PDB Chemical Component HC4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HC4
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.250 |
1.216 |
| C1 |
O2 |
1.789 |
1.349 |
| C1 |
C2 |
1.428 |
1.417 |
| O2 |
HO2 |
0.950 |
0.967 |
| C2 |
C3 |
1.345 |
1.351 |
| C2 |
H2 |
1.104 |
1.081 |
| C3 |
C1' |
1.419 |
1.468 |
| C3 |
H3 |
1.103 |
1.080 |
| C1' |
C2' |
1.408 |
1.399 |
| C1' |
C6' |
1.393 |
1.399 |
| C2' |
C3' |
1.382 |
1.376 |
| C2' |
H2' |
1.103 |
1.080 |
| C3' |
C4' |
1.392 |
1.390 |
| C3' |
H3' |
1.102 |
1.080 |
| C4' |
C5' |
1.391 |
1.390 |
| C4' |
O4' |
1.317 |
1.357 |
| C5' |
C6' |
1.372 |
1.377 |
| C5' |
H5' |
1.103 |
1.080 |
| C6' |
H6' |
1.103 |
1.079 |
| O4' |
HO4' |
0.950 |
0.966 |
Bond Angles for HC4
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
O2 |
119.5 |
120.0 |
| O1 |
C1 |
C2 |
127.6 |
120.0 |
| O2 |
C1 |
C2 |
112.8 |
120.0 |
| C1 |
O2 |
HO2 |
119.5 |
106.8 |
| C1 |
C2 |
C3 |
120.2 |
120.0 |
| C1 |
C2 |
H2 |
122.9 |
120.0 |
| C3 |
C2 |
H2 |
116.9 |
119.9 |
| C2 |
C3 |
C1' |
126.8 |
120.0 |
| C2 |
C3 |
H3 |
113.5 |
120.0 |
| C1' |
C3 |
H3 |
119.7 |
120.0 |
| C3 |
C1' |
C2' |
120.4 |
120.1 |
| C3 |
C1' |
C6' |
122.3 |
120.1 |
| C2' |
C1' |
C6' |
117.2 |
119.7 |
| C1' |
C2' |
C3' |
120.6 |
119.9 |
| C1' |
C2' |
H2' |
120.6 |
120.1 |
| C1' |
C6' |
C5' |
121.8 |
119.9 |
| C1' |
C6' |
H6' |
119.9 |
120.1 |
| C3' |
C2' |
H2' |
118.7 |
120.0 |
| C2' |
C3' |
C4' |
121.0 |
120.1 |
| C2' |
C3' |
H3' |
119.1 |
120.0 |
| C4' |
C3' |
H3' |
119.9 |
119.9 |
| C3' |
C4' |
C5' |
118.2 |
120.2 |
| C3' |
C4' |
O4' |
120.4 |
119.9 |
| C5' |
C4' |
O4' |
121.4 |
119.9 |
| C4' |
C5' |
C6' |
120.7 |
120.1 |
| C4' |
C5' |
H5' |
120.4 |
120.0 |
| C4' |
O4' |
HO4' |
120.4 |
106.9 |
| C6' |
C5' |
H5' |
118.9 |
119.9 |
| C5' |
C6' |
H6' |
118.3 |
120.0 |
Torsion Angles for HC4
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C1 |
O1 |
C2 |
175.7 |
180.0 |
| O1 |
C1 |
O2 |
HO2 |
180.0 |
360.0 |
| O1 |
C1 |
C2 |
C3 |
349.5 |
360.0 |
| O1 |
C1 |
C2 |
H2 |
169.6 |
180.0 |
| O1 |
C1 |
O2 |
C2 |
183.7 |
180.0 |
| O2 |
C1 |
C2 |
C3 |
173.6 |
180.0 |
| O2 |
C1 |
C2 |
H2 |
353.7 |
0.0 |
| O1 |
C1 |
C2 |
O2 |
175.9 |
180.0 |
| C2 |
C1 |
O2 |
HO2 |
356.3 |
179.9 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C1' |
171.1 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
351.1 |
0.0 |
| HO2 |
O2 |
C1 |
C2 |
356.3 |
179.9 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C1' |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C1' |
C2' |
174.5 |
180.0 |
| C2 |
C3 |
C1' |
C6' |
349.9 |
359.7 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C1' |
351.1 |
0.0 |
| H2 |
C2 |
C3 |
