PDB Chemical Component HBI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HBI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.305 |
1.319 |
| N1 |
C8A |
1.330 |
1.330 |
| N2 |
C2 |
1.389 |
1.369 |
| N2 |
HN21 |
1.021 |
0.970 |
| N2 |
HN22 |
1.020 |
0.969 |
| C2 |
N3 |
1.312 |
1.360 |
| N3 |
C4 |
1.330 |
1.351 |
| N3 |
H3 |
1.021 |
0.970 |
| C4 |
O4 |
1.376 |
1.219 |
| C4 |
C4A |
1.418 |
1.409 |
| C4A |
C8A |
1.437 |
1.400 |
| C4A |
N5 |
1.436 |
1.362 |
| C8A |
N8 |
1.458 |
1.383 |
| N8 |
C7 |
1.505 |
1.473 |
| N8 |
H8 |
1.020 |
0.970 |
| C7 |
C6 |
1.559 |
1.508 |
| C7 |
H71 |
1.114 |
1.090 |
| C7 |
H72 |
1.115 |
1.090 |
| C6 |
N5 |
1.288 |
1.287 |
| C6 |
C9 |
1.547 |
1.507 |
| C9 |
O9 |
1.439 |
1.428 |
| C9 |
C10 |
1.564 |
1.529 |
| C9 |
H9 |
1.114 |
1.090 |
| O9 |
HO9 |
0.950 |
0.967 |
| C10 |
O10 |
1.421 |
1.429 |
| C10 |
C11 |
1.544 |
1.530 |
| C10 |
H10 |
1.116 |
1.089 |
| O10 |
HO1 |
0.950 |
0.967 |
| C11 |
H111 |
1.115 |
1.090 |
| C11 |
H112 |
1.115 |
1.090 |
| C11 |
H113 |
1.115 |
1.090 |
Bond Angles for HBI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C8A |
117.6 |
120.9 |
| N1 |
C2 |
N2 |
115.5 |
119.1 |
| N1 |
C2 |
N3 |
127.7 |
121.8 |
| N1 |
C8A |
C4A |
120.7 |
120.1 |
| N1 |
C8A |
N8 |
119.8 |
121.7 |
| C2 |
N2 |
HN21 |
115.5 |
120.0 |
| C2 |
N2 |
HN22 |
110.0 |
120.1 |
| N2 |
C2 |
N3 |
116.7 |
119.1 |
| HN21 |
N2 |
HN22 |
110.0 |
119.9 |
| C2 |
N3 |
C4 |
117.4 |
120.5 |
| C2 |
N3 |
H3 |
120.7 |
119.7 |
| C4 |
N3 |
H3 |
121.9 |
119.8 |
| N3 |
C4 |
O4 |
118.5 |
120.9 |
| N3 |
C4 |
C4A |
121.2 |
118.3 |
| O4 |
C4 |
C4A |
120.3 |
120.8 |
| C4 |
C4A |
C8A |
115.4 |
118.4 |
| C4 |
C4A |
N5 |
122.9 |
121.4 |
| C8A |
C4A |
N5 |
121.7 |
120.1 |
| C4A |
C8A |
N8 |
119.5 |
118.2 |
| C4A |
N5 |
C6 |
123.1 |
121.8 |
| C8A |
N8 |
C7 |
116.5 |
117.2 |
| C8A |
N8 |
H8 |
109.6 |
121.4 |
| C7 |
N8 |
H8 |
109.7 |
121.4 |
| N8 |
C7 |
C6 |
117.1 |
109.0 |
| N8 |
C7 |
H71 |
109.4 |
109.5 |
| N8 |
C7 |
H72 |
