PDB Chemical Component HBQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HBQ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.227	1.233
C1	N2	1.344	1.371
C1	C2	1.539	1.520
C2	C9	1.533	1.531
C2	N1	1.491	1.476
C2	H2	1.100	1.097
C3	C4	1.424	1.402
C3	N1	1.468	1.435
C3	C8	1.398	1.405
C4	N2	1.416	1.399
C4	C5	1.417	1.402
C5	C6	1.403	1.390
C5	H5	1.080	1.087
C6	C7	1.385	1.390
C6	H6	1.080	1.085
C7	C8	1.360	1.399
C7	F1	1.329	1.340
C8	H8	1.080	1.084
C9	C10	1.502	1.507
C9	H91	1.100	1.085
C9	H92	1.100	1.084
C10	H101	1.100	1.095
C10	H102	1.101	1.095
C10	H103	1.100	1.094
C11	N1	1.415	1.413
C11	O3	1.230	1.228
C11	O2	1.327	1.374
C12	O2	1.462	1.432
C12	C14	1.440	1.522
C12	C13	1.554	1.520
C12	H12	1.100	1.095
C13	H131	1.100	1.095
C13	H132	1.100	1.095
C13	H133	1.100	1.096
C14	H141	1.100	1.094
C14	H142	1.100	1.095
C14	H143	1.100	1.096
N2	HN2	0.999	1.016

Bond Angles for HBQ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N2	C1	O1	123.4	122.3
C2	C1	O1	121.7	121.0
C2	C1	N2	114.8	116.2
C1	N2	C4	125.3	123.4
C1	N2	HN2	117.4	118.4
C1	C2	C9	111.1	108.8
C1	C2	N1	111.3	115.0
C1	C2	H2	108.0	105.5
C9	C2	N1	112.0	110.5
C9	C2	H2	107.1	108.4
C2	C9	C10	114.1	110.7
C2	C9	H91	108.0	107.5
C2	C9	H92	106.9	107.5
N1	C2	H2	107.0	108.3
C2	N1	C3	114.1	117.0
C2	N1	C11	118.7	120.3
C4	C3	N1	116.6	119.3
C4	C3	C8	119.1	117.7
C3	C4	N2	118.7	120.9
C3	C4	C5	120.5	121.2
C8	C3	N1	124.3	123.1
C3	N1	C11	126.9	122.6
C3	C8	C7	118.7	121.1
C3	C8	H8	120.7	122.4
C5	C4	N2	120.9	117.8
C4	N2	HN2	117.4	118.2
C4	C5	C6	118.9	120.1
C4	C5	H5	120.6	120.7
C6	C5	H5	120.5	119.2
C5	C6	C7	118.3	119.6
C5	C6	H6	120.9	120.4
C7	C6	H6	120.8	120.0
C6	C7	C8	124.5	120.3
C6	C7	F1	118.9	119.9
C8	C7	F1	116.6	119.7
C7	C8	H8	120.6	116.4
C10	C9	H91	108.0	111.0
C10	C9	H92	106.9	111.0
C9	C10	H101	109.5	111.6
C9	C10	H102	109.5	111.6
C9	C10	H103	109.5	109.2
H91	C9	H92	113.2	108.9
H101	C10	H102	109.5	107.9
H101	C10	H103	109.4	108.3
H102	C10	H103	109.5	108.3
N1	C11	O3	119.7	126.0
N1	C11	O2	114.1	112.2
O2	C11	O3	126.1	121.8
C11	O2	C12	117.1	116.4
C14	C12	O2	109.8	109.2
C13	C12	O2	101.9	109.2
O2	C12	H12	112.7	107.4
C13	C12	C14	105.0	111.9
C14	C12	H12	109.9	109.5
C12	C14	H141	109.5	111.2
C12	C14	H142	109.5	110.4
C12	C14	H143	109.5	111.0
C13	C12	H12	117.0	109.5
C12	C13	H131	109.5	111.3
C12	C13	H132	109.5	110.4