H3 |
171.0 |
180.0 |
| C1' |
C3 |
C2 |
H2 |
351.1 |
0.0 |
| C2 |
C3 |
C1' |
H3 |
180.0 |
180.0 |
| C2' |
C1' |
C3 |
C6' |
184.6 |
180.3 |
| C3 |
C1' |
C2' |
C3' |
180.9 |
180.0 |
| C3 |
C1' |
C2' |
H2' |
1.0 |
360.0 |
| C3 |
C1' |
C6' |
C5' |
180.0 |
179.7 |
| C3 |
C1' |
C6' |
H6' |
0.0 |
0.3 |
| H3 |
C3 |
C2 |
H2 |
171.0 |
180.0 |
| C2 |
C3 |
H3 |
C1' |
180.0 |
180.0 |
| H3 |
C3 |
C1' |
C2' |
354.5 |
0.0 |
| H3 |
C3 |
C1' |
C6' |
169.9 |
179.7 |
| C2' |
C1' |
C3 |
H3 |
354.5 |
0.0 |
| C3 |
C1' |
C2' |
C6' |
175.7 |
179.7 |
| C2' |
C1' |
C6' |
C5' |
355.6 |
359.5 |
| C2' |
C1' |
C6' |
H6' |
175.6 |
180.0 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
359.2 |
0.0 |
| C1' |
C2' |
C3' |
H3' |
179.2 |
180.0 |
| C6' |
C1' |
C3 |
H3 |
169.9 |
179.7 |
| C3 |
C1' |
C6' |
C2' |
184.4 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
5.3 |
0.2 |
| C6' |
C1' |
C2' |
H2' |
185.3 |
180.3 |
| C4' |
C5' |
C6' |
C1' |
359.0 |
0.5 |
| C1' |
C6' |
C5' |
H5' |
179.0 |
180.3 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.5 |
| C3' |
C2' |
C1' |
C6' |
5.3 |
0.2 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
180.1 |
| C2' |
C3' |
C4' |
C5' |
355.4 |
360.0 |
| C2' |
C3' |
C4' |
O4' |
173.7 |
180.0 |
| H2' |
C2' |
C1' |
C6' |
185.3 |
180.3 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
C4' |
179.2 |
180.0 |
| H2' |
C2' |
C3' |
H3' |
359.2 |
359.9 |
| C4' |
C3' |
C2' |
H2' |
179.2 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
179.9 |
| C5' |
C4' |
C3' |
O4' |
181.7 |
179.9 |
| C3' |
C4' |
C5' |
C6' |
5.6 |
359.8 |
| C3' |
C4' |
C5' |
H5' |
185.5 |
180.0 |
| C3' |
C4' |
O4' |
HO4' |
180.0 |
90.0 |
| H3' |
C3' |
C2' |
H2' |
359.2 |
359.9 |
| C2' |
C3' |
H3' |
C4' |
180.0 |
180.1 |
| H3' |
C3' |
C4' |
C5' |
175.4 |
180.0 |
| H3' |
C3' |
C4' |
O4' |
353.7 |
0.1 |
| C1' |
C6' |
C5' |
C4' |
359.0 |
0.5 |
| C5' |
C4' |
C3' |
H3' |
175.4 |
180.0 |
| C3' |
C4' |
C5' |
O4' |
178.3 |
180.1 |
| C5' |
C4' |
O4' |
HO4' |
358.3 |
270.0 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
179.7 |
| C4' |
C5' |
C6' |
H6' |
179.0 |
180.0 |
| O4' |
C4' |
C3' |
H3' |
353.7 |
0.1 |
| C3' |
C4' |
O4' |
C5' |
181.7 |
179.9 |
| O4' |
C4' |
C5' |
C6' |
187.3 |
179.7 |
| O4' |
C4' |
C5' |
H5' |
7.2 |
359.9 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.5 |
| C6' |
C5' |
C4' |
O4' |
187.3 |
179.7 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.3 |
| H5' |
C5' |
C4' |
O4' |
7.2 |
359.9 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
179.7 |
| H5' |
C5' |
C6' |
H6' |
359.0 |
359.7 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.5 |
| H6' |
C6' |
C5' |
H5' |
359.0 |
359.7 |