109.5 |
109.6 |
| C6 |
C7 |
H71 |
109.4 |
109.9 |
| C6 |
C7 |
H72 |
109.4 |
109.3 |
| C7 |
C6 |
N5 |
119.7 |
121.4 |
| C7 |
C6 |
C9 |
121.1 |
119.3 |
| H71 |
C7 |
H72 |
100.8 |
109.5 |
| N5 |
C6 |
C9 |
119.1 |
119.3 |
| C6 |
C9 |
O9 |
110.2 |
109.5 |
| C6 |
C9 |
C10 |
114.3 |
109.4 |
| C6 |
C9 |
H9 |
105.2 |
109.5 |
| O9 |
C9 |
C10 |
108.4 |
109.5 |
| O9 |
C9 |
H9 |
111.5 |
109.4 |
| C9 |
O9 |
HO9 |
110.2 |
106.8 |
| C10 |
C9 |
H9 |
107.1 |
109.5 |
| C9 |
C10 |
O10 |
109.9 |
109.5 |
| C9 |
C10 |
C11 |
112.3 |
109.5 |
| C9 |
C10 |
H10 |
108.0 |
109.5 |
| O10 |
C10 |
C11 |
111.6 |
109.4 |
| O10 |
C10 |
H10 |
108.7 |
109.4 |
| C10 |
O10 |
HO1 |
109.9 |
106.8 |
| C11 |
C10 |
H10 |
106.2 |
109.5 |
| C10 |
C11 |
H111 |
112.3 |
109.5 |
| C10 |
C11 |
H112 |
111.2 |
109.5 |
| C10 |
C11 |
H113 |
111.1 |
109.4 |
| H111 |
C11 |
H112 |
111.2 |
109.5 |
| H111 |
C11 |
H113 |
111.1 |
109.5 |
| H112 |
C11 |
H113 |
99.2 |
109.5 |
Torsion Angles for HBI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C8A |
C4A |
359.5 |
359.6 |
| C2 |
N1 |
C8A |
N8 |
180.1 |
179.4 |
| N1 |
C2 |
N2 |
HN21 |
180.0 |
360.0 |
| N1 |
C2 |
N2 |
HN22 |
54.7 |
179.9 |
| N2 |
C2 |
N1 |
N3 |
182.5 |
180.1 |
| N1 |
C2 |
N3 |
C4 |
1.2 |
0.4 |
| N1 |
C2 |
N3 |
H3 |
181.2 |
180.2 |
| C8A |
N1 |
C2 |
N2 |
182.3 |
180.0 |
| C8A |
N1 |
C2 |
N3 |
359.8 |
359.9 |
| C4 |
C4A |
C8A |
N1 |
0.2 |
0.6 |
| N1 |
C8A |
C4A |
N5 |
181.5 |
180.8 |
| C4A |
C8A |
N1 |
N8 |
179.4 |
180.2 |
| N1 |
C8A |
N8 |
C7 |
168.4 |
151.2 |
| N1 |
C8A |
N8 |
H8 |
43.1 |
331.4 |
| N2 |
C2 |
N1 |
C8A |
182.3 |
180.0 |
| N1 |
C2 |
N2 |
N3 |
177.8 |
179.9 |
| HN21 |
N2 |
C2 |
HN22 |
125.2 |
180.0 |
| N2 |
C2 |
N3 |
C4 |
178.7 |
180.3 |
| N2 |
C2 |
N3 |
H3 |
358.6 |
0.1 |
| C2 |
N2 |
HN21 |
HN22 |
234.7 |
180.0 |
| HN21 |
N2 |
C2 |
N3 |
2.2 |
180.1 |
| C2 |
N2 |
HN22 |
HN21 |
128.3 |
180.0 |
| HN22 |
N2 |
C2 |
N3 |
237.0 |
0.0 |
| N3 |
C2 |
N1 |
C8A |
359.8 |
359.9 |
| N1 |
C2 |
N3 |
N2 |
182.5 |
