.103 |
1.080 |
C7 |
C8 |
1.554 |
1.462 |
C7 |
O17 |
1.231 |
1.219 |
C8 |
C9 |
1.541 |
1.351 |
C8 |
H8 |
1.102 |
1.079 |
C9 |
C11 |
1.520 |
1.470 |
C9 |
H9 |
1.104 |
1.079 |
O10 |
H10 |
0.950 |
0.967 |
C11 |
C12 |
1.515 |
1.400 |
C11 |
C16 |
1.546 |
1.399 |
C12 |
C13 |
1.547 |
1.376 |
C12 |
H12 |
1.103 |
1.080 |
C13 |
C14 |
1.385 |
1.389 |
C13 |
H13 |
1.104 |
1.081 |
C14 |
C15 |
1.538 |
1.391 |
C14 |
O18 |
1.341 |
1.357 |
C15 |
C16 |
1.370 |
1.376 |
C15 |
H15 |
1.102 |
1.080 |
C16 |
H16 |
1.102 |
1.080 |
O18 |
H18 |
0.949 |
0.966 |
O19 |
H19 |
0.950 |
0.966 |
Bond Angles for HCC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
118.4 |
120.3 |
C2 |
C1 |
O19 |
117.9 |
119.9 |
C1 |
C2 |
C3 |
121.0 |
120.3 |
C1 |
C2 |
H2 |
112.5 |
119.9 |
C6 |
C1 |
O19 |
123.7 |
119.8 |
C1 |
C6 |
C5 |
122.4 |
120.0 |
C1 |
C6 |
H6 |
124.1 |
120.0 |
C1 |
O19 |
H19 |
117.8 |
106.8 |
C3 |
C2 |
H2 |
126.5 |
119.8 |
C2 |
C3 |
C4 |
119.8 |
119.9 |
C2 |
C3 |
H3 |
126.3 |
120.1 |
C4 |
C3 |
H3 |
113.9 |
120.0 |
C3 |
C4 |
C5 |
119.3 |
119.8 |
C3 |
C4 |
C7 |
122.5 |
120.1 |
C5 |
C4 |
C7 |
118.2 |
120.1 |
C4 |
C5 |
C6 |
119.1 |
119.8 |
C4 |
C5 |
O10 |
119.3 |
120.1 |
C4 |
C7 |
C8 |
115.5 |
120.0 |
C4 |
C7 |
O17 |
123.0 |
120.0 |
C6 |
C5 |
O10 |
121.6 |
120.1 |
C5 |
C6 |
H6 |
113.5 |
120.0 |
C5 |
O10 |
H10 |
119.3 |
106.8 |
C8 |
C7 |
O17 |
121.5 |
120.0 |
C7 |
C8 |
C9 |
113.8 |
120.0 |
C7 |
C8 |
H8 |
123.4 |
120.0 |
C9 |
C8 |
H8 |
122.7 |
120.0 |
C8 |
C9 |
C11 |
114.8 |
119.9 |
C8 |
C9 |
H9 |
123.3 |
120.0 |
C11 |
C9 |
H9 |
122.0 |
120.0 |
C9 |
C11 |
C12 |
119.5 |
120.1 |
C9 |
C11 |
C16 |
123.1 |
120.1 |
C12 |
C11 |
C16 |
117.4 |
119.7 |
C11 |
C12 |
C13 |
118.2 |
119.9 |
C11 |
C12 |
H12 |
119.9 |
120.1 |
C11 |
C16 |
C15 |
121.0 |
119.9 |
C11 |
C16 |
H16 |
125.6 |
120.1 |
C13 |
C12 |
H12 |
121.8 |
120.0 |
C12 |
C13 |
C14 |
121.4 |
120.1 |
C12 |
C13 |
H13 |
124.9 |
119.9 |
C14 |
C13 |
H13 |
113.8 |
119.9 |
C13 |
C14 |
C15 |
119.7 |
120.2 |
C13 |
C14 |
O18 |
120.7 |
119.9 |
C15 |
C14 |
O18 |
119.7 |
119.9 |
C14 |
C15 |
C16 |
122.4 |
120.1 |
C14 |
C15 |
H15 |
124.8 |
119.9 |
C14 |
O18 |
H18 |
120.7 |
106.9 |
C16 |
C15 |
H15 |
112.8 |
120.0 |
C15 |
C16 |
H16 |
113.5 |
120.1 |
Torsion Angles for HCC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
O19 |
180.0 |
179.9 |
C2 |
C1 |
C6 |
C5 |
359.9 |
359.8 |
C2 |
C1 |
C6 |
H6 |
179.9 |
180.0 |
C2 |
C1 |
O19 |
H19 |
180.0 |
90.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
360.0 |
360.0 |
C1 |
C2 |
C3 |
H3 |
180.0 |
180.1 |
C2 |
C1 |
C6 |
O19 |
180.0 |
180.1 |
C6 |
C1 |
C2 |
C3 |
0.1 |
360.0 |
C6 |
C1 |
C2 |
