Atom Nomenclature for HC0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for HC0

Atom Name (V3) Atom Name (V2)
FE1 FE1
FE2 FE2
S1 S1
S2 S2
O1 O1
O8 O8
O3 O3
O4 O4
O5 O5
O6 O6
O7 O7
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
HO11 HO11
HO12 HO12
H33 H33
H44 H44
H66 H66
H77 H77
H88 H88