180.1 |
| N3 |
C2 |
N2 |
HN21 |
2.2 |
180.1 |
| N3 |
C2 |
N2 |
HN22 |
237.0 |
0.0 |
| C4 |
N3 |
C2 |
H3 |
180.0 |
180.2 |
| C2 |
N3 |
C4 |
O4 |
178.8 |
179.9 |
| C2 |
N3 |
C4 |
C4A |
358.5 |
359.8 |
| C2 |
N3 |
C4 |
H3 |
180.0 |
179.8 |
| O4 |
C4 |
N3 |
C4A |
180.3 |
180.1 |
| N3 |
C4 |
C4A |
C8A |
0.8 |
359.7 |
| N3 |
C4 |
C4A |
N5 |
179.5 |
179.5 |
| C2 |
N3 |
H3 |
C4 |
180.0 |
180.2 |
| H3 |
N3 |
C4 |
O4 |
358.8 |
0.1 |
| H3 |
N3 |
C4 |
C4A |
178.6 |
180.0 |
| O4 |
C4 |
N3 |
H3 |
358.8 |
0.1 |
| N3 |
C4 |
O4 |
C4A |
179.7 |
179.9 |
| O4 |
C4 |
C4A |
C8A |
180.5 |
179.6 |
| O4 |
C4 |
C4A |
N5 |
359.2 |
359.4 |
| N1 |
C8A |
C4A |
C4 |
0.2 |
0.6 |
| C4A |
C4 |
N3 |
H3 |
178.6 |
180.0 |
| N3 |
C4 |
C4A |
O4 |
180.3 |
180.1 |
| C8A |
C4A |
C4 |
N5 |
181.4 |
180.2 |
| C4 |
C4A |
C8A |
N8 |
179.6 |
180.8 |
| C4 |
C4A |
N5 |
C6 |
183.2 |
193.2 |
| N1 |
C8A |
C4A |
N8 |
180.6 |
179.8 |
| C4 |
C4A |
C8A |
N5 |
178.7 |
179.8 |
| C8A |
C4A |
N5 |
C6 |
1.8 |
13.0 |
| C4A |
C8A |
N8 |
C7 |
349.0 |
331.0 |
| C4A |
C8A |
N8 |
H8 |
223.7 |
151.2 |
| C4 |
C4A |
N5 |
C8A |
181.4 |
180.2 |
| N5 |
C4A |
C8A |
N8 |
1.0 |
1.0 |
| C7 |
C6 |
N5 |
C4A |
5.8 |
2.1 |
| C4A |
N5 |
C6 |
C9 |
181.4 |
181.7 |
| N1 |
C8A |
N8 |
C4A |
179.4 |
180.2 |
| N8 |
C8A |
C4A |
N5 |
1.0 |
1.0 |
| C7 |
N8 |
C8A |
H8 |
125.3 |
179.8 |
| C8A |
N8 |
C7 |
C6 |
17.9 |
40.0 |
| C8A |
N8 |
C7 |
H71 |
143.1 |
279.8 |
| C8A |
N8 |
C7 |
H72 |
252.6 |
159.6 |
| C8A |
N8 |
C7 |
H8 |
234.8 |
180.2 |
| C6 |
C7 |
N8 |
H71 |
234.8 |
120.3 |
| C6 |
C7 |
N8 |
H72 |
125.2 |
240.5 |
| N8 |
C7 |
C6 |
N5 |
344.2 |
332.5 |
| N8 |
C7 |
C6 |
C9 |
168.7 |
152.8 |
| H71 |
C7 |
N8 |
H72 |
250.4 |
120.2 |
| C8A |
N8 |
H8 |
C7 |
129.1 |
179.8 |
| H8 |
N8 |
C7 |
C6 |
143.1 |
219.9 |
| H8 |
N8 |
C7 |
H71 |
268.3 |
99.6 |
| H8 |
N8 |
C7 |
H72 |
17.9 |
339.4 |
| C4A |
N5 |
C6 |
C7 |
5.8 |
2.1 |
| C6 |
C7 |
N8 |
H8 |
143.1 |
219.9 |
| N8 |
C7 |
C6 |
H71 |
125.2 |
240.0 |
| N8 |
C7 |
C6 |
H72 |