C12	C13	H133	109.4	111.1
H131	C13	H132	109.4	108.6
H131	C13	H133	109.5	108.7
H132	C13	H133	109.5	106.7
H141	C14	H142	109.5	108.7
H141	C14	H143	109.5	108.6
H142	C14	H143	109.5	106.7

Torsion Angles for HBQ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	N2	180.4	171.6
O1	C1	N2	C4	181.3	180.9
O1	C1	N2	HN2	1.3	360.0
O1	C1	C2	C9	270.6	284.2
O1	C1	C2	N1	145.0	159.7
O1	C1	C2	H2	27.8	40.4
C2	C1	N2	O1	179.6	188.1
N2	C1	C2	C9	91.0	96.3
N2	C1	C2	N1	325.3	331.8
N2	C1	C2	H2	208.2	212.4
C3	C4	N2	C1	18.3	6.2
C5	C4	N2	C1	198.1	183.9
C4	N2	C1	HN2	180.0	180.9
N2	C1	C2	O1	180.4	172.1
C2	C1	N2	C4	0.9	8.9
C2	C1	N2	HN2	180.9	188.0
C9	C2	C1	N1	125.6	124.5
C9	C2	C1	H2	242.8	243.9
C1	C2	C9	C10	185.0	61.4
C1	C2	C9	H91	305.1	300.0
C1	C2	C9	H92	67.1	182.8
N1	C2	C1	H2	117.1	119.3
C1	C2	N1	C3	50.6	33.5
C1	C2	N1	C11	236.9	211.6
C9	C2	C1	O1	270.6	284.2
C9	C2	C1	N2	91.0	96.3
C1	C2	C9	N1	234.8	232.8
C1	C2	C9	H2	117.7	114.3
N1	C2	C9	H2	243.0	241.4
C9	C2	N1	C3	285.4	269.8
C9	C2	N1	C11	111.8	87.9
C10	C9	C2	H91	240.0	121.4
C10	C9	C2	H92	117.9	238.6
C2	C9	C10	H101	211.1	299.6
C2	C9	C10	H102	331.1	60.4
C2	C9	C10	H103	91.1	180.1
H91	C9	C2	H92	238.0	117.2
N1	C2	C1	O1	145.0	159.7
N1	C2	C1	N2	325.3	331.8
C1	C2	N1	C9	125.1	123.6
C1	C2	N1	H2	242.3	242.3
C9	C2	N1	H2	117.1	118.6
N1	C2	C9	C10	310.2	188.6
N1	C2	C9	H91	70.3	67.2
N1	C2	C9	H92	192.3	310.0
C4	C3	N1	C2	326.7	340.5
C8	C3	N1	C2	145.7	160.3
C3	N1	C2	C11	173.7	181.9
C2	N1	C11	O3	355.1	180.0
C2	N1	C11	O2	177.2	1.2
H2	C2	C1	O1	27.8	40.4
H2	C2	C1	N2	208.2	212.4
C1	C2	H2	C9	240.2	243.6
C1	C2	H2	N1	119.9	123.7
C9	C2	H2	N1	239.7	240.1
H2	C2	C9	C10	67.3	307.2
H2	C2	C9	H91	187.3	185.7
H2	C2	C9	H92	309.4	68.6
H2	C2	N1	C3	168.3	151.2
H2	C2	N1	C11	354.6	329.3
C1	N2	C4	C3	18.3	6.2
C2	N1	C3	C4	326.7	340.5
C8	C3	C4	N1	181.0	180.2
C4	C3	N1	C11	139.8	162.4
C4	C3	C8	C7	359.9	358.8
C4	C3	C8	H8	180.0	175.9
C5	C4	C3	N2	180.2	182.3
C3	C4	N2	HN2	198.3	187.1
C3	C4	C5	C6	359.8	358.8
C3	C4	C5	H5	179.8	178.9
C3	N1	C2	H2	168.3	151.2
C2	N1	C3	C11	187.0	178.0
C4	C3	N1	C8	181.0	180.2
N1	C3	C4	N2	359.1	359.2
N1	C3	C4	C5	179.3	181.5
N1	C3	C8	C7	181.0	179.0
N1	C3	C8	H8	1.0	356.1
C3	N1	C11	O3	182.4	358.0
C3	N1	C11	O2	4.4	179.2
C2	N1	C3	C8	145.7	160.3
C4	C3	C8	N1	179.0	179.8
C8	C3	C4	N2	180.0	179.3
C8	C3	C4	C5	0.2	1.7