H2 |
180.1 |
180.0 |
C6 |
C1 |
O19 |
H19 |
0.0 |
270.1 |
C4 |
C5 |
C6 |
C1 |
360.0 |
0.5 |
C1 |
C6 |
C5 |
O10 |
180.1 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
179.8 |
C2 |
C1 |
O19 |
C6 |
180.0 |
179.9 |
O19 |
C1 |
C2 |
C3 |
180.1 |
180.0 |
O19 |
C1 |
C2 |
H2 |
0.1 |
0.1 |
O19 |
C1 |
C6 |
C5 |
179.9 |
179.7 |
O19 |
C1 |
C6 |
H6 |
359.9 |
359.9 |
C3 |
C2 |
C1 |
C6 |
0.1 |
360.0 |
C3 |
C2 |
C1 |
O19 |
180.1 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
C2 |
C3 |
C4 |
C5 |
359.9 |
0.3 |
C2 |
C3 |
C4 |
C7 |
180.0 |
180.0 |
H2 |
C2 |
C1 |
C6 |
180.1 |
180.0 |
H2 |
C2 |
C1 |
O19 |
0.1 |
0.1 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
C4 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
H3 |
0.0 |
0.0 |
C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
C5 |
C4 |
C3 |
C7 |
179.9 |
180.3 |
C3 |
C4 |
C5 |
C6 |
0.1 |
359.5 |
C3 |
C4 |
C5 |
O10 |
180.0 |
180.0 |
C3 |
C4 |
C7 |
C8 |
349.5 |
359.9 |
C3 |
C4 |
C7 |
O17 |
169.5 |
180.0 |
H3 |
C3 |
C2 |
H2 |
0.0 |
0.0 |
C2 |
C3 |
H3 |
C4 |
180.0 |
179.9 |
H3 |
C3 |
C4 |
C5 |
179.9 |
180.2 |
H3 |
C3 |
C4 |
C7 |
360.0 |
359.9 |
C1 |
C6 |
C5 |
C4 |
360.0 |
0.5 |
C5 |
C4 |
C3 |
H3 |
179.9 |
180.2 |
C3 |
C4 |
C5 |
C7 |
180.1 |
179.7 |
C5 |
C4 |
C7 |
C8 |
169.5 |
179.7 |
C5 |
C4 |
C7 |
O17 |
349.6 |
359.7 |
C6 |
C5 |
C4 |
O10 |
180.1 |
179.5 |
C4 |
C5 |
C6 |
H6 |
180.0 |
180.3 |
C4 |
C5 |
O10 |
H10 |
180.0 |
269.5 |
C7 |
C4 |
C3 |
H3 |
360.0 |
359.9 |
C3 |
C4 |
C7 |
C5 |
179.9 |
180.3 |
C7 |
C4 |
C5 |
C6 |
180.0 |
179.8 |
C7 |
C4 |
C5 |
O10 |
359.9 |
0.3 |
C8 |
C7 |
C4 |
O17 |
180.0 |
179.9 |
C4 |
C7 |
C8 |
C9 |
180.1 |
180.0 |
C4 |
C7 |
C8 |
H8 |
0.1 |
0.1 |
C5 |
C6 |
C1 |
O19 |
179.9 |
179.7 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
C6 |
C5 |
C4 |
C7 |
180.0 |
179.8 |
C4 |
C5 |
C6 |
O10 |
179.9 |
180.5 |
C6 |
C5 |
O10 |
H10 |
359.9 |
90.0 |
O10 |
C5 |
C4 |
C7 |
359.9 |
0.3 |
C4 |
C5 |
O10 |
C6 |
180.1 |
179.5 |
O10 |
C5 |
C6 |
H6 |
0.1 |
359.8 |
H6 |
C6 |
C1 |
O19 |
359.9 |
359.9 |
C1 |
C6 |
H6 |
C5 |
180.0 |
179.8 |
H6 |
C6 |
C5 |
O10 |
0.1 |
359.8 |
C4 |
C7 |
C8 |
O17 |
180.0 |
180.1 |
C9 |
C8 |
C7 |
H8 |
180.0 |
179.9 |
C7 |
C8 |
C9 |
C11 |
161.2 |
180.0 |
C7 |
C8 |
C9 |
H9 |
341.2 |
0.0 |
C4 |
C7 |
O17 |
C8 |
180.0 |
179.9 |
O17 |
C7 |
C8 |
C9 |
0.1 |
359.9 |
O17 |
C7 |
C8 |
H8 |
180.1 |
180.0 |
C9 |
C8 |
C7 |
O17 |
0.1 |
359.9 |
C7 |
C8 |
C9 |
H8 |
180.0 |
180.1 |
C11 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
C8 |
C9 |
C11 |
C12 |
162.3 |
180.0 |
C8 |
C9 |
C11 |
C16 |
342.1 |
360.0 |
H8 |
C8 |
C7 |
O17 |
180.1 |
180.0 |
C7 |
C8 |
H8 |