234.7 |
119.8 |
| H71 |
C7 |
C6 |
H72 |
109.5 |
239.8 |
| N5 |
C6 |
C7 |
C9 |
175.4 |
179.7 |
| C7 |
C6 |
C9 |
O9 |
119.6 |
59.7 |
| C7 |
C6 |
C9 |
C10 |
241.9 |
179.7 |
| C7 |
C6 |
C9 |
H9 |
359.2 |
299.7 |
| H71 |
C7 |
N8 |
H8 |
268.3 |
99.6 |
| N8 |
C7 |
H71 |
C6 |
230.4 |
119.7 |
| N8 |
C7 |
H71 |
H72 |
115.3 |
239.8 |
| C6 |
C7 |
H71 |
H72 |
244.8 |
120.0 |
| H71 |
C7 |
C6 |
N5 |
218.9 |
92.6 |
| H71 |
C7 |
C6 |
C9 |
43.5 |
272.9 |
| H72 |
C7 |
N8 |
H8 |
17.9 |
339.4 |
| N8 |
C7 |
H72 |
C6 |
129.6 |
240.6 |
| N8 |
C7 |
H72 |
H71 |
244.8 |
120.2 |
| C6 |
C7 |
H72 |
H71 |
115.2 |
239.6 |
| H72 |
C7 |
C6 |
N5 |
109.4 |
212.8 |
| H72 |
C7 |
C6 |
C9 |
294.0 |
33.1 |
| N5 |
C6 |
C7 |
H71 |
218.9 |
92.6 |
| N5 |
C6 |
C7 |
H72 |
109.4 |
212.8 |
| C7 |
C6 |
N5 |
C9 |
184.5 |
180.3 |
| N5 |
C6 |
C9 |
O9 |
304.1 |
240.0 |
| N5 |
C6 |
C9 |
C10 |
66.5 |
0.0 |
| N5 |
C6 |
C9 |
H9 |
183.7 |
120.0 |
| C9 |
C6 |
C7 |
H71 |
43.5 |
272.9 |
| C9 |
C6 |
C7 |
H72 |
294.0 |
33.1 |
| C7 |
C6 |
C9 |
N5 |
175.5 |
179.7 |
| O9 |
C9 |
C6 |
C10 |
237.6 |
240.0 |
| O9 |
C9 |
C6 |
H9 |
120.4 |
120.0 |
| C6 |
C9 |
O9 |
HO9 |
179.9 |
60.0 |
| C10 |
C9 |
C6 |
H9 |
242.7 |
240.0 |
| C6 |
C9 |
C10 |
O10 |
62.5 |
60.0 |
| C6 |
C9 |
C10 |
C11 |
187.3 |
179.9 |
| C6 |
C9 |
C10 |
H10 |
304.0 |
300.0 |
| C6 |
C9 |
O9 |
C10 |
125.8 |
120.0 |
| C6 |
C9 |
O9 |
H9 |
243.5 |
240.0 |
| C10 |
C9 |
O9 |
H9 |
117.7 |
120.0 |
| O9 |
C9 |
C10 |
O10 |
185.9 |
180.0 |
| O9 |
C9 |
C10 |
C11 |
310.7 |
300.0 |
| O9 |
C9 |
C10 |
H10 |
67.4 |
60.0 |
| C6 |
C9 |
C10 |
O9 |
236.6 |
240.0 |
| C6 |
C9 |
C10 |
H9 |
116.1 |
120.0 |
| O9 |
C9 |
C10 |
H9 |
239.5 |
240.0 |
| C10 |
C9 |
O9 |
HO9 |
54.1 |
300.0 |
| O10 |
C10 |
C9 |
C11 |
235.2 |
240.1 |
| O10 |
C10 |
C9 |
H10 |
118.5 |
120.0 |
| C9 |
C10 |
O10 |
HO1 |
180.1 |
60.0 |
| C11 |
C10 |
C9 |
H10 |
243.3 |
239.9 |
| C9 |
C10 |
C11 |
H111 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H112 |
305.3 |
300.0 |
| C9 |