C8	C3	N1	C11	318.7	342.3
C6	C7	C8	C3	359.8	0.1
C3	C8	C7	F1	177.6	179.7
C7	C8	C3	H8	180.0	182.9
C4	N2	C1	O1	181.3	180.9
C1	N2	C4	HN2	180.0	179.1
N2	C4	C3	N1	359.1	359.2
N2	C4	C3	C8	180.0	179.3
C3	C4	N2	C5	180.2	182.3
N2	C4	C5	C6	180.0	181.1
N2	C4	C5	H5	0.0	1.2
C1	N2	C4	C5	198.1	183.9
C5	C4	C3	N1	179.3	181.5
C5	C4	C3	C8	0.2	1.7
C3	C4	C5	N2	179.8	177.7
C5	C4	N2	HN2	18.1	4.8
C6	C5	C4	H5	180.0	179.9
C4	C5	C6	C7	359.9	0.0
C4	C5	C6	H6	179.9	180.2
C6	C5	C4	N2	180.0	181.1
C4	C5	C6	H5	180.0	180.1
C7	C6	C5	H6	180.0	179.8
C5	C6	C7	C8	0.2	0.5
C5	C6	C7	F1	182.5	180.9
H5	C5	C4	N2	0.0	1.2
C4	C5	H5	C6	180.0	179.9
H5	C5	C6	C7	179.9	179.9
H5	C5	C6	H6	360.0	0.1
C3	C8	C7	C6	359.8	0.1
C7	C6	C5	H5	179.9	179.9
C5	C6	C7	H6	180.0	180.2
C8	C7	C6	F1	177.7	179.6
C6	C7	C8	H8	179.8	182.8
H6	C6	C5	H5	360.0	0.1
C5	C6	H6	C7	180.0	179.8
H6	C6	C7	C8	180.2	180.3
H6	C6	C7	F1	2.5	0.8
C7	C8	C3	N1	181.0	179.0
C3	C8	C7	H8	180.0	177.3
C8	C7	C6	H6	180.2	180.3
C6	C7	C8	F1	182.2	180.4
F1	C7	C6	H6	2.5	0.8
C6	C7	F1	C8	177.9	179.6
F1	C7	C8	H8	357.6	2.4
H8	C8	C3	N1	1.0	356.1
C3	C8	H8	C7	180.0	182.8
H8	C8	C7	F1	357.6	2.4
C10	C9	C2	N1	310.2	188.6
C10	C9	C2	H2	67.3	307.2
C2	C9	C10	H91	120.0	240.7
C2	C9	C10	H92	242.0	119.4
H91	C9	C10	H92	122.0	238.7
H101	C10	C9	H102	240.0	239.3
H101	C10	C9	H103	120.0	119.6
H102	C10	C9	H103	240.0	240.3
H91	C9	C2	N1	70.3	67.2
H91	C9	C2	H2	187.3	185.7
C2	C9	H91	C10	236.1	121.2
C2	C9	H91	H92	118.1	243.7
C10	C9	H91	H92	241.9	122.5
H91	C9	C10	H101	91.1	59.0
H91	C9	C10	H102	211.1	179.7
H91	C9	C10	H103	331.1	299.4
H92	C9	C2	N1	192.3	310.0
H92	C9	C2	H2	309.4	68.6
C2	C9	H92	C10	122.6	238.8
C2	C9	H92	H91	241.3	116.2
C10	C9	H92	H91	118.7	237.5
H92	C9	C10	H101	329.1	180.3
H92	C9	C10	H102	89.1	301.0
H92	C9	C10	H103	209.1	60.7
H101	C10	C9	H91	91.1	59.0
H101	C10	C9	H92	329.1	180.3
C9	C10	H101	H102	120.0	122.9
C9	C10	H101	H103	240.0	239.9
H102	C10	H101	H103	120.0	117.0
H102	C10	C9	H91	211.1	179.7
H102	C10	C9	H92	89.1	301.0
C9	C10	H102	H101	240.0	237.1
C9	C10	H102	H103	120.0	120.2
H101	C10	H102	H103	240.0	243.0
H103	C10	C9	H91	331.1	299.4
H103	C10	C9	H92	209.1	60.7
C9	C10	H103	H101	120.0	121.6
C9	C10	H103	H102	240.0	238.3
H101	C10	H103	H102	120.0	116.7
C11	N1	C2	H2	354.6	329.3
C2	N1	C11	C3	172.8	182.0
O2	C11	N1	O3	182.1	181.2
N1	C11	O2	C12	179.0	208.9
