Atom Nomenclature for HC6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for HC6

Atom Name (V3) Atom Name (V2)
CAC CAC
NAA NAA
CBA CBA
CBB CBB
CAB CAB
CAF CAF
OAE OAE
CAD CAD
OBC OBC
CAG CAG
CAL CAL
CAK CAK
CAH CAH
CAI CAI
CAJ CAJ
CAM CAM
CAR CAR
CAQ CAQ
CAN CAN
CAO CAO
CAP CAP
CAS CAS
OBD OBD
CAX CAX
OAT OAT
CAU CAU
CAV CAV
NAW NAW
CAZ CAZ
CAY CAY
HAC HAC
HACA HACA
HBA HBA
HBAA HBAA
HBAB HBAB
HBB HBB
HBBA HBBA
HBBB HBBB
HAB HAB
HABA HABA
HAF HAF
HAFA HAFA
HAL HAL
HAK HAK
HAH HAH
HAI HAI
HAR HAR
HAQ HAQ
HAN HAN
HAO HAO
HAX HAX
HAXA HAXA
HAU HAU
HAUA HAUA
HAV HAV
HAVA HAVA
HAZ HAZ
HAZA HAZA
HAZB HAZB
HAY HAY
HAYA HAYA
HAYB HAYB
H33 H33
H34 H34