C9 |
180.0 |
179.9 |
H8 |
C8 |
C9 |
C11 |
341.2 |
360.0 |
H8 |
C8 |
C9 |
H9 |
161.2 |
179.9 |
C11 |
C9 |
C8 |
H8 |
341.2 |
360.0 |
C8 |
C9 |
C11 |
H9 |
180.0 |
180.0 |
C12 |
C11 |
C9 |
C16 |
180.2 |
180.0 |
C9 |
C11 |
C12 |
C13 |
179.8 |
180.0 |
C9 |
C11 |
C12 |
H12 |
359.8 |
0.0 |
C9 |
C11 |
C16 |
C15 |
180.2 |
179.8 |
C9 |
C11 |
C16 |
H16 |
0.2 |
360.0 |
H9 |
C9 |
C8 |
H8 |
161.2 |
179.9 |
C8 |
C9 |
H9 |
C11 |
180.0 |
180.0 |
H9 |
C9 |
C11 |
C12 |
342.2 |
0.0 |
H9 |
C9 |
C11 |
C16 |
162.1 |
180.0 |
C12 |
C11 |
C9 |
H9 |
342.2 |
0.0 |
C9 |
C11 |
C12 |
C16 |
179.8 |
180.0 |
C12 |
C11 |
C16 |
C15 |
0.0 |
359.8 |
C12 |
C11 |
C16 |
H16 |
180.1 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
179.9 |
C11 |
C12 |
C13 |
C14 |
359.9 |
0.0 |
C11 |
C12 |
C13 |
H13 |
179.9 |
180.0 |
C16 |
C11 |
C9 |
H9 |
162.1 |
180.0 |
C9 |
C11 |
C16 |
C12 |
180.2 |
180.0 |
C16 |
C11 |
C12 |
C13 |
360.0 |
360.0 |
C16 |
C11 |
C12 |
H12 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
C11 |
0.1 |
0.5 |
C11 |
C16 |
C15 |
H15 |
180.1 |
180.0 |
C15 |
C16 |
C11 |
H16 |
180.0 |
179.8 |
C13 |
C12 |
C11 |
C16 |
360.0 |
360.0 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.1 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
C12 |
C13 |
C14 |
C15 |
0.2 |
0.2 |
C12 |
C13 |
C14 |
O18 |
180.2 |
180.0 |
H12 |
C12 |
C11 |
C16 |
180.0 |
180.0 |
C11 |
C12 |
H12 |
C13 |
180.0 |
179.9 |
H12 |
C12 |
C13 |
C14 |
179.9 |
180.0 |
H12 |
C12 |
C13 |
H13 |
359.9 |
360.0 |
C14 |
C13 |
C12 |
H12 |
179.9 |
180.0 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
C15 |
C14 |
C13 |
O18 |
180.0 |
180.2 |
C13 |
C14 |
C15 |
C16 |
359.8 |
359.5 |
C13 |
C14 |
C15 |
H15 |
179.8 |
180.0 |
C13 |
C14 |
O18 |
H18 |
180.0 |
89.9 |
H13 |
C13 |
C12 |
H12 |
359.9 |
360.0 |
C12 |
C13 |
H13 |
C14 |
180.0 |
180.0 |
H13 |
C13 |
C14 |
C15 |
180.2 |
180.3 |
H13 |
C13 |
C14 |
O18 |
0.2 |
0.0 |
C11 |
C16 |
C15 |
C14 |
0.1 |
0.5 |
C15 |
C14 |
C13 |
H13 |
180.2 |
180.3 |
C13 |
C14 |
C15 |
O18 |
180.0 |
179.8 |
C15 |
C14 |
O18 |
H18 |
360.0 |
269.7 |
C16 |
C15 |
C14 |
H15 |
180.0 |
179.4 |
C14 |
C15 |
C16 |
H16 |
180.1 |
180.3 |
O18 |
C14 |
C13 |
H13 |
0.2 |
0.0 |
C13 |
C14 |
O18 |
C15 |
180.0 |
180.2 |
O18 |
C14 |
C15 |
C16 |
179.8 |
179.7 |
O18 |
C14 |
C15 |
H15 |
359.8 |
0.3 |
C11 |
C16 |
C15 |
H16 |
180.0 |
180.2 |
C16 |
C15 |
C14 |
O18 |
179.8 |
179.7 |
C14 |
C15 |
C16 |
H15 |
180.0 |
180.6 |
H15 |
C15 |
C14 |
O18 |
359.8 |
0.3 |
C14 |
C15 |
H15 |
C16 |
180.0 |
179.4 |
H15 |
C15 |
C16 |
H16 |
0.1 |
359.8 |
C11 |
C16 |
H16 |
C15 |
180.0 |
179.8 |
H16 |
C16 |
C15 |
H15 |
0.1 |
359.8 |