N1	C11	O3	O2	182.3	181.3
O3	C11	O2	C12	1.2	30.1
N1	C11	O2	O3	177.8	178.8
C14	C12	O2	C11	97.9	181.3
C13	C12	O2	C11	208.8	58.7
C11	O2	C12	H12	335.0	299.9
C12	O2	C11	O3	1.2	30.1
C13	C12	O2	C14	110.9	237.3
C14	C12	O2	H12	122.9	241.4
O2	C12	C14	H141	141.0	178.4
O2	C12	C14	H142	261.0	57.7
O2	C12	C14	H143	21.0	299.6
C13	C12	O2	H12	233.8	118.7
O2	C12	C13	H131	164.3	181.7
O2	C12	C13	H132	284.3	302.3
O2	C12	C13	H133	44.3	60.4
C11	O2	C12	C14	97.9	181.3
C13	C12	C14	O2	251.2	121.0
O2	C12	C14	H12	235.5	117.3
C13	C12	C14	H12	126.7	238.4
C14	C12	C13	H131	278.8	60.6
C14	C12	C13	H132	38.8	181.3
C14	C12	C13	H133	158.8	299.4
H141	C14	C12	H142	240.0	120.7
H141	C14	C12	H143	120.0	238.9
H142	C14	C12	H143	240.0	118.1
C11	O2	C12	C13	208.8	58.7
C14	C12	C13	O2	114.5	239.0
O2	C12	C13	H12	123.3	242.6
C14	C12	C13	H12	237.8	121.6
C13	C12	C14	H141	32.2	299.5
C13	C12	C14	H142	152.2	178.7
C13	C12	C14	H143	272.2	60.6
H131	C13	C12	H132	240.0	239.4
H131	C13	C12	H133	120.0	121.2
H132	C13	C12	H133	240.0	241.8
C14	C12	H12	O2	237.1	118.4
C13	C12	H12	O2	117.6	241.5
C13	C12	H12	C14	240.4	123.1
H12	C12	C14	H141	265.6	61.1
H12	C12	C14	H142	25.6	300.4
H12	C12	C14	H143	145.5	182.2
H12	C12	C13	H131	41.0	299.0
H12	C12	C13	H132	161.0	59.7
H12	C12	C13	H133	281.0	177.8
H131	C13	C12	O2	164.3	181.7
H131	C13	C12	C14	278.8	60.6
H131	C13	C12	H12	41.0	299.0
C12	C13	H131	H132	120.0	121.7
C12	C13	H131	H133	240.0	237.3
H132	C13	H131	H133	120.0	115.7
H132	C13	C12	O2	284.3	302.3
H132	C13	C12	C14	38.8	181.3
H132	C13	C12	H12	161.0	59.7
C12	C13	H132	H131	240.0	237.8
C12	C13	H132	H133	120.0	120.8
H131	C13	H132	H133	240.0	243.0
H133	C13	C12	O2	44.3	60.4
H133	C13	C12	C14	158.8	299.4
H133	C13	C12	H12	281.0	177.8
C12	C13	H133	H131	120.0	122.7
C12	C13	H133	H132	240.0	239.6
H131	C13	H133	H132	120.0	116.9
H141	C14	C12	O2	141.0	178.4
H141	C14	C12	H12	265.6	61.1
C12	C14	H141	H142	120.0	238.3
C12	C14	H141	H143	240.0	122.5
H142	C14	H141	H143	120.0	244.3
H142	C14	C12	O2	261.0	57.7
H142	C14	C12	H12	25.6	300.4
C12	C14	H142	H141	240.0	122.3
C12	C14	H142	H143	120.0	239.2
H141	C14	H142	H143	240.0	117.0
H143	C14	C12	O2	21.0	299.6
H143	C14	C12	H12	145.5	182.2
C12	C14	H143	H141	120.0	237.3
C12	C14	H143	H142	240.0	120.3
H141	C14	H143	H142	120.0	243.0
HN2	N2	C1	O1	1.3	360.0
C1	N2	HN2	C4	180.0	180.8