C10 |
C11 |
H113 |
54.8 |
60.0 |
| C6 |
C9 |
H9 |
O9 |
119.5 |
120.0 |
| C6 |
C9 |
H9 |
C10 |
238.0 |
240.0 |
| O9 |
C9 |
H9 |
C10 |
118.5 |
120.0 |
| H9 |
C9 |
O9 |
HO9 |
296.4 |
180.0 |
| H9 |
C9 |
C10 |
O10 |
306.4 |
300.0 |
| H9 |
C9 |
C10 |
C11 |
71.2 |
60.0 |
| H9 |
C9 |
C10 |
H10 |
187.9 |
180.0 |
| HO9 |
O9 |
C9 |
C10 |
54.1 |
300.0 |
| HO9 |
O9 |
C9 |
H9 |
296.4 |
180.0 |
| O10 |
C10 |
C9 |
H9 |
306.4 |
300.0 |
| C9 |
C10 |
O10 |
C11 |
125.3 |
120.0 |
| C9 |
C10 |
O10 |
H10 |
242.0 |
239.9 |
| C11 |
C10 |
O10 |
H10 |
116.8 |
120.0 |
| O10 |
C10 |
C11 |
H111 |
303.9 |
300.0 |
| O10 |
C10 |
C11 |
H112 |
69.2 |
60.0 |
| O10 |
C10 |
C11 |
H113 |
178.7 |
180.0 |
| C11 |
C10 |
C9 |
H9 |
71.2 |
60.0 |
| C9 |
C10 |
C11 |
O10 |
236.1 |
240.0 |
| C9 |
C10 |
C11 |
H10 |
117.8 |
120.1 |
| O10 |
C10 |
C11 |
H10 |
241.7 |
240.1 |
| C11 |
C10 |
O10 |
HO1 |
54.8 |
300.0 |
| H111 |
C11 |
C10 |
H112 |
234.7 |
240.0 |
| H111 |
C11 |
C10 |
H113 |
125.2 |
120.0 |
| H112 |
C11 |
C10 |
H113 |
250.5 |
240.0 |
| H10 |
C10 |
C9 |
H9 |
187.9 |
180.0 |
| C9 |
C10 |
H10 |
O10 |
119.2 |
120.0 |
| C9 |
C10 |
H10 |
C11 |
239.4 |
239.9 |
| O10 |
C10 |
H10 |
C11 |
120.2 |
119.9 |
| H10 |
C10 |
O10 |
HO1 |
298.0 |
180.1 |
| H10 |
C10 |
C11 |
H111 |
62.2 |
59.9 |
| H10 |
C10 |
C11 |
H112 |
187.5 |
179.9 |
| H10 |
C10 |
C11 |
H113 |
297.0 |
299.9 |
| HO1 |
O10 |
C10 |
C11 |
54.8 |
300.0 |
| HO1 |
O10 |
C10 |
H10 |
298.0 |
180.1 |
| H111 |
C11 |
C10 |
H10 |
62.2 |
59.9 |
| C10 |
C11 |
H111 |
H112 |
125.3 |
120.0 |
| C10 |
C11 |
H111 |
H113 |
234.8 |
240.0 |
| H112 |
C11 |
H111 |
H113 |
109.5 |
120.0 |
| H112 |
C11 |
C10 |
H10 |
187.5 |
179.9 |
| C10 |
C11 |
H112 |
H111 |
234.1 |
240.0 |
| C10 |
C11 |
H112 |
H113 |
117.0 |
120.0 |
| H111 |
C11 |
H112 |
H113 |
243.0 |
240.0 |
| H113 |
C11 |
C10 |
H10 |
297.0 |
299.9 |
| C10 |
C11 |
H113 |
H111 |
125.8 |
120.0 |
| C10 |
C11 |
H113 |
H112 |
242.9 |
240.0 |
| H111 |
C11 |
H113 |
H112 |
117.1 |
120.0 |